march4l (march4,LOC108258493,LOC106596293,LOC107567720,LOC107663921,LOC107722703,LOC107558390)


Basic Information

Item Value
gene id march4l
gene name march4,LOC108258493,LOC106596293,LOC107567720,LOC107663921,LOC107722703,LOC107558390
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11666909 ~ 11690520 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931929.2
AAACGGgctaggaagaaaaaaaaaggagtcatTAGTGAAACATTTACTCACACGAATGAGCTACAGTAATTTAGCTATACATTATGTTGCGAACCAAAGTGTCATTTATCCATCATGAGGGCATGTCAGGTCAGTAAATGTCAAGATATCTTGTTCAACTCTCACAGTATAATAATAGTGGATTTTATAAGTATTCTTAATtaatattgcacttttttttagaaaacaaaacaaaacaaaaacccagATCTCTTCCTGTCCCGTGTTTTAGTTTTGGGAATTGTGAAAACTGCTGTATTGTGTGGAATCGATTCCAGGAGTCGACTCGTTTGATTCGCGACAGCTGAGTGAGAGTCGGAGTCGACTCTGTTCGCTGGAGCGGCGCCGCGTCAGTGGACGGTTATGTGTGTAGAATGTGTAGCGCGGCTCGAACAGAAACATTCTCCTGAAAAGCcgttacatacagtatgtgttagCTTTAGCCACTCTAGCTAGCTGACGGAGTGCGAGCAGTGATTCCGGTTAACAGATTTGTGTCCATTACTCTGACTAGCCGGGATAGTTTGCGACGCTAAGCGGTAAGGTGTTTTATCTCTGCACCTCGTCCATCGTTCAGCGAGTAAAAACGGGCACATGTGGTGCGCTGTCGGTGTCGGTGTCGGTGTTGGATGGTGCCGGAGTTCGCTGAGCCGTTTACCGATGCTGCGGCGCGAAGGAAAGCAGAGAGGCCGCCGCTGTCGCGTCTTGTTCAGTGACCTGAAGGCTTTGCTGCTCaggccaccaccaccaccaccaccgccACCGGTACCGTCGGCCATGAACGGAGCGCCGAGCGCCCACGGCGCTTCTCCGGCGGACCGGACGCGGGACGAGGACgctgccgccgccgccgccgccgccgccgctgaGTGGGCTGGAGAAGCGGAGCGGAGCGCCACGGAGAGTCCGGACGGCGGCAGCTCGAGCGAGGACTGCACCAAAGAGAAGCTCGACGAGAGAGCGAGTCTGGAGAGCTGCACGGAGAGCGGAGCGCGCACACCTCTGTGCCGGATCTGCTTTCAGGGCGCAGATCAGGGTGAGCTGTTGAGTCCGTGCCGCTGTAGTGGCTCGGTGCGCTGCACTCATGAGCCGTGCCTGATAAAGTGGATCAGTGAAAGAGGCTCGTGGAGCTGTGAGCTGTGCTACTACAAGTACCAAGTCATCGCCATCAGCACCAAGAATCCGCTACAGTGGCAAGCGATCTCTCTGACGGTGATCGAGAAGGTGCAGATTGCAGCGGCGGTGCTCGGTTCGCTCTTCCTCATCGCCAGCATCTCATGGCTTGTGTGGTCTTCGCTTAGTCCCTCGGCCAAGTGGCAGCGCCAGGACCTGCTCTTCCAGATCTGCTATGCCATGTACGGCTTCATGGACCTGGTGTGCATTGctctgatAGTGCACGAGGGGCCGTCCGTGTTTCGTATCTTCCACCGCTGGCAGGCTGTGAATCAGCAGTGGAAGGTGCTCAACTACGACAAGCTGAAGGACTCGGAGGACCCTCAGAAGGGCAGCAGCACCCTACGCTCCCTCACACTCCCCCTGAGCAATCGGGCAGGGGTGGCCCCACCCACTTCCCCTTCTCCCTCTAGCTCCGCCCTCACGACAGCTGCCACAGTGACCATCACCCCAGGCACAACTGTGCCAGCGGTCACTGCAGCTCCAGAGGACACCTCCGAGGCGGAGCGTCACTGTGCGTACAGCCTCCTGCAGCTGCTCAGCCTCAATCTCCGAAACCAGGAGCCCAGAAATGCCACAACGCAGCCCAGAAACGACAACCGCGAGCTGGTCATGAGAGTCACCACCGTCTGAGACGGCGAGTGAAGCCAAACTGGAGATATATGACAACTCGGGAAGGGAAGAATGACAGTTGGACCCAGCAGCAGAGACATTTGCTAGCAAATGAGCTCAAGGTCCTTCTGGTACACTTTGGCATTTATGGAAGTAATACATTTTTGAAAGTAAGACAGAGAGGTTTGTTTGAGGATTTTAGTTGTCGAGCACACCTTCAAGGCTGTGTGAGGCAGTGTTGAAAGCTAAAGGTCAAGTTCAgagcaaagtgtttttttaagcGAGTGGCTCATTAGGGCTGATGTTAGTACATGGCCACACAAAGTGGTGAGTATTTTCAAGCACAAGATCCAACAATGCAATGCAGCTCTAATAtgtcacactaacacacacacacacacacacacacaaaacattacaCAAGGTCAAAGTTTGCTATGAGACACCACCAggtaattacacacacacacacacaaagcctaaaatgaaaagaattttGTGGGGAAAAAGATGTACAGTTTTCCACTAATCccaaatgtagtcgatcagccaggacatgtttggtgtccaaGTAGTTTTGCACTAACACTACAAGGCTAAtttagctaacaagtaatggaagtctatgtCATCCAAAATCTTTTCTGGAGATATCTGCCCCAGACCACATCCAGTTTTTCAGTGATGTCATCCAGATTcactgatgtggtttaggacacagtgggatttaacatgaacaaaacttcaAAACTCTAATATTAtgggcagccatcttggatatttttttccccttagcaCCGTTTGATATCATTCTGCCTCCTAGGCCCCGCCTCCCAAAGTTGGACTGCATAATTGCAACAGAATGCTGGGTCTATTCAAGCAATAATACAGTTCCACTTTGAACTTACGCTGGGAAATACAgcttcttcattttatttaaaaatgagaataCATCGATTTGTGCTTGAATTTACGGAAAAGTTTCTGAGTAAGATGGACTAATTATTTGATAACTACATTAGTCTTTTAGCTCCTGTGtaaaagtaaagaagcaaaCGGCGTCAGTCCCGGCTCAGTGACTCTATTTAGGGTGAGTGGAAAATGGCAGGGGTGGGGGGGAAAGGTTTTCTGCCCAACTACACCTTtaagtttacattttaaacacaactgGCTGTTTAGAGAAGGGTCAGTAACGCTGTTAATGGACTCTCAATTCAATAAGAGCCCGGTTTCCACGGGGACGACCCGCAGCCACACTGAAACTACCCAACTAACGTGGCCTGAGTCAAGCGCTCCTGTTTGACGGActcattttgtttacatttgttaaaatgtcagaaaagaaaatacat

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase MARCH4-like

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005795 Golgi stack cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0016020 membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K10659 MARCH4_9_11; E3 ubiquitin-protein ligase MARCH4/9/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931929.2 True 3176 mRNA 0.50 4 11666909 11690520

Neighbor

gene id symbol gene type direction distance location
alg11 alg11,LOC107556718,LOC107705036,LOC107588826 coding downstream 114187 11546974 ~ 11552722 (-)
spp2 spp2 coding downstream 123212 11539380 ~ 11543697 (-)
trnar-ucu_14 NA coding downstream 193938 11472880 ~ 11472971 (-)
pld6 pld6 coding downstream 195366 11467404 ~ 11471543 (-)
rab3da rab3da,LOC108258507,LOC108435977,LOC103040938,LOC107757002,LOC107747429,LOC107675349,LOC107569532 coding downstream 202287 11448379 ~ 11464622 (-)
vps8 vps8,LOC107699090,LOC107719737 coding upstream 79326 11769846 ~ 11866324 (-)
igf2bp2b igf2bp2,LOC108435967,LOC107699092,LOC107704342,LOC107596519 coding upstream 201154 11891674 ~ 11937127 (-)
LOC117596169 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393,LOC107749880 coding upstream 250632 11941152 ~ 11943095 (-)
LOC113537469 LOC108258698,LOC108435966 coding upstream 255314 11945834 ~ 11953213 (-)
ubac2 ubac2 coding upstream 266216 11956736 ~ 11984895 (-)
G374371 NA non-coding downstream 70670 11595192 ~ 11596239 (-)
G374370 NA non-coding downstream 71928 11593966 ~ 11594981 (-)
G374230 ddx39aa,ddx39ab,LOC100304672,LOC107603018,LOC107692155,LOC105901571 non-coding downstream 306488 11358843 ~ 11360421 (-)
G374198 grin2b,grin2bb,LOC108258482,LOC107603025,LOC107551907,LOC107676879 non-coding downstream 424072 11238241 ~ 11242837 (-)
G374196 LOC108258482,LOC107676879,LOC107551907,LOC107603025,LOC107692185 non-coding downstream 429478 11237062 ~ 11237431 (-)
G374495 c26h3orf70 non-coding upstream 62054 11752574 ~ 11755115 (-)
G374657 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393 non-coding upstream 244014 11934534 ~ 11943075 (-)
G374680 NA non-coding upstream 273284 11963804 ~ 11964781 (-)
G374727 NA non-coding upstream 401992 12092512 ~ 12092736 (-)
G374885 NA non-coding upstream 468188 12158708 ~ 12158915 (-)
lipt1 lipt1 other downstream 794353 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 1231542 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 1748130 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 3056068 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 3234471 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 388371 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 934531 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 1617193 13307713 ~ 13320530 (-)
G375428 NA other upstream 1748699 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 2281816 13972336 ~ 13980251 (-)

Expression


Co-expression Network