LOC113537465 (atp1a1a.1,LOC108258575,LOC108429870,LOC107653678,LOC107717912,LOC107718011,LOC107698904,LOC107555257)


Basic Information

Item Value
gene id LOC113537465
gene name atp1a1a.1,LOC108258575,LOC108429870,LOC107653678,LOC107717912,LOC107718011,LOC107698904,LOC107555257
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5253693 ~ 5268198 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931934.2
CGCGCGCCGCCGCCGGAGGTCGGTGCGTGTCCGGGTGGAGTGACACGTGTGGCCGGGACGCATTCAGGGGCGCCTGTGTCAAGCCAACGGGAAGTTTTATTtagtgactttatttattttttaactatcTGGATTGAACAGACAATATTTCTCTACTCTATTTAAACCCCAAAGGCGTAAAATGGGACGCGGAGAAGGTCGGGAACAATATGAGCTGGCAGCCACCTCAGAGCAGGGGGGCAAGAAATCCAAGCCCAAGGGCAAGAAGGACAAGGATAAGGATATGGATGAACTTAAAAAGGAAGTGGACTTGGATGATCATAAGCTGAGTCTGGAAGAGCTTAACAGGAAGTATAGCACCGATCTTACCAGGGGATTGACTGCCGCTCGTGCAAAAGAGATTCTTGCACGTGATGGACCCAATGCTCTGACCCCCCCTCCCACAACCCCAGAATGGGTCAAATTCTGCAAACAGCTTTTTGGTGGattctccactcttctgtggATTGGAGCTATTCTTTGTTTCCTGGCATATGGAATTCAGGCAGCTTCAGAAGATGAACCAGCAAATGATAATTTGTACCTGGGTATTGTGTTATCTGCAGTGGTTATGATCACTGGTTGCTTCTCATACTATCAAGAGGCTAAGAGCTCAAAGATCATGGACTCCTTCAAGAATCTTGTTCCTCAGCAAGCCTTGGTCATCCGTGatggtgagaaaatgagcatCAATGCAGAGGATGTGGTTGTTGGAGACCTTGTGGAGGTTAAGGGTGGAGATAGAATTCCTGCTGATCTGCGTATTATTTCTGCCCATGGATGCAAGGTGGACAATTCCTCACTCACTGGTGAATCTGAGCCCCAGACTCGTACTCCAGACTTCTCTAATGAAAATCCTTTGGAAACAAGgaacattgcttttttttcgACCAATTGTGTAGAAGGTACAGCTAGAGGTATTGTCATCAACACTGGTGATCGCACTGTGATGGGCCGTATTGCTACTCTTGCCTCTGGTTTGGAAGTTGGCCGAACCCCCATTTCTATCGAGATTGAGCACTTCATCCACATTATCACTGGTGTGGCTGTCTTCCTTGGAGTGTCCTTCTTTATTCTGTCACTGATTCTTGGATACAGCTGGCTAGAGGCCGTCATTTTCCTCATTGGTATCATTGTTGCAAATGTGCCAGAGGGTCTCTTGGCTACCGTTACTGTGTGTTTGACTTTAACTGCCAAACGTATGGCGAAGAAGAACTGTCTGGTAAAGAATCTTGAAGCTGTAGAAACTCTTGGCTCCACCTCCACTATTTGCTCAGACAAGACAGGAACTCTGACTCAGAATCGTATGACCGTGGCACATATGTGGTTTGACAATCAAATTCATGAAGCAGATACCACAGAGAACCAAAGTGGAACCTCTTTTGACAGAAGCTCTGCCACTTGGGCTGGCCTGGCTCGAATTGCTGGCCTCTGCAACCGTGCAGTCTTCCTTGCAGATCAAGATAATGTTCCAATCCTTAAGAGAGATACAGCTGGTGATGCATCAGAGTCTGCCCTGTTGAAGTGTATTGAGCTTTGCTGTGGTTCAGTGAAAGAGATGAGGGATAAATACACAAAGATCGCAGAGATCCCTTTCAACTCCACCAATAAATACCAGCTGTCAATCCACAAGAACCCCAGTGATGGAGAGACCAAACACCTGCTAGTAATGAAGGGAGCTCCCGAGAGGATTTTGGACCGATGTTCAACTATTATGCTTCAAGGAAAAGAGCAACCACTGGATGATGAGTTGAAGGATGCTTTCCAGAATGCCTACTTAGAATTGGGGGGCCTGGGAGAGCGAGTGCTGGGTTTCTGCCATTACAATCTTCCTGATGATCAGTTCCCTGAGGACTTCCAGTTTGATACAGATGAGGTGAACTTCCCCACTGAGAACCTGTGCTTTGTTGGACTCATGTCCATGATTGATCCTCCTCGTGCTGCAGTACCTGACGCTGTTGGCAAGTGCAGGAGTGCTGGAATCAAGGTTATCATGGTTACAGGAGACCATCCAATCACAGCTAAAGCTATTGCTAAGGGTGTGGGTATCATCTCTGAAGGCAATGAAACTGTGGAAGACATCGCTGCTCGTCTGAACATCCCAATAAACGAGGTCAACCCAAGAGATGCCAAGGCATGTGTGGTTCATGGTGGTGATCTTAAGGACCTGACCCCTGAGCAATTAGATGATGTCTTGAAACACCACACTGAGATTGTGTTTGCCAGAACTTCTCCTCAGCAAAAACTGATTATTGTGGAAGGTTGCCAGCGACAGGGTGCCATTGTGGCTGTGACTGGTGATGGTGTTAATGATTCTCCTGCCCTGAAGAAGGCTGACATTGGAGTAGCAATGGGTATTGCTGGATCTGACGTCTCCAAACAGGCTGCTGATATGATTCTCCTGGATGACAACTTTGCTTCTATTGTTACTGGAGTAGAAGAAGGCCGCCTGATTTTTGACAACTTGAAGAAGTCAATTGCTTACACCCTGACGAGTAATATTCCTGAGATCACaccttttcttctgtttataaTTGCAAACATCCCTCTTCCTCTGGGCACAGTCACCATTCTTTGCATAGACCTTGGTACAGACATGGTCCCTGCAATTTCCTTGGCCTATGAGGCTGCTGAGAGTGACATCATGAAGAGGCAACCCAGAAACCCCAAGACGGACAAGCTGGTTAATGAAAGGCTTATTAGCATGGCCTATGGACAGATTGGTATGATTCAGGCGCTTGCTGGCTTCTTTACTTACTTTGTAATTCTGGCTGAAAATGGATTCTTGCCTTCTACATTGTTGGGTATACGTGTGTTCTGGGATGACAAATATATCAATGATCTGGAAGACAGTTATGGACAGCAATGGACATATGAGCAGAGGAAGATCGTGGAGTTCACATGCCACACTGCATTCTTTATCAGTATTGTAATTGTGCAATGGGCAGATTTGATCATCTGTAAGACCAGGAGGAACTCTGTCTTCCAGCAAGGAATGAAGAACAAAATTCTCATCTTTGGGCTGTTTGAGGAGACTGCTTTGGCAGCTTTCCTCTCCTACTGCCCGGGAATGGATGTTGCCCTTAGAATGTATCCCCTAAAACCAAACTGGTGGTTCTGTGCCTTCCCCTACTCACTTCTTATCTTTATTTATGATGAAATCCGAAAGCTTATCATCCGACGCAGTCCAGGAGgttgggtggagagagagacctATTACTAAAGCATCCTGTCCACATTGCACAAGTTTATTTGCATGGCTGTCTTGCTGCTTGGAATTTAACCTCagtaattcagttttttttatatacacaaaaatCTGTACATCTCTAGGGAATGCTTGACACGAACATGGAGATCATGAACCAAGACATTGCGTGCCTTGTTTCTGAAGCCGGACCAATTTTCTAcgtttttaaaattgaaattgtgATATAAATAAACTCCCAGTCGTTTCCCACATTTGGAtgctttacatttattcatttggcagacactttgTCCAAATAGACCTAAAAATTTATACAGGATACAAGCATAGAGCTGAGCAGTTTGAaggggtcttgctcaagggccttaAAGTGCCCACTGActagatcttttttttgtttgtttgtttgtttgtttttgttactctTCTCTCCTCTTGTGAATTGACTaatctaaaatttaaaaaaaaaaagtagttttacTCAGTACACCCCTATTAGCTCTGCCATCCATTTCTGAAAGTGGGATAAACTAAGTTTATAGGCGTGATTTATAGCTTTAAGGCTTTCATGGTGCAAAATGATCTGTGAGCTTTACAGACCAAGTTGGAGCCATTGAGGTCTGTctttctgtgcttccaactcaGGGGTGGGTTTTAAAGTCTGCTCTTTATATACTTTGGAGGGAAGCATGTTTAAGCCTAAATGACCGTGGCTCCCCAGCATATAAGCAAAAGCTGTTCATGTTTGAAGCTAATTCTGTTAAATTCACATTATGTGATCATGACGTGAATATTTGGAATTCACATACACAAAGGAAATCTTAAGCAGATGGGCTCTGGTACTGTCTAATTTCATTTAATGACACATTTGGCTACAGAGGTCATTTTTGCTTAAGATTTGTTTCCTTTGTGTATGTGAATtaaattagcaaattagctaTTTATTTCCGCGATCTGTTCCACTTAACCAAATATTTCCTCAGTTACTATAAAACTGAGACCAACACTGGTAAGACCATTAACAACTGTATAATTGTCTAGGTTACAGTGTGAGCTACACTCTTTCAGCTGTGCTGTGCTTAATTGATTTACAAATATTTGATAAACCAAATGAAACAGTGGCACGtcaaactttttcttttttcccccaaaagcattttaaaagatcattaagatgaaaaatgtattgcagcacattttattgtttggCACAGTAAGAATACGCATGAACCCAGTTTACTTTTTATGTAGGAGTATGCTTTTGCCTGATATGACAttaagccagaaaaaaaatgtaatttgtattttaaaccATGTATTTAGTGTGCATGATTTTGCATGAATTTTAGAGAATTAAGAattatacaaacaaaacagcaacTGGGTCCAGTGTGAAGTCAGATTATCATGAGGCAGAGGAAGTGCTCTGGGACCAGGTAACGTGTGTACAGTCATCTTTTCTGCCTAATTTAGGCTTTACCACTTTTTGAAACCTTAATAAAATGCAGGAAATATGAGCTTGCCAATCATCTTCTGTTTATGACCTCCTTGATATGTAAGTCATTACTATAAATGCATTCCCTATGTGAATGAAGACTGTTAAATGAATccaataaaaagacaaaaggtTA
>XM_026931935.1
GTTTCTGCCATTACAATCTTCCTGATGATCAGTTCCCTGAGGACTTCCAGTTTGATACAGATGAGGTGAACTTCCCCACTGAGAACCTGTGCTTTGTTGGACTCATGTCCATGATTGATCCTCCTCGTGCTGCAGTACCTGACGCTGTTGGCAAGTGCAGGAGTGCTGGAATCAAGTTATCATGGTTACAGGAGACCATCCAATCACAGCTAAAGCTATTGCTAAGGGTGTGGGTATCATCTCTGAAGGCAATGAAACTGTGGAAGACATCGCTGCTCGTCTGAACATCCCAATAAACGAGGTCAACCCAAGAGATGCCAAGGCATGTGTGGTTCATGGTGGTGATCTTAAGGACCTGACCCCTGAGCAATTAGATGATGTCTTGAAACACCACACTGAGATTGTGTTTGCCAGAACTTCTCCTCAGCAAAAACTGATTATTGTGGAAGGTTGCCAGCGACAGGGTGCCATTGTGGCTGTGACTGGTGATGGTGTTAATGATTCTCCTGCCCTGAAGAAGGCTGACATTGGAGTAGCAATGGGTATTGCTGGATCTGACGTCTCCAAACAGGCTGCTGATATGATTCTCCTGGATGACAACTTTGCTTCTATTGTTACTGGAGTAGAAGAAGGCCGCCTGATTTTTGACAACTTGAAGAAGTCAATTGCTTACACCCTGACGAGTAATATTCCTGAGATCACaccttttcttctgtttataaTTGCAAACATCCCTCTTCCTCTGGGCACAGTCACCATTCTTTGCATAGACCTTGGTACAGACATGGTCCCTGCAATTTCCTTGGCCTATGAGGCTGCTGAGAGTGACATCATGAAGAGGCAACCCAGAAACCCCAAGACGGACAAGCTGGTTAATGAAAGGCTTATTAGCATGGCCTATGGACAGATTGGTATGATTCAGGCGCTTGCTGGCTTCTTTACTTACTTTGTAATTCTGGCTGAAAATGGATTCTTGCCTTCTACATTGTTGGGTATACGTGTGTTCTGGGATGACAAATATATCAATGATCTGGAAGACAGTTATGGACAGCAATGGACATATGAGCAGAGGAAGATCGTGGAGTTCACATGCCACACTGCATTCTTTATCAGTATTGTAATTGTGCAATGGGCAGATTTGATCATCTGTAAGACCAGGAGGAACTCTGTCTTCCAGCAAGGAATGAAGAACAAAATTCTCATCTTTGGGCTGTTTGAGGAGACTGCTTTGGCAGCTTTCCTCTCCTACTGCCCGGGAATGGATGTTGCCCTTAGAATGTATCCCCTAAAACCAAACTGGTGGTTCTGTGCCTTCCCCTACTCACTTCTTATCTTTATTTATGATGAAATCCGAAAGCTTATCATCCGACGCAGTCCAGGAGgttgggtggagagagagacctATTACTAAAGCATCCTGTCCACATTGCACAAGTTTATTTGCATGGCTGTCTTGCTGCTTGGAATTTAACCTCagtaattcagttttttttatatacacaaaaatCTGTACATCTCTAGGGAATGCTTGACACGAACATGGAGATCATGAACCAAGACATTGCGTGCCTTGTTTCTGAAGCCGGACCAATTTTCTAcgtttttaaaattgaaattgtgATATAAATAAACTCCCAGTCGTTTCCCACATTTGGAtgctttacatttattcatttggcagacactttgTCCAAATAGACCTAAAAATTTATACAGGATACAAGCATAGAGCTGAGCAGTTTGAaggggtcttgctcaagggccttaAAGTGCCCACTGActagatcttttttttgtttgtttgtttgtttgtttttgttactctTCTCTCCTCTTGTGAATTGACTaatctaaaatttaaaaaaaaaaagtagttttacTCAGTACACCCCTATTAGCTCTGCCATCCATTTCTGAAAGTGGGATAAACTAAGTTTATAGGCGTGATTTATAGCTTTAAGGCTTTCATGGTGCAAAATGATCTGTGAGCTTTACAGACCAAGTTGGAGCCATTGAGGTCTGTctttctgtgcttccaactcaGGGGTGGGTTTTAAAGTCTGCTCTTTATATACTTTGGAGGGAAGCATGTTTAAGCCTAAATGACCGTGGCTCCCCAGCATATAAGCAAAAGCTGTTCATGTTTGAAGCTAATTCTGTTAAATTCACATTATGTGATCATGACGTGAATATTTGGAATTCACATACACAAAGGAAATCTTAAGCAGATGGGCTCTGGTACTGTCTAATTTCATTTAATGACACATTTGGCTACAGAGGTCATTTTTGCTTAAGATTTGTTTCCTTTGTGTATGTGAATtaaattagcaaattagctaTTTATTTCCGCGATCTGTTCCACTTAACCAAATATTTCCTCAGTTACTATAAAACTGAGACCAACACTGGTAAGACCATTAACAACTGTATAATTGTCTAGGTTACAGTGTGAGCTACACTCTTTCAGCTGTGCTGTGCTTAATTGATTTACAAATATTTGATAAACCAAATGAAACAGTGGCACGtcaaactttttcttttttcccccaaaagcattttaaaagatcattaagatgaaaaatgtattgcagcacattttattgtttggCACAGTAAGAATACGCATGAACCCAGTTTACTTTTTATGTAGGAGTATGCTTTTGCCTGATATGACAttaagccagaaaaaaaatgtaatttgtattttaaaccATGTATTTAGTGTGCATGATTTTGCATGAATTTTAGAGAATTAAGAattatacaaacaaaacagcaacTGGGTCCAGTGTGAAGTCAGATTATCATGAGGCAGAGGAAGTGCTCTGGGACCAGGTAACGTGTGTACAGTCATCTTTTCTGCCTAATTTAGGCTTTACCACTTTTTGAAACCTTAATAAAATGCAGGAAATATGAGCTTGCCAATCATCTTCTGTTTATGACCTCCTTGATATGTAAGTCATTACTATAAATGCATTCCCTATGTGAATGAAGACTGTTAAATGAATccaataaaaagacaaaaggtTA

Function

symbol description
atp1a1a.1 Enables P-type sodium:potassium-exchanging transporter activity. Acts upstream of or within several processes, including animal organ development; embryonic body morphogenesis; and regulation of heart rate. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; immature eye; mesoderm; nervous system; and pronephros. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0035051 cardiocyte differentiation biological_process
GO:0010172 embryonic body morphogenesis biological_process
GO:0048840 otolith development biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0030916 otic vesicle formation biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005391 sodium molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931934.2 True 4881 mRNA 0.43 22 5253693 5268198
XM_026931935.1 False 3030 mRNA 0.40 11 5253693 5258014

Neighbor

gene id symbol gene type direction distance location
brat1 brat1 coding downstream 140946 5069360 ~ 5112747 (-)
knstrn knstrn coding downstream 626452 4619201 ~ 4627241 (-)
cfap221 cfap221 coding downstream 634885 4596430 ~ 4618808 (-)
LOC117596183 NA coding downstream 728909 4524502 ~ 4524784 (-)
cnpy3 cnpy3,tnrc5,LOC102798477 coding downstream 735705 4511270 ~ 4517988 (-)
LOC113537466 atp1a1a.4,LOC108258574,LOC108429869,LOC108429865,LOC108258576,LOC107717913 coding upstream 1312 5269510 ~ 5277092 (-)
LOC113537467 atp1a1a.4,LOC108258577,LOC108429867,LOC108429865,LOC108429869,LOC108258578,LOC108258576,LOC108429866,LOC107717913,LOC107653679 coding upstream 20487 5288685 ~ 5316195 (-)
LOC113537353 atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265 coding upstream 63722 5331920 ~ 5340521 (-)
urp2 LOC108258299 coding upstream 141413 5409611 ~ 5412773 (-)
wu:fa56d06 LOC108258903 coding upstream 281355 5549553 ~ 5557090 (-)
G370845 NA non-coding downstream 3597 5249832 ~ 5250096 (-)
G370837 NA non-coding downstream 13417 5240065 ~ 5240276 (-)
G370836 NA non-coding downstream 15681 5236722 ~ 5238012 (-)
LOC113537335 NA non-coding downstream 62046 5190347 ~ 5191647 (-)
G370784 NA non-coding downstream 63393 5190075 ~ 5190300 (-)
G370853 NA non-coding upstream 74557 5342755 ~ 5343080 (-)
LOC113537484 NA non-coding upstream 77397 5345595 ~ 5365148 (-)
LOC113537576 NA non-coding upstream 147428 5415626 ~ 5429432 (-)
G370941 NA non-coding upstream 237914 5506112 ~ 5506317 (-)
G370942 NA non-coding upstream 239904 5508102 ~ 5508369 (-)
G370658 NA other downstream 364312 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 2400482 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 2679222 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 3420964 1824204 ~ 1832729 (-)
G369586 NA other downstream 3458469 1776319 ~ 1795224 (-)
LOC113537294 NA other upstream 120706 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 261794 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 673841 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 747528 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 1090441 6358639 ~ 6363203 (-)

Expression


Co-expression Network