zgc:64002 (LOC108258972)


Basic Information

Item Value
gene id zgc:64002
gene name LOC108258972
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8289161 ~ 8291351 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931948.2
GAGGTTGGAGTTCTGCAATCCACAGTCCAGTGTCAACATCGTCACTGACGCAACACCAAAAGGACATAAAGAGGAAACGGTTCCTCCCGGTTTGCTCGTGCTTGCGATTCGGTTCACGTGATTCACTTTGAAGAGTCGCTTAAAAAAACCGAACGATTCGTTCGCGAGTTGTTTATTCTCCTTCACTGCTGACTGGAACCGTTTTACCGAATAAGCATGGCAGAGAGCGCTCAGTTCACTGAGGGGGATTACTATCAGGCGTGTTTTGACTCGAAAGCCTACATGAAAAATTTCTATTCCCGTCCAGAAGGACACTCGGAGGAGGAAGGCTATCTTACTTTCGTTTTAGGATGCCTAAGCAGGACCTTTTCGACTGGCCAGTACAAAGGTCAGAGGCTGATTGATGTGGGAAGCGGACCGACGATTCACACCGTAATCAGCGCGTGCGAGCACTTCGACGAGCTCGTGCTGTCTGATTTTGTAGACAGGAATCGTGAAGAAATCAAGAAATGGATAAAGAACGAGGAAGGGTGCTTTGACTGGAAGCCTCTCATTGAttatgtgtgtgaaatggatGGTAGGAGCTCATCTGATGTGGAAGCGAAACTGAGACAGCGGGTGAAACAAGTGCTGAAATGTGACGTCCTTTCAGAAAACCCTTTCCATCCAGAGAGTGTTGAACCAGCAGACTGTGTGATAACGTCCCTGTGTCTTGAGGCGGCGAGTAAAGACCTCCAGACGTACAGAAATGCACTTCGTAGAGTGGCAAAGCTGCTTCGTCCAGGTGGAGCTCTGGTGATGCTTGGGGTTTTAGGAGAGACCTTCTACTGTATTGACAAAATCCGCTTCTCCTGCCTCCAACTAAGCAAAGCAGATGTTGAAGATGTTCTCAGAAACCTTGACTTCACTGTGCAGGAATTTAAAATTTTTCCAGCACAAGATCAGGACAACAACAGAGTTTCAGATTTTGAAGCCATTTTTTATCTTGTCGCTCTGAAATCTACCAAGACATCTTAGGCACGTGCCAGTAGCCTAGCAGGTTATAAGACATACTGCAAACTTTTGTTAACAAATTATGTCATCATGAAGActgcaaataaaaatcttttattaacCATA

Function

NR:

description
nicotinamide N-methyltransferase-like

GO:

id name namespace
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K00541 NNMT; nicotinamide N-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931948.2 True 1119 mRNA 0.45 3 8289161 8291351

Neighbor

gene id symbol gene type direction distance location
LOC113537479 tceanc coding downstream 66618 8218639 ~ 8222543 (-)
rab9a rab9a,LOC108434684,LOC105902834,LOC107654259,LOC107667663 coding downstream 70966 8212903 ~ 8218195 (-)
u2af1 u2af1,LOC102219527,LOC105917412,LOC103389252,LOC101158751 coding downstream 131601 8150140 ~ 8157560 (-)
cbsa cbs,LOC107742639,LOC107654262,LOC107667662 coding downstream 140628 8132987 ~ 8148533 (-)
cryaa cryaa,LOC106939151 coding downstream 157978 8127561 ~ 8131183 (-)
gk gk,LOC108259045,LOC107700103,LOC107667651,LOC107742635 coding upstream 3528 8294879 ~ 8319843 (-)
poglut1 poglut1 coding upstream 38299 8329650 ~ 8336868 (-)
LOC113537751 vangl1,LOC107588836,LOC107552384,LOC107739810 coding upstream 64296 8355647 ~ 8415941 (-)
LOC113537664 zc3h12c,LOC108259022 coding upstream 238131 8529482 ~ 8554308 (-)
LOC113537579 NA coding upstream 264660 8556011 ~ 8569035 (-)
G372471 NA non-coding downstream 84937 8202768 ~ 8204224 (-)
G372307 NA non-coding downstream 272773 8016105 ~ 8016388 (-)
G372300 NA non-coding downstream 299963 7988950 ~ 7989198 (-)
G372288 NA non-coding downstream 312170 7976777 ~ 7976991 (-)
G372168 NA non-coding downstream 379609 7909124 ~ 7909552 (-)
G372522 NA non-coding upstream 137253 8428604 ~ 8444065 (-)
G372742 NA non-coding upstream 483681 8775032 ~ 8788141 (-)
LOC113537261 NA non-coding upstream 672234 8963585 ~ 8965621 (-)
G373288 NA non-coding upstream 1468390 9759741 ~ 9759949 (-)
G373292 neurl1,LOC107676877,LOC107746052 non-coding upstream 1472268 9763619 ~ 9764526 (-)
LOC113537489 NA other downstream 21889 8261435 ~ 8267272 (-)
cars2 cars2 other downstream 204622 8069402 ~ 8084539 (-)
fam155a LOC108258331 other downstream 296065 7912210 ~ 7993096 (-)
G372086 LOC108258915 other downstream 564366 7718263 ~ 7724795 (-)
LOC113537388 arhgap6 other downstream 810652 7357271 ~ 7478509 (-)
timmdc1 timmdc1 other upstream 29517 8320868 ~ 8329026 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other upstream 138211 8429562 ~ 8432438 (-)
tsga10 LOC108258346 other upstream 300056 8591407 ~ 8610841 (-)
LOC117596103 LOC102201964,LOC102304430 other upstream 1587492 9878843 ~ 9918779 (-)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 2130801 10422152 ~ 10435367 (-)

Expression


Co-expression Network