LOC113537507 (psmb8a,psmb8,LOC108258500,LOC108258501,LOC107694758,LOC107549856,LOC107554342)


Basic Information

Item Value
gene id LOC113537507
gene name psmb8a,psmb8,LOC108258500,LOC108258501,LOC107694758,LOC107549856,LOC107554342
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11399622 ~ 11402573 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932007.2
CAGGAAGTCTTCCTGAACACTGATGAGGTGACAAGACCAGCGCTTTCACTGGACAGgaatttgcttttttttattcattattcatcgTTTTAAACAGAGCATGGCCCTTTTGGAAGTGAGTGGATCCTCGTCTCATTCCGGACTCGGCTCTCAGTTCGCCTCAAACCGGATGCAGTTTGTTGATCGACTGAGCCACTACAGCTTTGGGACAAAATGTCAGGAATTTGCTGTACCAGTTGGGGTTGATCCGTCAGCCTTTCTGAAATCATGTAGTTGTGATGATGGGATATCAATAGACTTGAACCACGGCACCACGACACTGGCTTTTAAGTTCCGCCATGGCGTCATTGTAGCCGTCGACTCCAGGGCCTCAGCTGGACGCTATATTGcttCAAAGGAGGCGAATAAGGTGATCGAGATCAACCCTTACCTGCTGGGCACCATGTCTGGTAGTGCAGCAGACTGTCAGTATTGGGAGAGGCTTCTGGCTAAGGAGTGCAGGCTTTACCAGCTCCGTAACAAACAGAGGATCTCAGTGTCTGCAGCTTCCAAGCTGCTGTCCAACATGATGCTTGGTTATAGAGGCATGGGCCTGTCCATGGGTAGCATGATCTGTGGCTGGGACAAGAAGGGTCCTGGTCTGTATTATGTCGATGACAACGGAACACGTCTCTCAGGGAAGATGTTTTCCACGGGCTGTGGGAACAGCTATGCATATGGGGTGATAGACAGTGGCTACCATGAGGATATGACTGTGGAAGAGGCTTATGAGCTTGGCCGCCGTGGTATTGCTCACGCCACACACAGAGACGCCTACTCTGGTGGAGTTGTGAACCTCTATCACATGAAGGAGGACGGTTGGATTAAGGTGTGCAAGGAGGACGTATCAGATCTAATCCATCAGTACAGGAAGGGAATGTTCTGAACCCACAGATTATTttatactcacacactaatACTGTATCTGACACAATTCATTAATGGAAAATAAAGCTGGCTTTCAAACCAAA
>XM_026932009.2
GCAGGCAGGAAGTCTTCCTGAACACTGATGAGGTGACAAGACCAGCGCTTTCACTGGACAGAGCATGGCCCTTTTGGAAGTGAGTGGATCCTCGTCTCATTCCGGACTCGGCTCTCAGTTCGCCTCAAACCGGATGCAGTTTGTTGATCGACTGAGCCACTACAGCTTTGGGACAAAATGTCAGGAATTTGCTGTACCAGTTGGGGTTGATCCGTCAGCCTTTCTGAAATCATGTAGTTGTGATGATGGGATATCAATAGACTTGAACCACGGCACCACGACACTGGCTTTTAAGTTCCGCCATGGCGTCATTGTAGCCGTCGACTCCAGGGCCTCAGCTGGACGCTATATTGcttCAAAGGAGGCGAATAAGGTGATCGAGATCAACCCTTACCTGCTGGGCACCATGTCTGGTAGTGCAGCAGACTGTCAGTATTGGGAGAGGCTTCTGGCTAAGGAGTGCAGGCTTTACCAGCTCCGTAACAAACAGAGGATCTCAGTGTCTGCAGCTTCCAAGCTGCTGTCCAACATGATGCTTGGTTATAGAGGCATGGGCCTGTCCATGGGTAGCATGATCTGTGGCTGGGACAAGAAGGGTCCTGGTCTGTATTATGTCGATGACAACGGAACACGTCTCTCAGGGAAGATGTTTTCCACGGGCTGTGGGAACAGCTATGCATATGGGGTGATAGACAGTGGCTACCATGAGGATATGACTGTGGAAGAGGCTTATGAGCTTGGCCGCCGTGGTATTGCTCACGCCACACACAGAGACGCCTACTCTGGTGGAGTTGTGAACCTCTATCACATGAAGGAGGACGGTTGGATTAAGGTGTGCAAGGAGGACGTATCAGATCTAATCCATCAGTACAGGAAGGGAATGTTCTGAACCCACAGATTATTttatactcacacactaatACTGTATCTGACACAATTCATTAATGGAAAATAAAGCTGGCTTTCAAACCAAA
>XM_034300301.1
GGTGTTTGACAATTTTATGGAGATACTTCAATAAATACGGTAAAACAACCTAGTCATAAGCgaaagtaaaataaagcagCATCGTTTGAGCTTTCGGTTTCGAAAAGCATGGCCCTTTTGGAAGTGAGTGGATCCTCGTCTCATTCCGGACTCGGCTCTCAGTTCGCCTCAAACCGGATGCAGTTTGTTGATCGACTGAGCCACTACAGCTTTGGGACAAAATGTCAGGAATTTGCTGTACCAGTTGGGGTTGATCCGTCAGCCTTTCTGAAATCATGTAGTTGTGATGATGGGATATCAATAGACTTGAACCACGGCACCACGACACTGGCTTTTAAGTTCCGCCATGGCGTCATTGTAGCCGTCGACTCCAGGGCCTCAGCTGGACGCTATATTGcttCAAAGGAGGCGAATAAGGTGATCGAGATCAACCCTTACCTGCTGGGCACCATGTCTGGTAGTGCAGCAGACTGTCAGTATTGGGAGAGGCTTCTGGCTAAGGAGTGCAGGCTTTACCAGCTCCGTAACAAACAGAGGATCTCAGTGTCTGCAGCTTCCAAGCTGCTGTCCAACATGATGCTTGGTTATAGAGGCATGGGCCTGTCCATGGGTAGCATGATCTGTGGCTGGGACAAGAAGGGTCCTGGTCTGTATTATGTCGATGACAACGGAACACGTCTCTCAGGGAAGATGTTTTCCACGGGCTGTGGGAACAGCTATGCATATGGGGTGATAGACAGTGGCTACCATGAGGATATGACTGTGGAAGAGGCTTATGAGCTTGGCCGCCGTGGTATTGCTCACGCCACACACAGAGACGCCTACTCTGGTGGAGTTGTGAACCTCTATCACATGAAGGAGGACGGTTGGATTAAGGTGTGCAAGGAGGACGTATCAGATCTAATCCATCAGTACAGGAAGGGAATGTTCTGAACCCACAGATTATTttatactcacacactaatACTGTATCTGACACAATTCATTAATGGAAAATAAAGCTGGCTTTCAAACCAAA

Function

symbol description
psmb8a Predicted to enable endopeptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteolysis involved in cellular protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in JMP syndrome. Orthologous to human PSMB8 (proteasome 20S subunit beta 8).
psmb8 Predicted to enable endopeptidase activity. Involved in fat cell differentiation and regulation of endopeptidase activity. Located in extracellular exosome. Part of proteasome complex. Implicated in JMP syndrome.

GO:

id name namespace
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02740 PSMB8, LMP7; 20S proteasome subunit beta 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932007.2 False 1010 mRNA 0.48 7 11399622 11402568
XM_026932009.2 False 974 mRNA 0.49 7 11399622 11402573
XM_034300301.1 True 1018 mRNA 0.48 7 11399622 11402431

Neighbor

gene id symbol gene type direction distance location
psmb12 pb9la,lmp2/d,LOC108433731,LOC103024673,LOC106569959,LOC106588399 coding downstream 8420 11385636 ~ 11391202 (-)
psmb9a psmb9-a,psmb9-b,psmb9a,LOC108258508,LOC108433730,LOC103024362 coding downstream 15351 11380912 ~ 11384271 (-)
LOC113537638 LOC108258487,LOC108258488 coding downstream 19819 11374505 ~ 11379803 (-)
LOC113537567 LOC108258496,LOC108428189 coding downstream 29567 11361426 ~ 11370055 (-)
si:ch211-239f4.1 evi5l,LOC108258486,LOC108428244,LOC107676895,LOC107718810,LOC107692153 coding downstream 47241 11312765 ~ 11352381 (-)
psmb13a LOC108258499,LOC108433729,LOC103024985,LOC106569958,LOC107104818 coding upstream 1543 11404116 ~ 11410114 (-)
tspan34 NA coding upstream 31941 11434514 ~ 11446094 (-)
rab3da rab3da,LOC108258507,LOC108435977,LOC103040938,LOC107757002,LOC107747429,LOC107675349,LOC107569532 coding upstream 45806 11448379 ~ 11464622 (-)
pld6 pld6 coding upstream 64831 11467404 ~ 11471543 (-)
trnar-ucu_14 NA coding upstream 70307 11472880 ~ 11472971 (-)
G374230 ddx39aa,ddx39ab,LOC100304672,LOC107603018,LOC107692155,LOC105901571 non-coding downstream 39201 11358843 ~ 11360421 (-)
G374198 grin2b,grin2bb,LOC108258482,LOC107603025,LOC107551907,LOC107676879 non-coding downstream 156785 11238241 ~ 11242837 (-)
G374196 LOC108258482,LOC107676879,LOC107551907,LOC107603025,LOC107692185 non-coding downstream 162191 11237062 ~ 11237431 (-)
G374111 NA non-coding downstream 251949 11147454 ~ 11147673 (-)
G374105 NA non-coding downstream 259811 11139183 ~ 11139811 (-)
G374370 NA non-coding upstream 191393 11593966 ~ 11594981 (-)
G374371 NA non-coding upstream 192619 11595192 ~ 11596239 (-)
G374442 NA non-coding upstream 266420 11668993 ~ 11669256 (-)
G374495 c26h3orf70 non-coding upstream 350001 11752574 ~ 11755115 (-)
G374657 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393 non-coding upstream 531961 11934534 ~ 11943075 (-)
lipt1 lipt1 other downstream 527066 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 964255 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 1480843 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 2788781 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 2967184 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 676318 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 1222478 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 1905140 13307713 ~ 13320530 (-)
G375428 NA other upstream 2036646 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 2569763 13972336 ~ 13980251 (-)

Expression


Co-expression Network