LOC113537466 (atp1a1a.4,LOC108258574,LOC108429869,LOC108429865,LOC108258576,LOC107717913)


Basic Information

Item Value
gene id LOC113537466
gene name atp1a1a.4,LOC108258574,LOC108429869,LOC108429865,LOC108258576,LOC107717913
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5269510 ~ 5277092 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931936.2
GTTGGAGTATAAAGGCTGACACACCTGATTTTGAGACACAGAGTCTCTAATGTCTCTCTGAAGAAAATAAGGGGAGAAGTACAAGGGGGGAAATAGTCAGTTTTTGGAAAAGAATGGGGTTAGGAgCAGGGAATGATAGGTACAGGTTGGCGTCAACATCTGACGatgagggaaaaagaaagaaaggaggaaagagagataaaaaagacCTGGAAGAACTGAAGAAAGAAGTGGACTTGGATGATCATAAGTTGACCTTGGAGGAACTTCAGCGTAAATATGGCACTGATCTCAGTCGAGGTTTGTCCAATTACCGTGCAAAGGAGATCCTTGAACGTGATGGACCCAATGCTCTGACACCTCCTCCTACAACCCCAGAATGGGTCAAGTTCTGCAAACAGCTATTTGGTGGCTTTTGTACACTGCTGTGGATTGGAGCTTTCCTTTGCTTTTTGGCTTATACGATACAGGTTTCCACAGAGAGTGAGCCTGTAAATGATAATCTGTACCTGGGTATTGTACTTGCAGCAGTGGTGATGGTCACAGGTTGTTTCTCATATTATCAAGAGGCTAAGAGCTCAAAGATTATGGAATCCTTCAAGAAACTTGTTCCACAGCAAGCTCTGATTATTCGTGATGGTGAGAAGAGGAGCATTAATGCGGAGGATGTGGTTGTTGGTGACCTTGTGGAAATAAAGGGTGGTGATCGAATTCCTGCTGATCTCCGAATTATTTCTGCACAGGGATGCAAGGTGGACAATTCCTCCCTTACTGGTGAATCTGAGCCTCAAAGCCGTACCCCTCAGTTTTCTAATGAAAATCCTTTAGAGACAAAGAATATTGCATTCCTGTCTACAAATTGTGTTGAAGGCTCTGCCACAGGCATTGTGATCAACACAGGTGATCGCACTGTGATGGGTAGAATTGCTATCCTGGCTTCAAGCCTTGAAGTTGGACAGACACCAATCGCCATAGAGATTGAACACTTCATCCACATCATCACTGGTGTAGCATTTTTCCTGGGTGGCACATTCTGCATCTTGTCCCTGATTCTTGGATATGGCTGGTTGGAAGCTGTCATCTTCCTCATAGGGCTCATTGTTGCTAACGTGCCTGAAGGTTTACTTGCCACAGTAACGGTGTGTCTGACTTTAACTGCCAAACGCATGGCGAAGAAGAACTGCCTGGTCAAAAATCTTGAAGCTGTAGAAACCCTTGGCTCCACCTCTACTATTTGCTCAGACAAGACAGGAACTCTGACTCAGAATCGTATGACTGTGGCACATATGTGGTTTGACAACCAGATTCATGAAGCAGATACCACAGAGAACCAAAGTGGAACCTCCTTTGACAGAAGCTCTCCCACTTGGTCTGCCCTGGCTCGTGTAGCTGGCCTCTGCAACCGTGCAGTCTTCCTTGCAGATCAAGCCAATGTTCCTATCCTTAAGAGAGACACCACTGGAGATGCATCAGAGTCTGCTCTATTAAAGTGTATTGAACTCTGCTGTGGCTCAGTGAAGGACATGAGAGACAAGTATGCAAAACTTGCTGAGATCCCTTTCAATTCCACAAACAAATACCAGCTATCAATCCACAAGAACCCCAATTCTTCAGAGACCAAGCATTTGCTAGTGATGAAGGGAGCTCCTGAGAGGATCCTGGACCGATGTTCAACCATTATGATTCAAGGAAAAGAACAGCCCCTGGATGATGAAATGAAGGATGCTTTCCATAGCGTATATTTGAAACTGGGTGGTCTTGGAGAAAGAGTGCTGGGATTCTCCCATTACAGCCTTCCTGATGATCAGTTTCCTGAAGGATTTGCATTTGACTCTGAGACAGTGAATTTTCCTACTGAGAATCTGTGCTTTGTTGGCCTCATGTCTATGATTGATCCTCCTCGTGCTGCTGTGCCTGACGCTGTAGCTAAGTGCAGGAGTGCAGGAATCAAGGTTATTATGGTTACTGGTGATCATCCAATCACAGCTAAAGCCATTGCTAAGGGTGTAGGTATCATCTCTGAAAGCAGCGAGACTGTAGAAGACATCGCTGCTCGTCTGAACATCCCTGTGGAAGAAGTCAACCCCAGAGATGCAAAGGCCTGTGTGGTCCATGGTGGAGATCTAAAGAATATGAGCCCAGAGGAGCTGGATGATGTCTTAATACACCACAGTGAGATTGTGTTTGCCAGAACTTCTCCTCAGCAAAAACTCATTATTGTGGAAGGTTGCCAGCGGCAGGGTGCCATTGTGGCTGTGACTGGTGATGGTGTTAATGATTCTCCTGCTCTGAAGAAGGCTGACATTGGTGTAGCAATGGGTATTGCTGGATCTGACGTCTCCAAACAGGCTGCTGATATGATTCTCCTGGATGATAACTTTGCTTCTATTGTTACTGGAGTTGAAGAAGGCCGACTGATCTTTGACAACTTGAAGAAATCCATTGCATACACACTGACAAGTAAAATCCCTGAGATGTCACCCTTCCTCTTCTTTGTTATTGCGGGCATTCCTCTCGCTCTGGGCACGGTCACTATTTTATGTATTGATCTAGGAACTGATATGGTGCCAGCTATTTCTTTGGCCTATGAAGGTCCTGAGAGTGATATCATGAAGCGGCAGCCCAGAGATGCCAAGACAGACAAATTAGTCAATGAAAGGCTCATCAGTATGGCTTATGGACAAATTGGGATGATGCAAGCAGTTGGAGGGTTCTTCACTTACTTTGTAATCCTTGCTGAGAATGGATTCCTGCCCTTGTTTCTGATTGGACTGCGTGTAAATTGGGATGATCCATATAACAATGAGCTGGAGGACAGCTATGGCCAGCAGTGGacttATGAGCGCAGAAAAATTGTGGAGTACACATGTCACACTGCTTTTTTTGTCAGTATTGTGATTGTACAATGGACTGACCTAATCATCTGTAAGACCAGGACAAACTCACTGATACACCAGGGAATGAAAAATAAAGTCCTTAACTTTGGCCTTATGGAGGAAACAGCTTTGGCTGCATTTCTGTCATACTGTCCAGGCATGGATGTTGCTGTTAGAATGTATCCACTGAAACCATGGTGGTGGTTATGTCCTGTACCTTATTCACTCCTCATCTTCATCTACGACGAGGTCAGAAAATACTACCTTCGGCGGAACCCAGGAGGTTGGCTAGAAAAAGAGACATACTATTAAACCACAGTGACCCCTCTgctatgaacacacacacagtcaatcaTTGTGCAATGctgaaaataaagcatttttatttatacaataaatatCAGACTTCAACTcagaaaaaa
>XM_026931937.2
GTGGACAATTCCTCCCTTACTGGTGAATCTGAGCCTCAAAGCCGTACCCCTCAGTTTTCTAATGAAAATCCTTTAGAGACAAAGAATATTGCATTCCTGTCTACAAATTGTGTTGAAGCTCTGCCACAGGCATTGTGATCAACACAGGTGATCGCACTGTGATGGGTAGAATTGCTATCCTGGCTTCAAGCCTTGAAGTTGGACAGACACCAATCGCCATAGAGATTGAACACTTCATCCACATCATCACTGGTGTAGCATTTTTCCTGGGTGGCACATTCTGCATCTTGTCCCTGATTCTTGGATATGGCTGGTTGGAAGCTGTCATCTTCCTCATAGGGCTCATTGTTGCTAACGTGCCTGAAGGTTTACTTGCCACAGTAACGGTGTGTCTGACTTTAACTGCCAAACGCATGGCGAAGAAGAACTGCCTGGTCAAAAATCTTGAAGCTGTAGAAACCCTTGGCTCCACCTCTACTATTTGCTCAGACAAGACAGGAACTCTGACTCAGAATCGTATGACTGTGGCACATATGTGGTTTGACAACCAGATTCATGAAGCAGATACCACAGAGAACCAAAGTGGAACCTCCTTTGACAGAAGCTCTCCCACTTGGTCTGCCCTGGCTCGTGTAGCTGGCCTCTGCAACCGTGCAGTCTTCCTTGCAGATCAAGCCAATGTTCCTATCCTTAAGAGAGACACCACTGGAGATGCATCAGAGTCTGCTCTATTAAAGTGTATTGAACTCTGCTGTGGCTCAGTGAAGGACATGAGAGACAAGTATGCAAAACTTGCTGAGATCCCTTTCAATTCCACAAACAAATACCAGCTATCAATCCACAAGAACCCCAATTCTTCAGAGACCAAGCATTTGCTAGTGATGAAGGGAGCTCCTGAGAGGATCCTGGACCGATGTTCAACCATTATGATTCAAGGAAAAGAACAGCCCCTGGATGATGAAATGAAGGATGCTTTCCATAGCGTATATTTGAAACTGGGTGGTCTTGGAGAAAGAGTGCTGGGATTCTCCCATTACAGCCTTCCTGATGATCAGTTTCCTGAAGGATTTGCATTTGACTCTGAGACAGTGAATTTTCCTACTGAGAATCTGTGCTTTGTTGGCCTCATGTCTATGATTGATCCTCCTCGTGCTGCTGTGCCTGACGCTGTAGCTAAGTGCAGGAGTGCAGGAATCAAGGTTATTATGGTTACTGGTGATCATCCAATCACAGCTAAAGCCATTGCTAAGGGTGTAGGTATCATCTCTGAAAGCAGCGAGACTGTAGAAGACATCGCTGCTCGTCTGAACATCCCTGTGGAAGAAGTCAACCCCAGAGATGCAAAGGCCTGTGTGGTCCATGGTGGAGATCTAAAGAATATGAGCCCAGAGGAGCTGGATGATGTCTTAATACACCACAGTGAGATTGTGTTTGCCAGAACTTCTCCTCAGCAAAAACTCATTATTGTGGAAGGTTGCCAGCGGCAGGGTGCCATTGTGGCTGTGACTGGTGATGGTGTTAATGATTCTCCTGCTCTGAAGAAGGCTGACATTGGTGTAGCAATGGGTATTGCTGGATCTGACGTCTCCAAACAGGCTGCTGATATGATTCTCCTGGATGATAACTTTGCTTCTATTGTTACTGGAGTTGAAGAAGGCCGACTGATCTTTGACAACTTGAAGAAATCCATTGCATACACACTGACAAGTAAAATCCCTGAGATGTCACCCTTCCTCTTCTTTGTTATTGCGGGCATTCCTCTCGCTCTGGGCACGGTCACTATTTTATGTATTGATCTAGGAACTGATATGGTGCCAGCTATTTCTTTGGCCTATGAAGGTCCTGAGAGTGATATCATGAAGCGGCAGCCCAGAGATGCCAAGACAGACAAATTAGTCAATGAAAGGCTCATCAGTATGGCTTATGGACAAATTGGGATGATGCAAGCAGTTGGAGGGTTCTTCACTTACTTTGTAATCCTTGCTGAGAATGGATTCCTGCCCTTGTTTCTGATTGGACTGCGTGTAAATTGGGATGATCCATATAACAATGAGCTGGAGGACAGCTATGGCCAGCAGTGGacttATGAGCGCAGAAAAATTGTGGAGTACACATGTCACACTGCTTTTTTTGTCAGTATTGTGATTGTACAATGGACTGACCTAATCATCTGTAAGACCAGGACAAACTCACTGATACACCAGGGAATGAAAAATAAAGTCCTTAACTTTGGCCTTATGGAGGAAACAGCTTTGGCTGCATTTCTGTCATACTGTCCAGGCATGGATGTTGCTGTTAGAATGTATCCACTGAAACCATGGTGGTGGTTATGTCCTGTACCTTATTCACTCCTCATCTTCATCTACGACGAGGTCAGAAAATACTACCTTCGGCGGAACCCAGGAGGTTGGCTAGAAAAAGAGACATACTATTAAACCACAGTGACCCCTCTgctatgaacacacacacagtcaatcaTTGTGCAATGctgaaaataaagcatttttatttatacaataaatatCAGACTTCAACTcagaaaaaa

Function

symbol description
atp1a1a.4 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; immature eye; integument; nervous system; and pronephros. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).

GO:

id name namespace
GO:0006754 ATP biosynthetic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931936.2 True 3298 mRNA 0.45 22 5269510 5277092
XM_026931937.2 False 2545 mRNA 0.45 16 5269510 5275402

Neighbor

gene id symbol gene type direction distance location
LOC113537465 atp1a1a.1,LOC108258575,LOC108429870,LOC107653678,LOC107717912,LOC107718011,LOC107698904,LOC107555257 coding downstream 1312 5253693 ~ 5268198 (-)
brat1 brat1 coding downstream 156763 5069360 ~ 5112747 (-)
knstrn knstrn coding downstream 642269 4619201 ~ 4627241 (-)
cfap221 cfap221 coding downstream 650702 4596430 ~ 4618808 (-)
LOC117596183 NA coding downstream 744726 4524502 ~ 4524784 (-)
LOC113537467 atp1a1a.4,LOC108258577,LOC108429867,LOC108429865,LOC108429869,LOC108258578,LOC108258576,LOC108429866,LOC107717913,LOC107653679 coding upstream 11593 5288685 ~ 5316195 (-)
LOC113537353 atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265 coding upstream 54828 5331920 ~ 5340521 (-)
urp2 LOC108258299 coding upstream 132519 5409611 ~ 5412773 (-)
wu:fa56d06 LOC108258903 coding upstream 272461 5549553 ~ 5557090 (-)
n6amt1 n6amt1,LOC107563652 coding upstream 312680 5589772 ~ 5596095 (-)
G370845 NA non-coding downstream 19414 5249832 ~ 5250096 (-)
G370837 NA non-coding downstream 29234 5240065 ~ 5240276 (-)
G370836 NA non-coding downstream 31498 5236722 ~ 5238012 (-)
LOC113537335 NA non-coding downstream 77863 5190347 ~ 5191647 (-)
G370784 NA non-coding downstream 79210 5190075 ~ 5190300 (-)
G370853 NA non-coding upstream 65663 5342755 ~ 5343080 (-)
LOC113537484 NA non-coding upstream 68503 5345595 ~ 5365148 (-)
LOC113537576 NA non-coding upstream 138534 5415626 ~ 5429432 (-)
G370941 NA non-coding upstream 229020 5506112 ~ 5506317 (-)
G370942 NA non-coding upstream 231010 5508102 ~ 5508369 (-)
G370658 NA other downstream 380129 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 2416299 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 2695039 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 3436781 1824204 ~ 1832729 (-)
G369586 NA other downstream 3474286 1776319 ~ 1795224 (-)
LOC113537294 NA other upstream 111812 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 252900 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 664947 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 738634 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 1081547 6358639 ~ 6363203 (-)

Expression


Co-expression Network