tmco3 (tmco3)


Basic Information

Item Value
gene id tmco3
gene name tmco3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6226053 ~ 6238578 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931930.2
GTTCAGCTCCAGAGGAGTTTAGTATGTGGCGGCTGGAGAGGGGCGGAATCACAAGAGCCCGATTGTTTCCTTCATTAACTGAGGAGCACAGGGCTACAGAGACGACCTAAACATTCTCCAAGCTGACGTGACCAGCCAGCTGAATGCAGACCCTGTATGTGCTGCTGTGTCTGGGCCTGGTGGGGGCGCTGCAACCGGCTGAGCACCTGGCCCGGAGTGCCATTCAGCTCCATCGTGGCAGGGGGGTGCCATCTGCCAGTGGGCACCGCTGGGTGGCCGAGAACTGCCGCCGCCTCTCGAGCCTTCTGCGGCAGAAGAATGCTGCCGTGAGGAAGCTGGAGGCAGCAGCTGCAGCGGCGGAGCGTGACCAGACGCTCTCGGATGCTGAGCGCCTCTTCCAGGTGCACACACTCGAGGTGTTCCAGAAGGAGCTGAATGAGAGTGAGCGTTCCCTGTTTCAGGCTGTGCTGGGTCTTCAGCGTGTGCTGAAAGGTGACTTTGGTGATGTGGCGAACATGAAGGAAAGCAGCCGCCAGAGGCTTGAGGCGCTCAGGGAGGCGGCCATTAAGGAGGAGCAGGAGTATGTGGAGCTGGTCGCAGCCGAGAAGCACCAGCAGGAGGCGCTGAAGGTGGCGCAGGAGCGGAACAAGACCCTCTCCATGCTGGACGAGATTCTTGAGGATGTTCGGAGGGCTGCTGACCGCCTGGAAGAGGAGATCGAGGATCATGTCTTTGACAACAACAAGCAGATGAAGGGGGTCAATGTCGAGGCAGTCCTGAGGGtggaggaagatgaagaggacAACAAGAGGAAGAATGTTTCGTGGCAAGTAGCAGAAGGTGACCTGGGACTGAGTATGCTCATTGATTCACAGAACAACCAGTATGTACTGACCAAACCCCGGGACTCTACCATTCCTCGTGCTGACCACCACTTCATCAAGGACCTGGTGTCAGTGGTGATGCTCTCTCTGCCCTGCGGCTGGCTGTGCACACTGGTTGGACTGCCTCCTATGTTTGGCTACATAGTTTGTGGGATTCTGCTAGGTCCTTCAGGGCTTAACAGCATTAAGtCCATGGTTCAAGTAGAGACGCTGGGGGAGTTGGGTGTGTTCTTCTCACTCTTTGTGGTTGGCCTTGAGTTCTCTCCTGAGCGACTGCacaagGTGTGGAAGATCTCCGTTCAGGGCTCCAGCTACCTCAGCCTCCTGatggtgggggcggggcttcttTGGGGAAAGGTGTTTAGGCTCCACCCTATTCAGACGGTGTTCAtttccagctgtctgtctctgtccagcACTCCTCTCGTGTCGCGCTTCCTTTCTGGCGGGTCCAGAGGGGATAAGGAAGgtgatcTGGACTATAGCAGTGTTTTACTGGGTATGCTGGTGATGCAGGATGTTCAGTTGAGCCTTTTCATCGCGATCATGCCAACTCTTATCCAGGCAGGAAGTGGTGGGATGGACAGTGCTCTGATTGGAGGATTGCGTGTCCTGGTGCTGTTGGCTCAGGTACTCGTCTCCTTCGCCGTCGTGCTACTGATCTGCTGGCTCCTCAGGTCTCATCTGATTGGTCCGTTCTACAGAAAGCTCCACACTGAGAGTAAAGGGAACAAAGAGATCCTTGTGCTGGGAACTGCAGCCTTTGTATTCCTAATGCTCACAGTAACAGATTTTCTGGACGTTTCCATGGAGCTAGGCTGTTTCCTCGCAGGAGCACTGCTCTCCTCACAGGGTCACATGGTTACCAGTGAGGTCATGAGCTGTACTGAGCCAATCAGAGACTTCCTGGCAATTATCTTCTTTGCATCTATTGGGCTGCATGTGTTCCCGACGTTTGTTCTATACGAGTTAACCATCCTACTGGTTTTGACCCTGTCAGTGGTGATCATGAAGTTCGTCATGGCAGTGCTGGTGCTGACGGCAATCCTTCCCCTGGGATACCGACACATCCGCTGGATTGTATCAGCTGGCCTGGCGCAAGTCAGTGAGTTCTCCTTTGTCCTGGGCAGCCGAGCTCGCCGGGCTGGCATCATCTCAAGAGAGgtGTATCTTCTCGTACTGAGTGTCACTACATTAAGTCTGCTGTTAGCACCTGTGCTATGGAGAGCTGCGACTCTCAAATGCATCCCTCGGGTTGAGAAGAAACCATCCACCTGACCCAGACTCAGCATGAGGAGACTCGCTGTTTTCTCACGTGGAGGATTGTGGTACTAGAAGGGTTGTAAGCCAAGGCACCTTTTGGCTTTGACACAAAATTGCATCATTTTTGTGTTCCAAGCCCCTCTGGGACAAAGGGACTGCCACGTCTCACTTTCTAATGATAACCAGTTCTAAGCATATTTTAAAGCCTCGTTCATGGAGCATACTTAGACAATAATACAAAAGATTGCACAATAGGGTGAGATGAGACTTGAATTTTTATAGATGTGACTAAGAGCTTATTGTGTTTTAAGCTCTTTATTGCATAAACTatatttaaactgtatttattcCTGTAGATTTGCAAACTGAAAGCTGTTCTGCTCGTATAAGGAAGTGCCTAACTGTGCCTTGACGTCAGCTGATGTCAACAGATGTACCAAATAAACTTCAGTGGCGAAGTACATACCAGTTTGTCTAGTTGCACCAGCCTTCGAAATCTCAATAGATTTTTGCATGTGTACACGTTTGCACATTCTTATTGACTGTTATAAAGGTCAGCAGCTTTCTGGGCAGAAGTCAAATTAGAGCAGAAGTGTCATGAAATCAGCAAACACATTCCAGCACTGTCATGTGTATTATTCTGAAAGTGGCCACTGTCACAAGTGGCCATGTGTACTTTTCATGAATGTCcaataaattatttttgaaagtcTGTAGGTAATGTGAATGCCAGGGTTTTCAGACGAAGGAGTTGGCCATGTTGTCTTTATTAAACTATGCGCTGTAAGTAGGAGAAATTACAGTTTACAGATGTAAAGGGTTCATGAATATATGAGATCAGGTCATATTAAAAGAAATTATGACTTA

Function

symbol description
tmco3 Predicted to enable solute:proton antiporter activity. Predicted to act upstream of or within cation transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMCO3 (transmembrane and coiled-coil domains 3).

NR:

description
PREDICTED: transmembrane and coiled-coil domain-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931930.2 True 3014 mRNA 0.50 13 6226053 6238578

Neighbor

gene id symbol gene type direction distance location
tfdp1b tfdp1 coding downstream 3498 6203697 ~ 6222555 (-)
grk1a grk1,grk1a,LOC107748333 coding downstream 25873 6191628 ~ 6200180 (-)
cenpe cenpe,LOC107751066,LOC107573438 coding downstream 35659 6162114 ~ 6190394 (-)
LOC113537602 tmem255b coding downstream 65091 6136507 ~ 6160962 (-)
blzf1 blzf1 coding downstream 242256 5976377 ~ 5983797 (-)
lamp1a NA coding upstream 41246 6279824 ~ 6292747 (-)
cul4a cul4a,LOC102780633 coding upstream 56802 6295380 ~ 6317459 (-)
LOC117596162 LOC108258591 coding upstream 88199 6326777 ~ 6330275 (-)
LOC113537543 LOC108258588 coding upstream 125234 6363812 ~ 6380175 (-)
f7i fa7 coding upstream 133797 6372375 ~ 6378994 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 221263 6001838 ~ 6004790 (-)
G371135 NA non-coding downstream 224440 6001179 ~ 6001613 (-)
G371153 NA non-coding downstream 226579 5998848 ~ 5999474 (-)
G371152 NA non-coding downstream 227894 5998003 ~ 5998159 (-)
G371147 ercc5 non-coding downstream 231306 5993489 ~ 5994747 (-)
G371454 NA non-coding upstream 290819 6529397 ~ 6536004 (-)
G371487 NA non-coding upstream 325271 6563849 ~ 6566945 (-)
G371595 NA non-coding upstream 569915 6808493 ~ 6815071 (-)
G371632 NA non-coding upstream 629166 6867744 ~ 6867960 (-)
G371625 NA non-coding upstream 641292 6879870 ~ 6881780 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 192660 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 273740 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 679021 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 831041 5388904 ~ 5395012 (-)
G370658 NA other downstream 1336672 4843329 ~ 4889381 (-)
LOC113537742 LOC108258591 other upstream 120061 6358639 ~ 6363203 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 631988 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 820257 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 1118693 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 1479685 7718263 ~ 7724795 (-)

Expression


Co-expression Network