dachc (LOC108259061,LOC108435962,LOC107732708,LOC107602747)


Basic Information

Item Value
gene id dachc
gene name LOC108259061,LOC108435962,LOC107732708,LOC107602747
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11997011 ~ 12061385 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931985.2
GGGACAGAGACGAGCGGTCGGGGCGCGCGCTGCTGTCAGTCCTGTGCGCTGCGCTCGCGCTGTCACCGTCAGGCTTTGATCGATGCCGTGACTTCACACCGCCGCGTTTCACTTTAGAATCAAAACGGACTCTATAGTGTGTTTAGTAGCTTAATCCACTTTCCCTTTCTTTTGAAtcctaaaacagttttgtgatcattttccattaaaaaaaagttcactcTGAGAGATCATGGCCACGTCGGTTCCCTTGCTTCCATCAGCGCCGCTCGCGCATCATGCGCCTCCTCCGATTTCCATCTCCGCTTCGGCCGGTGGCGGCTCCTCCAGCCCGGCGAGTCTGTCTCCATCACCGTCATCGCTCGCTCCCTCGGCGGCTTCGAGCCTCTTCCGCTCGGACCTGCTGCCCTCTGCGAGTCCGGCTCTCCCGGTGGGCAGCGCGCCGCACAAGCCCGCGTATGCCACGCCGTCTCCGGTGGAGAGCACGCCGCGCAACAACGAGTGTCGCCTGGTGGAGGTGCGCGGCGCGCGCCTCGCCTCGTTCACCGTGGACGGCCGGGAGCTCATCTGCCTCCCGCAGGCGTTTGACCTCTTCCTGAAGCACCTGGTTGGCGGTTTGCACACCGTGTACACCAAGCTCAAGCGGCTGGAGATCACTCCGGTGGTGTGCAACGTGGAGCAGGTGCGCGTGTTGCGCGGGCTCGGCGCCATCCAGCCCGGTGTGAACCGCTGCAAGCTCATCTCGCGCAGAGACTTCGAGGTGCTCTACAACGACTGCACCAACGCCGGCTCCAGACCTGGCCGACCTCCGAAAAGGACTCAGAGTGTGACGTCCCCCGAGAGTCCACACATCCTGCCCCACTCCGTCTCTGGACTCATGTCCTCAGGAATCATGTCTCACACAGgtctGACAGCTGCTACTTTAGCCGAGGCCATGAAGAAGAAGATTAAACTGGAGGTTTTGAACAGTTACCACGGTACTAACAACCACGGTGCAGACCCTGAGAACGGAGACGTCAGCTCAGGCATGGCAGGTTTGGAGCTGCCGTTCATGATGATGTCACACCCTCTGATTCCTGTAAGCCTGCCCCCAGCCTCAGTTACCATGGCGATGAATCAGATGAACCACCTGAGCACCATCGCCAGCATGGCCGCCACTGCTCAGGTGCAGAACGACTCGAGCCGAGTGGCCACCTCCGTCATTAAGgagcGAGTGCGAGACAGTCCATCCCCATCTCCCTCTCTGGAGGACGGCCGCAGGTCAGGGAGCCACGTATCCTCCAGGCAGAGCAGCAGTGTGTCCAGTTCTCCTGCTCACACCGAGAGCTCGTCTGATCGGCCGCCTGTGCATCAGAATGGCCTTTCCTTGGGTCACGCTCTGTTAGGCCTGTCTCCGAACGCACCCCCAGGACCAAAAGAGGGGGATCTGGCAACCCAAGACGCTGGCCACGACTCAAGGAGGACGCATGCAGAAAAGGAAGAGAGCGTACTGTGCACGCCCACATCTCGCGAGACCTACGAGAGAGTTTCTCACACCATCCCCACGCTTCCTCCAGGCTTCCCTGCACCGCTGCTCTTCCCTGAGGGCCTGTCTTCCATAGAAACACTCCTCACTAACATCCAGggtctGCTGAAGGTGGCTATAGATAACGCCCGGGCGCAGGAGAAGCAGGTGCAGTTGGAGAAGACGGAGCTGAAGATGGAGCTTTATCGGGAGAGGGAACTACGTGAGACACTGGAGAGACAGCTCTGCGTGGAGCAGAAAAACCGAGCCCTCATCCAGAAGCGactgaagaaagagaaaaagacaaaacgGAAGCTCCAGGAAGCTCTCGAATATGAGTCCAAGCGACGTGACCAGGCTGAGCAGACGCTGCAGCAGACGACAGCCAGTGAGCACGCTCACACTCCAAACGAGCCTCCTGCTCCGGAAATGGAGACCGACCTGAGCAGGGACAGAACAGACGCAGACAGGACGATACCAGatgGACGGCTCTTTCTCAAGACTGCGGTGATGTTCTGAAGAAACAGAGCGAGAGAACATGTAAATCAGTGCGGAGTCGGAGGAAGCAGAAGTGCGAATAATCACAAACTATCGATTGTATCGGAGGACTAGAGACATTTCAAGGACCCCAAAGGGTCGGTGTCTACAAATTACTGCGAGGAGACTGTCACACGCATTGGAAATCAATGCTTTCATTGTGCCTCTCTGTGAAGTCGAGGCACCTTTTTCTTATCACAGAGGCTAAAAACACACCATGTGGACCttcacaacatttttttctagGATATTTAAACCACTCACACTTTACTGaccatgaaaaaaatatttcagagctTCTCTTTTATAGCCCTGACATGTTTAACTATCTATAAAGCACTATTTCCATCGGGGGGAAGAGTCTGATGAGTTGAGTTTATTCATCGTTTATTGAATATCTACatgacatttaatgtgttttcgTGTAGCTGTCTTGTTATTCCCAAAAGAAAGATtgtccatgttttttgttttttgtcattattatatGTTTGATGATTATAGCAGGTATTCtcaaacgaaaaaaaaaaaatcatgaaacatGGAACGTGTACATAAAAGTGTAGAGATAATATTGTGCATTGTATGTCGTAGCGCTGTTAGGAAATCAATACAAACCTCTTTAATGAAA
>XM_026931986.2
GGGACAGAGACGAGCGGTCGGGGCGCGCGCTGCTGTCAGTCCTGTGCGCTGCGCTCGCGCTGTCACCGTCAGGCTTTGATCGATGCCGTGACTTCACACCGCCGCGTTTCACTTTAGAATCAAAACGGACTCTATAGTGTGTTTAGTAGCTTAATCCACTTTCCCTTTCTTTTGAAtcctaaaacagttttgtgatcattttccattaaaaaaaagttcactcTGAGAGATCATGGCCACGTCGGTTCCCTTGCTTCCATCAGCGCCGCTCGCGCATCATGCGCCTCCTCCGATTTCCATCTCCGCTTCGGCCGGTGGCGGCTCCTCCAGCCCGGCGAGTCTGTCTCCATCACCGTCATCGCTCGCTCCCTCGGCGGCTTCGAGCCTCTTCCGCTCGGACCTGCTGCCCTCTGCGAGTCCGGCTCTCCCGGTGGGCAGCGCGCCGCACAAGCCCGCGTATGCCACGCCGTCTCCGGTGGAGAGCACGCCGCGCAACAACGAGTGTCGCCTGGTGGAGGTGCGCGGCGCGCGCCTCGCCTCGTTCACCGTGGACGGCCGGGAGCTCATCTGCCTCCCGCAGGCGTTTGACCTCTTCCTGAAGCACCTGGTTGGCGGTTTGCACACCGTGTACACCAAGCTCAAGCGGCTGGAGATCACTCCGGTGGTGTGCAACGTGGAGCAGGTGCGCGTGTTGCGCGGGCTCGGCGCCATCCAGCCCGGTGTGAACCGCTGCAAGCTCATCTCGCGCAGAGACTTCGAGGTGCTCTACAACGACTGCACCAACGCCGGCTCCAGACCTGGCCGACCTCCGAAAAGGACTCAGAGTGTGACGTCCCCCGAGAGTCCACACATCCTGCCCCACTCCGTCTCTGGACTCATGTCCTCAGGAATCATGTCTCACACAGgtctGACAGCTGCTACTTTAGCCGAGGCCATGAAGAAGAAGATTAAACTGGAGGTTTTGAACAGTTACCACGGTACTAACAACCACGGTGCAGACCCTGAGAACGGAGACGTCAGCTCAGGCATGGGTTTGGAGCTGCCGTTCATGATGATGTCACACCCTCTGATTCCTGTAAGCCTGCCCCCAGCCTCAGTTACCATGGCGATGAATCAGATGAACCACCTGAGCACCATCGCCAGCATGGCCGCCACTGCTCAGGTGCAGAACGACTCGAGCCGAGTGGCCACCTCCGTCATTAAGgagcGAGTGCGAGACAGTCCATCCCCATCTCCCTCTCTGGAGGACGGCCGCAGGTCAGGGAGCCACGTATCCTCCAGGCAGAGCAGCAGTGTGTCCAGTTCTCCTGCTCACACCGAGAGCTCGTCTGATCGGCCGCCTGTGCATCAGAATGGCCTTTCCTTGGGTCACGCTCTGTTAGGCCTGTCTCCGAACGCACCCCCAGGACCAAAAGAGGGGGATCTGGCAACCCAAGACGCTGGCCACGACTCAAGGAGGACGCATGCAGAAAAGGAAGAGAGCGTACTGTGCACGCCCACATCTCGCGAGACCTACGAGAGAGTTTCTCACACCATCCCCACGCTTCCTCCAGGCTTCCCTGCACCGCTGCTCTTCCCTGAGGGCCTGTCTTCCATAGAAACACTCCTCACTAACATCCAGggtctGCTGAAGGTGGCTATAGATAACGCCCGGGCGCAGGAGAAGCAGGTGCAGTTGGAGAAGACGGAGCTGAAGATGGAGCTTTATCGGGAGAGGGAACTACGTGAGACACTGGAGAGACAGCTCTGCGTGGAGCAGAAAAACCGAGCCCTCATCCAGAAGCGactgaagaaagagaaaaagacaaaacgGAAGCTCCAGGAAGCTCTCGAATATGAGTCCAAGCGACGTGACCAGGCTGAGCAGACGCTGCAGCAGACGACAGCCAGTGAGCACGCTCACACTCCAAACGAGCCTCCTGCTCCGGAAATGGAGACCGACCTGAGCAGGGACAGAACAGACGCAGACAGGACGATACCAGatgGACGGCTCTTTCTCAAGACTGCGGTGATGTTCTGAAGAAACAGAGCGAGAGAACATGTAAATCAGTGCGGAGTCGGAGGAAGCAGAAGTGCGAATAATCACAAACTATCGATTGTATCGGAGGACTAGAGACATTTCAAGGACCCCAAAGGGTCGGTGTCTACAAATTACTGCGAGGAGACTGTCACACGCATTGGAAATCAATGCTTTCATTGTGCCTCTCTGTGAAGTCGAGGCACCTTTTTCTTATCACAGAGGCTAAAAACACACCATGTGGACCttcacaacatttttttctagGATATTTAAACCACTCACACTTTACTGaccatgaaaaaaatatttcagagctTCTCTTTTATAGCCCTGACATGTTTAACTATCTATAAAGCACTATTTCCATCGGGGGGAAGAGTCTGATGAGTTGAGTTTATTCATCGTTTATTGAATATCTACatgacatttaatgtgttttcgTGTAGCTGTCTTGTTATTCCCAAAAGAAAGATtgtccatgttttttgttttttgtcattattatatGTTTGATGATTATAGCAGGTATTCtcaaacgaaaaaaaaaaaatcatgaaacatGGAACGTGTACATAAAAGTGTAGAGATAATATTGTGCATTGTATGTCGTAGCGCTGTTAGGAAATCAATACAAACCTCTTTAATGAAA
>XM_026931987.2
GGGACAGAGACGAGCGGTCGGGGCGCGCGCTGCTGTCAGTCCTGTGCGCTGCGCTCGCGCTGTCACCGTCAGGCTTTGATCGATGCCGTGACTTCACACCGCCGCGTTTCACTTTAGAATCAAAACGGACTCTATAGTGTGTTTAGTAGCTTAATCCACTTTCCCTTTCTTTTGAAtcctaaaacagttttgtgatcattttccattaaaaaaaagttcactcTGAGAGATCATGGCCACGTCGGTTCCCTTGCTTCCATCAGCGCCGCTCGCGCATCATGCGCCTCCTCCGATTTCCATCTCCGCTTCGGCCGGTGGCGGCTCCTCCAGCCCGGCGAGTCTGTCTCCATCACCGTCATCGCTCGCTCCCTCGGCGGCTTCGAGCCTCTTCCGCTCGGACCTGCTGCCCTCTGCGAGTCCGGCTCTCCCGGTGGGCAGCGCGCCGCACAAGCCCGCGTATGCCACGCCGTCTCCGGTGGAGAGCACGCCGCGCAACAACGAGTGTCGCCTGGTGGAGGTGCGCGGCGCGCGCCTCGCCTCGTTCACCGTGGACGGCCGGGAGCTCATCTGCCTCCCGCAGGCGTTTGACCTCTTCCTGAAGCACCTGGTTGGCGGTTTGCACACCGTGTACACCAAGCTCAAGCGGCTGGAGATCACTCCGGTGGTGTGCAACGTGGAGCAGGTGCGCGTGTTGCGCGGGCTCGGCGCCATCCAGCCCGGTGTGAACCGCTGCAAGCTCATCTCGCGCAGAGACTTCGAGGTGCTCTACAACGACTGCACCAACGCCGGCTCCAGACCTGGCCGACCTCCGAAAAGGACTCAGAGTGTGACGTCCCCCGAGAGTCCACACATCCTGCCCCACTCCGTCTCTGGACTCATGTCCTCAGGAATCATGTCTCACACAGGTTTGGAGCTGCCGTTCATGATGATGTCACACCCTCTGATTCCTGTAAGCCTGCCCCCAGCCTCAGTTACCATGGCGATGAATCAGATGAACCACCTGAGCACCATCGCCAGCATGGCCGCCACTGCTCAGGTGCAGAACGACTCGAGCCGAGTGGCCACCTCCGTCATTAAGgagcGAGTGCGAGACAGTCCATCCCCATCTCCCTCTCTGGAGGACGGCCGCAGGTCAGGGAGCCACGTATCCTCCAGGCAGAGCAGCAGTGTGTCCAGTTCTCCTGCTCACACCGAGAGCTCGTCTGATCGGCCGCCTGTGCATCAGAATGGCCTTTCCTTGGGTCACGCTCTGTTAGGCCTGTCTCCGAACGCACCCCCAGGACCAAAAGAGGGGGATCTGGCAACCCAAGACGCTGGCCACGACTCAAGGAGGACGCATGCAGAAAAGGAAGAGAGCGTACTGTGCACGCCCACATCTCGCGAGACCTACGAGAGAGTTTCTCACACCATCCCCACGCTTCCTCCAGGCTTCCCTGCACCGCTGCTCTTCCCTGAGGGCCTGTCTTCCATAGAAACACTCCTCACTAACATCCAGggtctGCTGAAGGTGGCTATAGATAACGCCCGGGCGCAGGAGAAGCAGGTGCAGTTGGAGAAGACGGAGCTGAAGATGGAGCTTTATCGGGAGAGGGAACTACGTGAGACACTGGAGAGACAGCTCTGCGTGGAGCAGAAAAACCGAGCCCTCATCCAGAAGCGactgaagaaagagaaaaagacaaaacgGAAGCTCCAGGAAGCTCTCGAATATGAGTCCAAGCGACGTGACCAGGCTGAGCAGACGCTGCAGCAGACGACAGCCAGTGAGCACGCTCACACTCCAAACGAGCCTCCTGCTCCGGAAATGGAGACCGACCTGAGCAGGGACAGAACAGACGCAGACAGGACGATACCAGatgGACGGCTCTTTCTCAAGACTGCGGTGATGTTCTGAAGAAACAGAGCGAGAGAACATGTAAATCAGTGCGGAGTCGGAGGAAGCAGAAGTGCGAATAATCACAAACTATCGATTGTATCGGAGGACTAGAGACATTTCAAGGACCCCAAAGGGTCGGTGTCTACAAATTACTGCGAGGAGACTGTCACACGCATTGGAAATCAATGCTTTCATTGTGCCTCTCTGTGAAGTCGAGGCACCTTTTTCTTATCACAGAGGCTAAAAACACACCATGTGGACCttcacaacatttttttctagGATATTTAAACCACTCACACTTTACTGaccatgaaaaaaatatttcagagctTCTCTTTTATAGCCCTGACATGTTTAACTATCTATAAAGCACTATTTCCATCGGGGGGAAGAGTCTGATGAGTTGAGTTTATTCATCGTTTATTGAATATCTACatgacatttaatgtgttttcgTGTAGCTGTCTTGTTATTCCCAAAAGAAAGATtgtccatgttttttgttttttgtcattattatatGTTTGATGATTATAGCAGGTATTCtcaaacgaaaaaaaaaaaatcatgaaacatGGAACGTGTACATAAAAGTGTAGAGATAATATTGTGCATTGTATGTCGTAGCGCTGTTAGGAAATCAATACAAACCTCTTTAATGAAA

Function

NR:

description
PREDICTED: dachshund homolog 1-like isoform X1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931985.2 True 2672 mRNA 0.54 11 11997011 12061385
XM_026931986.2 False 2669 mRNA 0.54 11 11997011 12061385
XM_026931987.2 False 2543 mRNA 0.54 10 11997011 12061385

Neighbor

gene id symbol gene type direction distance location
ubac2 ubac2 coding downstream 12116 11956736 ~ 11984895 (-)
LOC113537469 LOC108258698,LOC108435966 coding downstream 43798 11945834 ~ 11953213 (-)
LOC117596169 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393,LOC107749880 coding downstream 53916 11941152 ~ 11943095 (-)
igf2bp2b igf2bp2,LOC108435967,LOC107699092,LOC107704342,LOC107596519 coding downstream 59884 11891674 ~ 11937127 (-)
vps8 vps8,LOC107699090,LOC107719737 coding downstream 130687 11769846 ~ 11866324 (-)
dis3 dis3,LOC107699072 coding upstream 31937 12093322 ~ 12107492 (-)
dlx2b LOC108258656 coding upstream 72090 12133475 ~ 12164139 (-)
ppp1r9alb LOC108258654,LOC105911690 coding upstream 130836 12192221 ~ 12215715 (-)
kcnq5b LOC108258980 coding upstream 170335 12231720 ~ 12336307 (-)
rims1b LOC108259070,LOC108441990 coding upstream 281809 12343194 ~ 12399766 (-)
G374680 NA non-coding downstream 32230 11963804 ~ 11964781 (-)
G374657 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393 non-coding downstream 53936 11934534 ~ 11943075 (-)
G374495 c26h3orf70 non-coding downstream 241896 11752574 ~ 11755115 (-)
G374442 NA non-coding downstream 327755 11668993 ~ 11669256 (-)
G374371 NA non-coding downstream 400772 11595192 ~ 11596239 (-)
G374727 NA non-coding upstream 31127 12092512 ~ 12092736 (-)
G374885 NA non-coding upstream 97323 12158708 ~ 12158915 (-)
G374935 NA non-coding upstream 261579 12322964 ~ 12323575 (-)
G374961 LOC108258298,LOC108258985,LOC108258304 non-coding upstream 375387 12436772 ~ 12437220 (-)
G374962 NA non-coding upstream 375971 12437356 ~ 12437686 (-)
lipt1 lipt1 other downstream 1124455 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 1561644 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 2078232 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 3386170 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 3564573 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 17506 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 563666 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 1246328 13307713 ~ 13320530 (-)
G375428 NA other upstream 1377834 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 1910951 13972336 ~ 13980251 (-)

Expression


Co-expression Network