grk1a (grk1,grk1a,LOC107748333)


Basic Information

Item Value
gene id grk1a
gene name grk1,grk1a,LOC107748333
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6191628 ~ 6200180 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932058.2
ATGGATATTGGTGGTCTTACAACAGTGGTAGCCAACTCGGCATACATCTCAGCTCGTGGAAGCTTCGATGGCACAGCAAACGCAGCAGCAAATCGGGACAAGAAGTACCATGCCAAGCTCAAACTGCCTCACATCACAGTATGTGAGGGCCTTAGGGAGACACTGGACCTCCAGTTTAACAGTATCTGTGTCGAACAACCCATTGGCAAGCGCCTGTTCCAGGAATACTTAGAAACAACTAATGAGTACAAGGGGCCCTGTCGCCTATGGAAGGATGTGGAGGAATATGACACGGCTGAGGACAAGGATCGTGTCAGTAAGGCTGCCAAGATCCTCCAACGCTACATGGACCCTGCAGCCAAGTACTTCTGTCCCTTTCTCCCTGAAAATGACATCACCAAGGTGAAAGAGCGGCATGCGAATGCTTCAGATGACCTGTTTGTTGACATTCTAGCCTGCGTTCTTGATTTCCTTAAGGAGGTCCCATATACCTTCTACCTGGAGACCATGTACTTCAAGAGGTTCCTGCAGTGGAAGTGGCTGGAGATGCAGCCCATTGGTGAGGACTGGTTCCTGGACTTCCGCGTGCTTGGGAAGGGGGGCTTCGGCGAGGTGTCTGCCTGCCAGATGAGGGCCACAGGAAAGATGTATGCCTGCAAGAAGTTGAATAAAAAAAGGCTTAAGAAGAGGAAAGGGAATGAGGGTGCCATGGTGGAGAAAAGGATTCTGGCTCGTGTTCATAGTAGATTCATTGTTTCCCTGGCCTACGCCTTCCAGACCAAAACGGAACTTTGTCTGGTCATGACCATCATGAATGGAGGAGACCTGAGGTACCACATTTATAATGTAGATGAGAATAATCCAGGCTTTGATGAGCCCAGGGCATGTTATTATACAGCTCAAATCATTCAAGGGTTGGAGCACCTTCATCAGAAGAGAATCATCTACAGAGACCTGAAACCAGAGAATGTTCTTCTGGACAATGAAGGTAATGTGCGTATCTCTGACCTTGGTTTGGCTGTGGAGTTAGCAGACGACCAGGAGAAGACGAAAGGCTACGCTGGGACTCCAGGATTCATGGCCCCTGAGTTGCTGAAAGGAGATGAGTATGACTACTCTGTAGATTACTTTACTCTTGGAGTCACTCTCTACGAGTTCATTGCCGCCAAAGGCCCCTTCAGGACTCGAGGAGAGAAGGTGGAGAACAAAGAGGTGAAGAAGCGCATCCTGAATGACCCAGTAACCTACACAGAGAAGTTCAGTGAGAATGCGAAGTCCATATGTGAAGCCTTGCTAGCTAAGGAAGTGGACAAGAGGATGGGCTTCAAGAATAGGACTTGTGATGAGCTGCGTGCGCACCCTTTCTTCAGCAGCATCAACTGGAGGAAGCTGGATGCAGGAATTCTGCCACCTCCGTTTGTCCCTGATTCTAAGACCGTGTATGCCAAGGACCTTGATGATGTGGGAGCATTCTCCACTGTGAAAGGAGTCAACCTGGAAGATTCGGATAAGGAGTTTTTCGATGAGTTTGCCTCTGGAAATATCTCCATACCTTGGCAGGAGGAGATGATTGAGACAGGAATCTTTGGCGAGCTGAATGTGTGGGGTCCTGGAGGCACAGTGCCCAACGATCTACGGCGTGAGTCTCTCCTGGAGCAGCCAAAGTCTTCCACATGTACCATATCATAAATGCTTCTATATAAAGAGAACTCTTTCCCCTTTCCTTAATGTTCTCTGATTGGGTTGATGCCTGGACATAAAGAGATTCAGGAATGACCAGAAGGATAAAGTTATTTCATGTTGTCATGTTTTTATCAACAAAAATGGACTGCAGAACAGCTTTTAACAAGCATTAACATGTTAATACAAGCTTTGAacagatgaaagaaaagaattgGTGGTGCATTGATGAGTAACACTtattccacagcgctgttgaattttcGATTCTGTTGGGTCACGACGGTGTTAATTActtttctgacagtagtgccagctctAAGGCAAAACACAGGTTCTATTTCACCCCCACCAGGGGCAGTGTCTAACACCTGAATATCCTCTAGTGTACATGTGCACATGTACTGAGACCTTCAACAAGTGATGTAGTGTTTGCTGGTTCTACACAAAGTATTTTCTTGTTCAGAAAACGAAGGCAGCACCCGTCCTATTCTAGGCCAGCTTGGTTCCTGAAAGTCCTCTCCTTTTGCATGCTAGCATAGTCAAATGTTGTTCATTCCATGTAGCCAAAAGACAGGTCAGTAGATCTTGCATCACAGCATGTCTCAGACATCACAACGCTTGCCAGCAGTATGCAAGTGGGTTGCTCCTGTACACGCGAACCCAGTTTCTATTGAGGATGCTGGACTTGTTGACTGCAGTCATATCAGTGGTTCCCTTGGGCCTGCTGGGACTGAGGGGCTACTTGAGATCAGGGGCATGTGGCCAAATCCTAGGCTCAATCAACAAAGATGCAGTCTCATCTCAATGAAAGTGGTACAGACCCATAAAGAGATGGTCACCATCACCAAggatgcctccttcactggattGGGAGCAGTGTGGTATCACAGGAGGCATGCCGACCCTCAGTGTGAAGTCAGAACACAGTAACCTGCTGACTCTTGCGTTCTGTCTAACTGTTCTGTGACACTTTCCATTTGGGCAATTCAGCAATGGTGAGGCGCATAAATCACCACCGAtgcacaagttaaaaaaaaatttgctctCCACGTTATATGGAAGCTCTTCCAGTGGGCTCAATGATGGCTAGCCTCACTGACATGTGAGTACAATGGGGCAGCAGACATGCTGTTCAGGCAGCACAGAGTCGTGCTAGCATTCAGAGGTGGTGCAACAGGTCTGGGAAAATTTTGGCCAGTGAAAGGTGGACCCTTTTCCTGGTGTCTTGTTGGCTCATTTTCCTCAGCAGAGTGGGAAGGTCCTCAGGGACAAGATGCACATTCCTACCTCCCTTGCTGATTCTGCCCATGCTACATGACCAGTGAAACTCTGCTTCTCACTGCTGCTTATTCTAGTGGTTGGGACACCCTGGCAACTCCCTCCTCAGGCAGACTTGTTGTCTCAGATGAATGGGGAACTGTTCCAAAAATGCTGTGTGCCCTGTTGATTGCTGCCCAATGCCCAATGCTCAAAGTCAGCCATAGGTGAGTCAGTTCCTCACTACGTTGTCGCAGAGGGTATCCAGATGTTAGACACTGTGTCTGGCAGTCAGAAGGGGTGAAATTCGATTCTATGGTCACCCAGTAGGCCCTCGGTGAGTAGGTTCCAGGAAGAGAAGTGGTGTggtatgaatgtgtttatagcAAATACTACGTCACTGTCActagtgtttatattaatgcacctacttataaaaattattgtttctatagtaacacctcattCACAGTTACTTGCATGGCAGACACACAACATAATccaatactaataataaacaaacaaatccctgtgttgttatttaacaaggaaaaacatataattgttgatctgTCAGTTTCACCcgatgggaaagtcttcaggagagagggcTCTGTCAAGATCTTTGAcaagatctgttttttttttttttttttttgtcttattcatttaaagagagagaaaaaaaggcttgtgagggaataactgtttatagctgctctaatatagtgataacaggaattaacttgtctcacaacaagttaaatgtaactataaacggtttAAAGAACTGACATGTCATtggttaataaatttaaaattgtaatccttggcaaattgctgtggtacaagaggaataaaacactttgcgatgtgctgttatatgatgTTATACGGTGTGATATGGAAGCGGAGATAACGCATCGCCGAAGtggattgattattttcccataacagcgcACCCTGTCATGTTCAGCTAGCTTGATTTCCATCATTCAAAGGTACCACAGTTAggagtttaaagggttaaagggTTAATGTACTGTACTAATGGACTGTCATTACACTGCTGTATTTTCTATGTTTATTATGACtatcctaatttgcatattgcatcAAAGCTGAGAAGGATATGAAGGTTACTTTATCAGCCTTAGTGAATTAATTTCCTCTCTTGTAAGAATTCACTATACAGATATCTAAGGGTATTGTAGGGCTATTTAATCCAGCAGAAAACTGTCATGTATGACGTTTTGGATAATGAGGATAAAAAAAGAGGTGCTGATGACTAATTACACAGGAAATGCTTGTGCTTTTCATAGTGTTTTATTATGGTTTGCTGAGTGCTCCTGCCCAGATAAGCTTATTTCAGCCCACTTAGATCATCCTTTTGTGTAAAAA

Function

symbol description
grk1a Enables rhodopsin kinase activity. Predicted to be involved in protein phosphorylation and regulation of signal transduction. Predicted to act upstream of or within several processes, including phosphorylation; regulation of rhodopsin mediated signaling pathway; and visual perception. Predicted to be active in cytoplasm. Is expressed in epiphysis; eye; retinal photoreceptor layer; and retinal rod cell. Human ortholog(s) of this gene implicated in Oguchi disease-2 and night blindness. Orthologous to human GRK1 (G protein-coupled receptor kinase 1).
grk1 Enables rhodopsin kinase activity. Involved in protein autophosphorylation and regulation of rhodopsin mediated signaling pathway. Predicted to be located in photoreceptor outer segment. Predicted to be active in cytoplasm. Implicated in Oguchi disease-2 and night blindness.

NR:

description
rhodopsin kinase

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0050254 rhodopsin kinase activity molecular_function
GO:0004703 G protein-coupled receptor kinase activity molecular_function

KEGG:

id description
K00909 GRK1_7; rhodopsin kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932058.2 True 4341 mRNA 0.45 7 6191628 6200180

Neighbor

gene id symbol gene type direction distance location
cenpe cenpe,LOC107751066,LOC107573438 coding downstream 1234 6162114 ~ 6190394 (-)
LOC113537602 tmem255b coding downstream 30666 6136507 ~ 6160962 (-)
blzf1 blzf1 coding downstream 207831 5976377 ~ 5983797 (-)
txnl4b txnl4b coding downstream 218189 5971040 ~ 5973439 (-)
mrpl16 mrpl16 coding downstream 222563 5963752 ~ 5969065 (-)
tfdp1b tfdp1 coding upstream 3517 6203697 ~ 6222555 (-)
tmco3 tmco3 coding upstream 25873 6226053 ~ 6238578 (-)
lamp1a NA coding upstream 79644 6279824 ~ 6292747 (-)
cul4a cul4a,LOC102780633 coding upstream 95200 6295380 ~ 6317459 (-)
LOC117596162 LOC108258591 coding upstream 126597 6326777 ~ 6330275 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 186838 6001838 ~ 6004790 (-)
G371135 NA non-coding downstream 190015 6001179 ~ 6001613 (-)
G371153 NA non-coding downstream 192154 5998848 ~ 5999474 (-)
G371152 NA non-coding downstream 193469 5998003 ~ 5998159 (-)
G371147 ercc5 non-coding downstream 196881 5993489 ~ 5994747 (-)
G371454 NA non-coding upstream 329217 6529397 ~ 6536004 (-)
G371487 NA non-coding upstream 363669 6563849 ~ 6566945 (-)
G371595 NA non-coding upstream 608313 6808493 ~ 6815071 (-)
G371632 NA non-coding upstream 667564 6867744 ~ 6867960 (-)
G371625 NA non-coding upstream 679690 6879870 ~ 6881780 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 158235 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 239315 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 644596 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 796616 5388904 ~ 5395012 (-)
G370658 NA other downstream 1302247 4843329 ~ 4889381 (-)
LOC113537742 LOC108258591 other upstream 158459 6358639 ~ 6363203 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 670386 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 858655 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 1157091 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 1518083 7718263 ~ 7724795 (-)

Expression


Co-expression Network