gja8b (gja8,cx44.1,LOC108258942,LOC107566539)


Basic Information

Item Value
gene id gja8b
gene name gja8,cx44.1,LOC108258942,LOC107566539
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 9968451 ~ 9970159 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932036.2
ATGGGTGACTGGAGTTTCTTGGGCAACATCCTTGAGGAAGTCAATGAGCACTCGACGGTTATCGGTAGGGTGTGGCTGACTGTGCTCTTTATCTTTCGCATTCTGATCCTCGGCACTGCGGCAGAGTTCGTATGGGGCGACGAGCAGTCGGATTACGTCTGCAACACACAGCAGCCCGGTTGCGAGAACGtctgctatgatgaggccttcCCCATTTCACACATACGCCTGTGGGTTCTGCAGATCATCTTTGTCTCCACGCCGTCACTGGTGTATGTGGGCCACGCAGTGCACCATGTTCACATGGAAGAGAAACGTAAGGAACGTGAGGAGGCAGAGCTGAGCCGGCAACAGGAGACAGGTGAAGAGCGGCTGCCAGTTGCTCCTGACCAGGGTAGTGTCCGTACAGCCAAAGAGACCAGCACCAAAGGCAGCAAGAAGTTCCGCTTGGAAGGCACACTGCTCAGAACCTACATCTGCCACATCATCTTCAAAACATTCTTTGAGGTAGGGTTTGTCGTGGGCCAATACTTCCTGTATGGCTTTCGCATCCTGCCTCTGTACAAGTGCAGCCGCTGGCCCTGCCCCAACACAGTCGACTGCTTCGTGTCAAGGCCAACTGAAAAGACTGTCTTCATTATCTTTATGTTAGCTGTGGCCTGTGTCTCACTCTTCCTTAACTTTGTAGAGATCAGCCACTTGGGCCTCAAGAAGATTCACTTTGCATTTCGCAAACCAGCCCAGCCCCAAATTGAGGGATCTGGTGCAGGTGAGAAGCCTTCCATAGCTGTGTCCTCTATTCAGAAAGCCAAAGGCTACAAGTTACTGGACGAGGACAAAACAGTTTCACACTTCTTTCCCCTGACTGAGGTGGCTGGCATGGAGGCTGGGTGTGTGCCCACATCCTATAAAccatttgggggaaaaacagaTGGAGCGACAGCGCCACGGGGAGACATGTCGAAGATGTATGAGGAGACCTTGCCCTCTTATGTCCAGACTACCATGGTGGGGCTCAAAGGAGCTACTGGCGTTATTCGGGTGGACGAGGATGAAATGCCTGGAGAAGAAGACGTGGAAGCCAGCGAGACAATAGAGGACAACAGACCCCTCAGTAGCCTGAGCAAGGCCAGCAGCCGGGCGAGGTCAGATGACTTGACAGTATAAAATTAGATTAAAATTCAACAACATGAAAATGTAATCCTACTGAAGAAAGATTTAAAAGGTCTTAAGGCAGTTGTAATGACACATGTAAACATCTTTCTATTTAAACATGCCATGCAATTTTTCCCCAAGAATACCTGAGTTCGTTAATTTTGTACTGTCTTTATCAAATGAATTGGAAACAACTAACTAACTTACCAGAAGAAAGATTCTCAGTAGGATTCATACGGTGATGAGCAATAAGGCATGTTatatattagcaaaaaaaagttGGTTTTTTAAAAACCATATTTTCTATCcagaattttaattttacattctAATCCAAGTAGCCAAATtctaatgtttacattttttccattaGCCATTTAGTTCAAtgttgtatgtatgttttattactATTGTTTTGGGATTTCGGCAGATTATTTCTGCAATGCTGTCAGGGTAACATCATTTTCACCTCAATAACTCATCCAAATACAAGTACAACaactgatcagtaatggtttcactctgtgtgtgtattgtccTTTCTGTAATATCCA

Function

symbol description
gja8 Enables gap junction channel activity. Involved in gap junction-mediated intercellular transport. Located in plasma membrane. Is integral component of plasma membrane. Part of connexin complex. Implicated in cataract and cataract 1 multiple types.

NR:

description
PREDICTED: gap junction alpha-8 protein-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0007154 cell communication biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005922 connexin complex cellular_component
GO:0055077 gap junction hemi-channel activity molecular_function

KEGG:

id description
K07617 GJA8, CX50; gap junction alpha-8 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932036.2 True 1709 mRNA 0.46 1 9968451 9970159

Neighbor

gene id symbol gene type direction distance location
fstl1a LOC108258944,LOC108428196,LOC103028151,LOC106575075,LOC105019681 coding downstream 7081 9939296 ~ 9961370 (-)
lrrc58a LOC108258943,LOC108428195,LOC107566531 coding downstream 31278 9931449 ~ 9937173 (-)
stn1 obfc1 coding downstream 40474 9919822 ~ 9927977 (-)
sh3pxd2aa sh3pxd2a coding downstream 144743 9807172 ~ 9823708 (-)
cfap58 cfap58 coding downstream 262625 9597014 ~ 9705826 (-)
bcl9 bcl9,LOC107676875,LOC107746285 coding upstream 23542 9993701 ~ 10043255 (-)
morc3b LOC108258289 coding upstream 134373 10104532 ~ 10116972 (-)
cbr1 cbr1,LOC108428204,LOC107746284 coding upstream 150383 10120542 ~ 10123973 (-)
cryzl1 cryzl1 coding upstream 163053 10133212 ~ 10141577 (-)
LOC113537761 LOC108258610 coding upstream 247449 10217608 ~ 10236158 (-)
G373398 NA non-coding downstream 3908 9962422 ~ 9964543 (-)
G373327 NA non-coding downstream 136126 9831607 ~ 9832325 (-)
G373317 NA non-coding downstream 142758 9825461 ~ 9825693 (-)
G373303 neurl1,neurl1aa,LOC107676877,LOC107746293,LOC107746052 non-coding downstream 168541 9793369 ~ 9799910 (-)
G373316 NA non-coding downstream 175830 9792282 ~ 9792621 (-)
G373629 NA non-coding upstream 52378 10022537 ~ 10024885 (-)
G373649 NA non-coding upstream 114280 10084439 ~ 10084737 (-)
G373656 setd4 non-coding upstream 156666 10126825 ~ 10127889 (-)
G373657 setd4 non-coding upstream 158650 10128809 ~ 10129630 (-)
G373658 NA non-coding upstream 159673 10129832 ~ 10130057 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 49672 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 1357610 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 1536013 8429562 ~ 8432438 (-)
timmdc1 timmdc1 other downstream 1639425 8320868 ~ 8329026 (-)
LOC113537489 NA other downstream 1701179 8261435 ~ 8267272 (-)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 451993 10422152 ~ 10435367 (-)
lipt1 lipt1 other upstream 901065 10871224 ~ 10872556 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 2108732 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 2654892 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 3337554 13307713 ~ 13320530 (-)

Expression


Co-expression Network