LOC113537469 (LOC108258698,LOC108435966)


Basic Information

Item Value
gene id LOC113537469
gene name LOC108258698,LOC108435966
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11945834 ~ 11953213 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931942.2
TCGGGCGCGCATGCAGAAGGTGGAGCTTCAGGAAACGGTTAGCTGGCCGCTCGGCTTGTAGCGCGGAGATTATATTAAATTTTCTCTACTTGTACATTTACAGGTACAGAGCCGCCATGAGCGACAACGAGAAGGAGTTTGTGGTGAAAGAGTCCCGTTCTCGGAGTGTGAGTCCCAGAGGCTCCGTGAAGTCGAACAGCAACTCGCCGGGAAGATCTAAGGATGGTTCCCACCGCTCCCGCTCCAGATCCAAATCTCGCTCCAGGTCCAGGTCAAAGTCCAGGTCCAGGTCCCGTTCCCACCGGAGCTCTCGCCGTCGTCACTCCCGCTCACGCTCTCGAAGGCGCCACTCGCGTAGCCGCTCATACAGCCGCGAGTACCGACGCAGCCGCAGCCACTCGCCCATGTCCAATCGCAGACGGCACGTTGGCAACCGGGCGAACCCTGCCCCCAACTGCTGCCTGGGTGTGTTCGGCCTGAGCCTGTACACCACAGAGCGAGACCTGAGAGAAGTGTTCTCCAAATACGGCCCCCTCGCCAACGTCAACATTGTCTACGACCAGCAGTCTCGCCGCTCACGAGGCTTCGCCTTCGTCTACTTCGAGAACAGTGAGGACTCCAAggagGCTAAAGAGCAAGCTAATGGCATGGAGCTGGACGGCCGGCGTATCAGAGTGGACTTTTCCATCACCAagagaccacacacacccacacctggGATTTACATGGGACGGCCCACCTAtggaggtggtggaggaaGACCCAGCACATCCTCCAGTCGCTCCAGAGACTATTACGATCGGGGCTATGACCGTGGCTATGATCGGGATTACGACCGCTATGACGATAGGGAGTACTACAAATCCTACAGGCGCAGGTCTCCTTCACCATATTACGGTCGTGGAGGATACAGATCCCGGTCCCGCTCGCGGTCCTACTCCCCACGGCGCTACTGAGGAGTTACTGTATCTAATCGATGGAGGGGATTGTGTGCTCGTGGATGAAGAATAATGGAAGGATAGGAGTTTTAAGTTttggtggtgtggtgtgttttttttttttttttttttttttttttacttttgtgtattttaaatgcCATGCATGTTGATTTAATAGTCTTTGTTTGTGATAAGCTGTGCTTCTTCTACTTGTGTTAGATTGGCTACAAGCCACATTTGATGTTTAGCTTGAGGGGGTGTGTTATGTTGCAATACACCAGTGTGTCCCAGTCTAAATCTAAACAGCTGGGAAATCAGATGTAAATGCATATGTTGTCAATATCCAAGAAATAAACAGTATTTTACAACC

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12897 TRA2; transformer-2 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931942.2 True 1311 mRNA 0.52 9 11945834 11953213

Neighbor

gene id symbol gene type direction distance location
LOC117596169 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393,LOC107749880 coding downstream 2739 11941152 ~ 11943095 (-)
igf2bp2b igf2bp2,LOC108435967,LOC107699092,LOC107704342,LOC107596519 coding downstream 8707 11891674 ~ 11937127 (-)
vps8 vps8,LOC107699090,LOC107719737 coding downstream 79510 11769846 ~ 11866324 (-)
march4l march4,LOC108258493,LOC106596293,LOC107567720,LOC107663921,LOC107722703,LOC107558390 coding downstream 255314 11666909 ~ 11690520 (-)
alg11 alg11,LOC107556718,LOC107705036,LOC107588826 coding downstream 393112 11546974 ~ 11552722 (-)
ubac2 ubac2 coding upstream 3523 11956736 ~ 11984895 (-)
dachc LOC108259061,LOC108435962,LOC107732708,LOC107602747 coding upstream 43798 11997011 ~ 12061385 (-)
dis3 dis3,LOC107699072 coding upstream 140109 12093322 ~ 12107492 (-)
dlx2b LOC108258656 coding upstream 180262 12133475 ~ 12164139 (-)
ppp1r9alb LOC108258654,LOC105911690 coding upstream 239008 12192221 ~ 12215715 (-)
G374657 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393 non-coding downstream 2759 11934534 ~ 11943075 (-)
G374495 c26h3orf70 non-coding downstream 190719 11752574 ~ 11755115 (-)
G374442 NA non-coding downstream 276578 11668993 ~ 11669256 (-)
G374371 NA non-coding downstream 349595 11595192 ~ 11596239 (-)
G374370 NA non-coding downstream 350853 11593966 ~ 11594981 (-)
G374680 NA non-coding upstream 10591 11963804 ~ 11964781 (-)
G374727 NA non-coding upstream 139299 12092512 ~ 12092736 (-)
G374885 NA non-coding upstream 205495 12158708 ~ 12158915 (-)
G374935 NA non-coding upstream 369751 12322964 ~ 12323575 (-)
G374961 LOC108258298,LOC108258985,LOC108258304 non-coding upstream 483559 12436772 ~ 12437220 (-)
lipt1 lipt1 other downstream 1073278 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 1510467 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 2027055 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 3334993 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 3513396 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 125678 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 671838 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 1354500 13307713 ~ 13320530 (-)
G375428 NA other upstream 1486006 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 2019123 13972336 ~ 13980251 (-)

Expression


Co-expression Network