dlx2b (LOC108258656)


Basic Information

Item Value
gene id dlx2b
gene name LOC108258656
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 12133475 ~ 12164139 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931997.2
CAGCAGCAGAAGGGCTACAGTCAATAACTGTTCACCTAAAAATTAGGCTGTGTGATAGATTTACCTGATAAAGTGGCCACTGGGTGTATAATGAAGTACTCATTCTCAAAAAGTAATGccatccatccatccatgtatcCATTGGTTACTCACATGACGCCCCACATGATGTCCCCGCCCACTAGTTTGACTCCACCCACCACTATCTCGAACAGAGGGACTCGAAGCACCAATGCACCACCAGCAGTGTATTATGAGACTTCAGCAAGGACTCCTGTGAAGAAGCGCTGCCTCTACTGGGTCAAACATCTATCATTAAACAGCAAGTTCCATAAGACATCGGATCATAACCATATACCCAAGCGGGAGTATTGTCAGTTTGTTCAGATTGCTGCTTTAATTACTGCGAAGGTAATTACCAGAAGGAGAGGGGAGAGATGACCGCGGTTCTGGATAGCCTTGGTTCGGATATGCACACAACACATCTTACCTCCAGCAACTTCAGCGCCGTGCACAAGTCTCAGGACTCGCCCACACTGCCGGTGTCCACCGTCACCGACAGCAGTTTCTACAGCGTCCCTCAGAGCGCAAACTGCGCAGGAACGGCGGCTTACGCTCAGCTCGCCTCCTACTCGTACTCCCATGGCGGAGGGGTGAGCGGCGGACCCTACAGCCCCAAACCCTACGACATGGGCTTCGGCTCTTCATACGGCGCTTACGGCGCCTACGGACCCGGTTCTTCATCACCTACTCCTACAGAGCCAGAGAAAGACGAGAGCGAGCCGGAGGTGCGCATGGTGAACGGCAAGCCAAAGAAAGTCCGGAAACCGCGAACCATCTACTCCAGCTTCCAGCTGGCTGCCCTCCAACGCCGCTTCCAGAAGACACAGTACTTGGCGCTACCGGAGCGCGCAGAGCTCGCAGCCTCTCTGGGCCTCACGCAGACTCAGGTGAAGATCTGGTTTCAGAACCGGCGCTCCAAGTTCAAAAAGTTGTGGAAAAATGGGGAGATTCCGCCGGAGCAACACGTGGGCTCAGGTGACTCTCCTCCGgcgtctcctcctcctcacaccGCCTGGGATTTCCCCCCGAATCAACAAGCTGCAGGAGATGGGGACTCTAACACAGAGCAGGCCCCTGGTCCCCCAAACACCACTGCACCATCGTATTTGTCCAACTATCCATGGTACTCATCCACGAACGCGCATTTACAGCCAAGCGCGCTCTCGCAACCCCATCACAACTCCGCCATGAGCGCTGGTGCCATTTTCTAGCCATGAACTCGGGGATCGGATGCACCTGTTACAGGACAATGAACTTGTAGTGCACACACAGGCACGGAGAGATTAAAAAACACTAACTCTGACATGCAATTTGAATTCTGATGGTTTTTAGTTTCTTTTGCTGTGGATTTCCGTGGCGCGCTCGAGTGCGCAGAACGTGCAACAAATCGACgcacattaaattatttttctatttatttatttgttttgtttgcaatCGCAGGACAGTGGGACACATCACTtgccaagtaaaaaaaaaaacgggtaGCCTTTTATTGCGTGCATTGTACACTTTCCTATCAGACTA
>XM_034300194.1
CCACCCAAATCAGGAGTTGCAAAAGCCGCACCCTTTTACCTGTGCGAACTTCCGGTTGCACCAAAAGGAACCTCAGGCGGTAACTACagTCTAGGTATTTAAAGAGAAGGGGCCCACCTGCATCTGATAGTTCTTCATCGTGAAACCGGTTTTCCCCACAGCAGAAGACAACAAAGccatccatccatccatgtatcCATTGGTTACTCACATGACGCCCCACATGATGTCCCCGCCCACTAGTTTGACTCCACCCACCACTATCTCGAACAGAGGGACTCGAAGCACCAATGCACCACCAGCAGTGTATTATGAGACTTCAGCAAGGACTCCTGTGAAGAAGCGCTGCCTCTACTGGGTCAAACATCTATCATTAAACAGCAAGTTCCATAAGACATCGGATCATAACCATATACCCAAGCGGGAGTATTGTCAGTTTGTTCAGATTGCTGCTTTAATTACTGCGAAGGTAATTACCAGAAGGAGAGGGGAGAGATGACCGCGGTTCTGGATAGCCTTGGTTCGGATATGCACACAACACATCTTACCTCCAGCAACTTCAGCGCCGTGCACAAGTCTCAGGACTCGCCCACACTGCCGGTGTCCACCGTCACCGACAGCAGTTTCTACAGCGTCCCTCAGAGCGCAAACTGCGCAGGAACGGCGGCTTACGCTCAGCTCGCCTCCTACTCGTACTCCCATGGCGGAGGGGTGAGCGGCGGACCCTACAGCCCCAAACCCTACGACATGGGCTTCGGCTCTTCATACGGCGCTTACGGCGCCTACGGACCCGGTTCTTCATCACCTACTCCTACAGAGCCAGAGAAAGACGAGAGCGAGCCGGAGGTGCGCATGGTGAACGGCAAGCCAAAGAAAGTCCGGAAACCGCGAACCATCTACTCCAGCTTCCAGCTGGCTGCCCTCCAACGCCGCTTCCAGAAGACACAGTACTTGGCGCTACCGGAGCGCGCAGAGCTCGCAGCCTCTCTGGGCCTCACGCAGACTCAGGTGAAGATCTGGTTTCAGAACCGGCGCTCCAAGTTCAAAAAGTTGTGGAAAAATGGGGAGATTCCGCCGGAGCAACACGTGGGCTCAGGTGACTCTCCTCCGgcgtctcctcctcctcacaccGCCTGGGATTTCCCCCCGAATCAACAAGCTGCAGGAGATGGGGACTCTAACACAGAGCAGGCCCCTGGTCCCCCAAACACCACTGCACCATCGTATTTGTCCAACTATCCATGGTACTCATCCACGAACGCGCATTTACAGCCAAGCGCGCTCTCGCAACCCCATCACAACTCCGCCATGAGCGCTGGTGCCATTTTCTAGCCATGAACTCGGGGATCGGATGCACCTGTTACAGGACAATGAACTTGTAGTGCACACACAGGCACGGAGAGATTAAAAAACACTAACTCTGACATGCAATTTGAATTCTGATGGTTTTTAGTTTCTTTTGCTGTGGATTTCCGTGGCGCGCTCGAGTGCGCAGAACGTGCAACAAATCGACgcacattaaattatttttctatttatttatttgttttgtttgcaatCGCAGGACAGTGGGACACATCACTtgccaagtaaaaaaaaaaacgggtaGCCTTTTATTGCGTGCATTGTACACTTTCCTATCAGACTA
>XM_034300195.1
TAGGGCGTGGCCTCTTTACCTCAGACTAACGGTCGCGGTTCCTCGCTAAGGATTTATctgttttatatcattttttaacaAGATATTTATGTTTAAGCATTTTATTGAATCTGTGTGCTTGGAAAACGCCTCGCAATCTAGGTATTTAAAGAGAAGGGGCCCACCTGCATCTGATAGTTCTTCATCGTGAAACCGGTTTTCCCCACAGCAGAAGACAACAAAGccatccatccatccatgtatcCATTGGTTACTCACATGACGCCCCACATGATGTCCCCGCCCACTAGTTTGACTCCACCCACCACTATCTCGAACAGAGGGACTCGAAGCACCAATGCACCACCAGCAGTGTATTATGAGACTTCAGCAAGGACTCCTGTGAAGAAGCGCTGCCTCTACTGGGTCAAACATCTATCATTAAACAGCAAGTTCCATAAGACATCGGATCATAACCATATACCCAAGCGGGAGTATTGTCAGTTTGTTCAGATTGCTGCTTTAATTACTGCGAAGGTAATTACCAGAAGGAGAGGGGAGAGATGACCGCGGTTCTGGATAGCCTTGGTTCGGATATGCACACAACACATCTTACCTCCAGCAACTTCAGCGCCGTGCACAAGTCTCAGGACTCGCCCACACTGCCGGTGTCCACCGTCACCGACAGCAGTTTCTACAGCGTCCCTCAGAGCGCAAACTGCGCAGGAACGGCGGCTTACGCTCAGCTCGCCTCCTACTCGTACTCCCATGGCGGAGGGGTGAGCGGCGGACCCTACAGCCCCAAACCCTACGACATGGGCTTCGGCTCTTCATACGGCGCTTACGGCGCCTACGGACCCGGTTCTTCATCACCTACTCCTACAGAGCCAGAGAAAGACGAGAGCGAGCCGGAGGTGCGCATGGTGAACGGCAAGCCAAAGAAAGTCCGGAAACCGCGAACCATCTACTCCAGCTTCCAGCTGGCTGCCCTCCAACGCCGCTTCCAGAAGACACAGTACTTGGCGCTACCGGAGCGCGCAGAGCTCGCAGCCTCTCTGGGCCTCACGCAGACTCAGGTGAAGATCTGGTTTCAGAACCGGCGCTCCAAGTTCAAAAAGTTGTGGAAAAATGGGGAGATTCCGCCGGAGCAACACGTGGGCTCAGGTGACTCTCCTCCGgcgtctcctcctcctcacaccGCCTGGGATTTCCCCCCGAATCAACAAGCTGCAGGAGATGGGGACTCTAACACAGAGCAGGCCCCTGGTCCCCCAAACACCACTGCACCATCGTATTTGTCCAACTATCCATGGTACTCATCCACGAACGCGCATTTACAGCCAAGCGCGCTCTCGCAACCCCATCACAACTCCGCCATGAGCGCTGGTGCCATTTTCTAGCCATGAACTCGGGGATCGGATGCACCTGTTACAGGACAATGAACTTGTAGTGCACACACAGGCACGGAGAGATTAAAAAACACTAACTCTGACATGCAATTTGAATTCTGATGGTTTTTAGTTTCTTTTGCTGTGGATTTCCGTGGCGCGCTCGAGTGCGCAGAACGTGCAACAAATCGACgcacattaaattatttttctatttatttatttgttttgtttgcaatCGCAGGACAGTGGGACACATCACTtgccaagtaaaaaaaaaaacgggtaGCCTTTTATTGCGTGCATTGTACACTTTCCTATCAGACTA
>XM_034300196.1
TAGGGCGTGGCCTCTTTACCTCAGACTAACGGTCGCGGTTCCTCGCTAAGGATTTATctgttttatatcattttttaacaAGATATTTATGTTTAAGCATTTTATTGAATCTGTGTGCTTGGAAAACGCCTCGCAAccatccatccatccatgtatcCATTGGTTACTCACATGACGCCCCACATGATGTCCCCGCCCACTAGTTTGACTCCACCCACCACTATCTCGAACAGAGGGACTCGAAGCACCAATGCACCACCAGCAGTGTATTATGAGACTTCAGCAAGGACTCCTGTGAAGAAGCGCTGCCTCTACTGGGTCAAACATCTATCATTAAACAGCAAGTTCCATAAGACATCGGATCATAACCATATACCCAAGCGGGAGTATTGTCAGTTTGTTCAGATTGCTGCTTTAATTACTGCGAAGGTAATTACCAGAAGGAGAGGGGAGAGATGACCGCGGTTCTGGATAGCCTTGGTTCGGATATGCACACAACACATCTTACCTCCAGCAACTTCAGCGCCGTGCACAAGTCTCAGGACTCGCCCACACTGCCGGTGTCCACCGTCACCGACAGCAGTTTCTACAGCGTCCCTCAGAGCGCAAACTGCGCAGGAACGGCGGCTTACGCTCAGCTCGCCTCCTACTCGTACTCCCATGGCGGAGGGGTGAGCGGCGGACCCTACAGCCCCAAACCCTACGACATGGGCTTCGGCTCTTCATACGGCGCTTACGGCGCCTACGGACCCGGTTCTTCATCACCTACTCCTACAGAGCCAGAGAAAGACGAGAGCGAGCCGGAGGTGCGCATGGTGAACGGCAAGCCAAAGAAAGTCCGGAAACCGCGAACCATCTACTCCAGCTTCCAGCTGGCTGCCCTCCAACGCCGCTTCCAGAAGACACAGTACTTGGCGCTACCGGAGCGCGCAGAGCTCGCAGCCTCTCTGGGCCTCACGCAGACTCAGGTGAAGATCTGGTTTCAGAACCGGCGCTCCAAGTTCAAAAAGTTGTGGAAAAATGGGGAGATTCCGCCGGAGCAACACGTGGGCTCAGGTGACTCTCCTCCGgcgtctcctcctcctcacaccGCCTGGGATTTCCCCCCGAATCAACAAGCTGCAGGAGATGGGGACTCTAACACAGAGCAGGCCCCTGGTCCCCCAAACACCACTGCACCATCGTATTTGTCCAACTATCCATGGTACTCATCCACGAACGCGCATTTACAGCCAAGCGCGCTCTCGCAACCCCATCACAACTCCGCCATGAGCGCTGGTGCCATTTTCTAGCCATGAACTCGGGGATCGGATGCACCTGTTACAGGACAATGAACTTGTAGTGCACACACAGGCACGGAGAGATTAAAAAACACTAACTCTGACATGCAATTTGAATTCTGATGGTTTTTAGTTTCTTTTGCTGTGGATTTCCGTGGCGCGCTCGAGTGCGCAGAACGTGCAACAAATCGACgcacattaaattatttttctatttatttatttgttttgtttgcaatCGCAGGACAGTGGGACACATCACTtgccaagtaaaaaaaaaaacgggtaGCCTTTTATTGCGTGCATTGTACACTTTCCTATCAGACTA

Function

NR:

description
homeobox protein Dlx2b

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K18488 DLX2; homeobox protein DLX2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931997.2 False 1590 mRNA 0.52 4 12133475 12137332
XM_034300194.1 False 1648 mRNA 0.52 5 12133475 12162945
XM_034300195.1 True 1695 mRNA 0.51 5 12133475 12164139
XM_034300196.1 False 1608 mRNA 0.52 4 12133475 12164139

Neighbor

gene id symbol gene type direction distance location
dis3 dis3,LOC107699072 coding downstream 25983 12093322 ~ 12107492 (-)
dachc LOC108259061,LOC108435962,LOC107732708,LOC107602747 coding downstream 72090 11997011 ~ 12061385 (-)
ubac2 ubac2 coding downstream 148580 11956736 ~ 11984895 (-)
LOC113537469 LOC108258698,LOC108435966 coding downstream 180262 11945834 ~ 11953213 (-)
LOC117596169 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393,LOC107749880 coding downstream 190380 11941152 ~ 11943095 (-)
ppp1r9alb LOC108258654,LOC105911690 coding upstream 28082 12192221 ~ 12215715 (-)
kcnq5b LOC108258980 coding upstream 67581 12231720 ~ 12336307 (-)
rims1b LOC108259070,LOC108441990 coding upstream 179055 12343194 ~ 12399766 (-)
cenpk cenpk coding upstream 242891 12407030 ~ 12413031 (-)
lbx1b LOC108258340 coding upstream 254329 12418468 ~ 12420555 (-)
G374727 NA non-coding downstream 40739 12092512 ~ 12092736 (-)
G374680 NA non-coding downstream 168694 11963804 ~ 11964781 (-)
G374657 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393 non-coding downstream 190400 11934534 ~ 11943075 (-)
G374495 c26h3orf70 non-coding downstream 378360 11752574 ~ 11755115 (-)
G374442 NA non-coding downstream 464219 11668993 ~ 11669256 (-)
G374935 NA non-coding upstream 158825 12322964 ~ 12323575 (-)
G374961 LOC108258298,LOC108258985,LOC108258304 non-coding upstream 272633 12436772 ~ 12437220 (-)
G374962 NA non-coding upstream 273217 12437356 ~ 12437686 (-)
G374963 NA non-coding upstream 277182 12441321 ~ 12441539 (-)
G375001 NA non-coding upstream 362481 12526620 ~ 12526819 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 49426 12078891 ~ 12084049 (-)
lipt1 lipt1 other downstream 1260919 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 1698108 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 2214696 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 3522634 8591407 ~ 8610841 (-)
LOC113537246 NA other upstream 460912 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 1143574 13307713 ~ 13320530 (-)
G375428 NA other upstream 1275080 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 1808197 13972336 ~ 13980251 (-)
pibf1 pibf1 other upstream 1818606 13982745 ~ 14016151 (-)

Expression


Co-expression Network