LOC113537467 (atp1a1a.4,LOC108258577,LOC108429867,LOC108429865,LOC108429869,LOC108258578,LOC108258576,LOC108429866,LOC107717913,LOC107653679)


Basic Information

Item Value
gene id LOC113537467
gene name atp1a1a.4,LOC108258577,LOC108429867,LOC108429865,LOC108429869,LOC108258578,LOC108258576,LOC108429866,LOC107717913,LOC107653679
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5288685 ~ 5316195 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931938.2
CTAAGATATAAAGGTTTGTCTGCCAGGTTTGGACAAGGATATGCTTTGATTAGTTACTAGACAAAAACTTAAAATGGGGTTAGGGACAGGAAATGATAAGTACATGCTGGCTGCAAGTTcagaagaaggggaaaaaaagaagaaaaagaggaaggacATAAATGAACTTAAGAAAGAAGTGGATCTAGATGATCACAAGTTATCCTTAGATGAGCTGCACCATAAATATGGCACTGACATTAACAGAGGTTTGTCTGGTTCTCGAGCAAAGGAGATCCTTGAACGTGATGGACCCAATGTTCTGACGCCTCCTCCCACCACCCCAGAATGGGTCAAATTCTGCAAACAGCTCTTTGGTGGATTCTGTACACTACTGTGGATTGGAgcatttctttgtttcttgGCTTTTGCAATTCAGATAACTACTGAGAATGAGCCAGAAAATGATAATTTGTACTTGGGTATTGTGCTGGCCACAGTGGTGCTGATTACTGGATGCTTTTCATACTACCAAGAAGCTAAGAGCTCAAAGATCATGGACTCTTTCAAGAATCTTGTTCCCCATCAAGCTCTGGTTATTCGTGATGGTGAGAGAAAAAGCATTAATGCTGAAGAGGTTGTTGTTGGCGACTTGGTGGAAATCAAAGGTGGTGATAGAATTCCTGCCGATCTGCGCATTATTGCTGCTCATGGATGCAAGGTGGACAATTCCTCTCTTACTGGAGAATCTGAGCCGCAAACTCGTACTCCTGACTTCTCAAATGAAAATCCTCTAGAGACAAGGAATATTGTGTTCTTTTCCACAAATTGCCTGGAAGGTACAGCCAAAGGTATCGTCATCAACACTGGTGATCACACAGTTATGGGTCGTATTGCTATTCTTGCCTCAAGTCTTGAGGGTGGAAAGACACCCATTGCCATAGAGATTGAACACTTTATCCACATTATTACTGGTGTGGCTGTTTTCCTGGGCGTGTCCTTCTTCATCTTGTCCCTAATTCTTGGATATGGGTGGCTTGAAGCTGTCATCTTCCTTATTGGAATCATTGTTGCCAATGTGCCTGAGGGTCTGCTTGCAACAGTAACTGTGTGTTTAACTCTAACTGCTAAACGTATGGCAAAGAAGAACTGTCTAGTAAAGAATCTTGAAGCTGTAGAAACTCTTGGCTCCACCTCCACTATTTGCTCAGACAAAACAGGAACTCTGACTCAGAACCGTATGACCGTGGCACATATGTGGTTTGACAATCAAATTCATGAAGCCGATACCACAGAGGACCAAAGTGGAACCTCTTTTGACAGAAGCTCTCCCACTTGGTCTGCCCTGGCTCGTGTAGCTGGCCTCTGCAACCGTGCAGTCTTCCTTGGTGATCAGAGTAAAGTTCCAATACTTAAGAGAGATACAGCTGGTGATGCATCAGAGTCTGCCTTGTTAAAGTGTATTGAGCTCTGCTGTGGCTCAGTGAAGGAAATGAGAGACAAGTATCCAAAGCTTGCTGAGATCCCCTTCAACTCCACCAACAAATACCAGCTCTCAGTCCACAAAAACCCCAACTCTTCAGAGACTGAGCACATATTAGTAATGAAAGGAGCCCCTGAGAGCATTCTGTACAGGTGCTCGACCATTATGATTCAGGGGAAAGAGCAACCCTTGGATGAAGAGATGAAAGATGCTTTCCAACATGCCTATGTGAAGCTTGGGAGCCTTGGAGAAAGGGTATTAGGTTTCTGCCATTTCAGTCTCCCTGATGATCAGTTCCCTGAGGGCTTTGCATTTGACACAGAGGATGTAAACTTCACTACTGAGAATCTGTGCTTTCTTGGCCTCATGTCAATGATTGATCCTCCCCGTGCAGCTGTACCTGATGCTGTAGCTAAGTGCAGGAGTGCTGGAATCAAGGTTATCATGGTTACAGGAGATCATCCAATTACTGCTAAAGCCATTGCTAAGGGTGTGGGTATCATCTCTGAAGGCAATGAGACTGTGGAAGACATCGCTGCTCGTCTGAACGTCCCTGTTGGAGACGTCAACCCCAGACAGGCAAAGGCCTGTGTGGTCCATGGTGCAGAATTGAAGGAAATGACACCAGAGCAGCTGGACGATGTCTTGAAACACCACACTGAGATTGTATTTGCCAGAACATCTCCTCAGCAAAAACTGATTATTGTGGAAGGTTGCCAGAGACAAGGTGCCATTGTGGCTGTGACTGGTGATGGTGTTAATGATTCTCCTGCCCTGAAGAAGGCTGACATTGGAGTAGCAATGGGTATTGCTGGATCTGACGTCTCCAAACAGGCTGCTGATATGATTCTCCTGGATGATAACTTTGCTTCCATTGTTACTGGAGTAgaagaagGTCGTCTCATCTTTGACAACTTGAAAAAATCAATTGCTTACACCTTAACCAGTAACATTCCTGAGATTTCCCCCTTCCTCCTCTTCATTATTGCTGGCATTCCTCTCCCTCTTGGCACTGTCACTATACTTTGTATAGACTTGGGAACTGACATGgtGCCTGCTATTTCACTGGCATATGAAAGGGCTGAGAGTGACATCATGAAAAGACAGCCCAGAAACCCACAAAAAGACAAGCTAGTGAATGAAAGGCTAATCAGTATGGCTTATGGTCAGATTGgAATGATGCAGGCAGCTGCAGGTTTCTTCACTTATTTTGTAATCTTAGCTGAGAATGGATTCCTGCCTTCATACTTGATAGGACTGCGTATTGACTGGgatgataaatattttaatgacttGGAGGACAGTTATGGCCAACAGTGGaCTTTTGAGAGCAGAAAAATTGTAGAGTACACATGCCAGACAGCATTCTTTGTCAGTATTGTGATAGTGCAGTGGGCTGATTTGATCATCTGTAAGACCAGGATGAATTCCATTATACAGCAAAAAATGAAaaataaaatcctTATCTTTGGGCTTTTGGAGGAGACAGCTTTGGCTTCTTTTCTGTCATATTGTCCAGGCATGGATATTGCACTTAGAATGTATCCACTCAAACCATCATGGTGGTTATGTGCCTTACCATATGCCTTCCTCATCTTTATATATGATGAGACTAGAAGATACATCCTTAGACGGAACCCTGGAGgTTGGGTGGAAAAGGaaacatattattaaataaagaagatTTGCTTGCTTCCACTTCCATGGACACACATTAAATAAtccataataaatataatattaatgaatgtgatgcatttaattattaattgcattaaaagtataatcattaaaacaaagcaaattCCTTATTCAAGGTATGAAATAACTGTAAGTAATGGTATTCAACAGCCCAATAAAATCAAGTAATGCAA
>XM_026931939.2
GCAGAATCTCTGATGCATCTGCAGGACACAGACAAGAGGACTGGAGGGCAGGAGGACAGCTgctgaattttaataaaatagaaaaaaatgggaCTAGGAaggGGGAATGACAAATACAAGGTGGCTGCTGACACTGACAAAAGGGataataaagaaaagaacaggGATGAGCTGAAGAAAGAACTGGATCTGAGTGATCACAGGCTGACTTTGGATGAACTCCACCGGAAATATGGCACTGATCTTAACAGGGGTTTGTCCAGTTCCCGTGCAAAGGAGATCCTAGAACGTGATGGACCCAATGCTCTGACACCTCCTCCTACAACCCCAGAATGGATCAAGTTCTGCAGACAGCTCTTTGGTGGATTCTGTACATTATTGTGGATTGgagcttttctttgttttttggctTTTACTGTTCAGATTACTACAGAGAATGAACCAACAAATGATAATTTGTACCTGGGTGTTGTTCTGGCTGCAGTGGTGTtgatcactggatgtttttcataTTACCAAGAGGCTAAAAGCTCAAAAATTATGGATTCCTTCAAGAATCTTGTGCCACAGCAAGCACTAGTAGTTCGTGATGGTGAAAAGAAGGATATCAAAGCTGAGGATGTCGTCGTTGGTGACCTGGTAGAGATCAAGGGTGGAGATCGAATCCCTGCTGATCTGCGTATCATCACTGCACATGGATGCAAGGTGGACAACTCATCCCTTACCGGAGAATCTGAACCTCAACCTCGTACTCCTGAATTCTCCCATGATAATCCACTGGAGACAAAGAATATTGTGTTCTTTTCAACAAACTGTGTTGAAGGTTCTGCCACAGGTATTGTCATTAACACTGGTGATCGCACTGTGATGGGTCGAATTGCTACCCTGGCCTCAAGCCTCGAGGTGGGAAAGACCCCAATTGCCATAGAGATAGAGCACTTTATTCACATTATCACTACTGTGGCTGTGTTTCTGGGTGTCACATTTTGCACCCTGTCTCTCATTCTTGGATATGGCTGGTTGGAAGCTGTCATCTTTCTTATTGGAATCATTGTTGCCAATGTGCCTGAGGGTCTGCTTGCTACAGTAACTGTGTGTCTGACTTTAACTGCCAAACGTATGGCGAAGAAGAACTGTTTGGTGAAAAATCTTGAGGCAGTGGAGACACTTGGCTCTACCTCCACCATCTGCTCAGACAAGACAGGAACTCTGACTCAGAACCGTATGACTGTGGCACATATGTGGTTTGACAACCAGATTCATGAAGCAGATACCACAGAGGACCAAAGTGGAACCTCTTTTGACAGAAGCTCTCCCACTTGGTCTGCCCTGGCTCGTGTAGCTGGCCTCTGCAACCGTGCAGTCTTCCTTGCAGACCAAGCCAATGTTCCTATCCTTAAGAGAAATACCGCAGGAGATGCATCAGAGTCTGCCCTGCTGAAGTGTATTGAGCTCTGCTGTGGTTCAGTGAAGGATATAAGAGCCAAATACACAAAAGTGGCTGAGATCCCTTTCAATTCCACCAACAAATATCAGCTTTCAGTCCACAAGAACCCAAACGCCTCAGAAACCAAGCACCTGCTTTTAATGAAAGGTGCACCTGAGAGGATCCTGGACCGGTGCTCAACTATTATGATTCAAGGAAAAGAGCAACCCCTTGATGAAGAAATGAAGGATGCTTTCCAGAATGCATATATGAAACTAGGAGGTCTTGGAGAAAGAGTTCTAGGATTCTGCCAATTCAATCTCCCTGATGATCAGTTCCCTGGGGGCTTTACATTTGACACAGAGACAGTGAACTTCCCCACTGAGAATCTGTGCTTTCTTGGCCTCATGTCAATGATTGATCCTCCCCGTGCTGCTGTACCTGATGCTGTAGCTAAGTGCAGGAGTGCTGGAATCAAGGTTATCATGGTTACAGGAGATCATCCAATTACAGCTAAAGCCATTGCTAAGGGTGTGGGTATCATCTCTGAAGGCAATGAAACTGTGGAAGACATCGCTGCTCGTCTGAACATTTCCACTGGAGAGGTCAACCCCAGAGAGGCAAAGGCCTGTGTTGTTCACGGTGGGGAGTTGAAGGACATGACACCAGAGCAGTTGGATGACATCCTTAAATATCACACTGAGATTGTGTTTGCCAGAACGTCTCCTCAGCAAAAACTGATCATTGTGGAAGGCTGTCAGCGACAGGGTGCCATTGTGGCTGTGACTGGTGATGGTGTTAATGATTCTCCTGCTCTGAAGAAGGCTGACATCGGTGTAGCAATGGGTATTGCTGGATCTGACGTCTCCAAACAGGCTGCTGATATGATTCTCCTGGATGATAACTTTGCTTCCATTGTTACTGGAGTGGAGGAAGGCCGACTGATCTTTGACAACTTGAAGAAATCCATTGCATACACACTGACAAGTAAAATCCCTGAGATGTCACCCTTCCTCTTCTTTGTTATTGCGGGCATTCCTCTCGCTCTGGGCACGGTCACTATTTTATGTATTGATCTAGGAACTGATATGGTGCCTGCTATTTCTTTGGCCTATGAGGCTGCTGAGAGTGATATCATGAAGAGGCAACCCAGAAATGCCAAAACAGACAAATTGGTGAATGAGAGGCTAATCAGTATGGCTTATGGTCAGATTGGAATGATGCAGGCAGCAGCAGGGTTCTTTACCTACTTTGTCGTCCTTGCTGAGAATGGATTCATGCCACTATCTCTGATAGGACTGCGTATCAACTGGGACAGTAAAGATTACAATGACATGGAGGATGACTATGGCCAGCAATGGACATATGAGAGCAGAAAAATTCTGGAGTACACATGCCACACTGCATTCTTTGTCAGTATTGTTGTAGTGCAGGTGGCAGACTTGATCATCTGTAAGACCAGAGTTAATTCCATTGTGCAGCAGGGCATGAGGAAGAACAAAGTCCTCATCTTTGGTATTTTCGAGGAGACAGCCCTTGCAGCCTTCTTATCCTACTGTCCAGGAATGGATGTTGCTCTTAGAATGTATCCACTGAAACCATGGTGGTTGTTATGCGCTTTACCATATTCACTCCTCATTTTCTTCTATGATGAAACAAGAAGATACCTTCTCAGACGAAATCCAGGAGGCTGGGTGGAAAAGGAGACCTATTATTAAAGCAACCAACTATACCAACCACTAAATGCTGCCCACACCTTCACAATGTCctacacatttcatttcatcaataCAACTCAATGGATATTAAATtgtatgttaaataaacataagatTTCAATGGGA

Function

symbol description
atp1a1a.4 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; immature eye; integument; nervous system; and pronephros. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).

GO:

id name namespace
GO:0006754 ATP biosynthetic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931938.2 True 3336 mRNA 0.43 22 5305078 5316195
XM_026931939.2 False 3270 mRNA 0.45 22 5288685 5298173

Neighbor

gene id symbol gene type direction distance location
LOC113537466 atp1a1a.4,LOC108258574,LOC108429869,LOC108429865,LOC108258576,LOC107717913 coding downstream 11593 5269510 ~ 5277092 (-)
LOC113537465 atp1a1a.1,LOC108258575,LOC108429870,LOC107653678,LOC107717912,LOC107718011,LOC107698904,LOC107555257 coding downstream 20487 5253693 ~ 5268198 (-)
brat1 brat1 coding downstream 175938 5069360 ~ 5112747 (-)
knstrn knstrn coding downstream 661444 4619201 ~ 4627241 (-)
cfap221 cfap221 coding downstream 669877 4596430 ~ 4618808 (-)
LOC113537353 atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265 coding upstream 15725 5331920 ~ 5340521 (-)
urp2 LOC108258299 coding upstream 93416 5409611 ~ 5412773 (-)
wu:fa56d06 LOC108258903 coding upstream 233358 5549553 ~ 5557090 (-)
n6amt1 n6amt1,LOC107563652 coding upstream 273577 5589772 ~ 5596095 (-)
jam2a jam2 coding upstream 580141 5896336 ~ 5908867 (-)
G370845 NA non-coding downstream 38589 5249832 ~ 5250096 (-)
G370837 NA non-coding downstream 48409 5240065 ~ 5240276 (-)
G370836 NA non-coding downstream 50673 5236722 ~ 5238012 (-)
LOC113537335 NA non-coding downstream 97038 5190347 ~ 5191647 (-)
G370784 NA non-coding downstream 98385 5190075 ~ 5190300 (-)
G370853 NA non-coding upstream 26560 5342755 ~ 5343080 (-)
LOC113537484 NA non-coding upstream 29400 5345595 ~ 5365148 (-)
LOC113537576 NA non-coding upstream 99431 5415626 ~ 5429432 (-)
G370941 NA non-coding upstream 189917 5506112 ~ 5506317 (-)
G370942 NA non-coding upstream 191907 5508102 ~ 5508369 (-)
G370658 NA other downstream 399304 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 2435474 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 2714214 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 3455956 1824204 ~ 1832729 (-)
G369586 NA other downstream 3493461 1776319 ~ 1795224 (-)
LOC113537294 NA other upstream 72709 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 213797 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 625844 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 699531 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 1042444 6358639 ~ 6363203 (-)

Expression


Co-expression Network