LOC113537540 (LOC108258592,LOC108429813,LOC107739159,LOC107739162,LOC107751098,LOC107694465,LOC107570071)


Basic Information

Item Value
gene id LOC113537540
gene name LOC108258592,LOC108429813,LOC107739159,LOC107739162,LOC107751098,LOC107694465,LOC107570071
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6403262 ~ 6404088 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932059.2
ATTGTGCCTGTTATCCTATTGGTTATTGTGCTGTAGACCAGGTGAAGCTTGTCACACACTTGCTATATAAGCAGTTCAACTCTAGTCACTCTGCTGATACACTTTTGGTCCTTTGTAGTATTATAACAATCTAAGCATCATGTCTGGTCGTGGGAAGAAAGTTGTGGCAGCTGCTAAGACTAAGTCCTCCGTGTCCCGCTCTACACGCGCTGGGCTTCAGTTTCCAGTTGGCCGTATTGCGCGCCTCCTGAGGAAAGGCAACTATGCACAGCGGATTGGCTCTGGGGCTGCTGTTTACCTCACTGCGGTACTGGAGTATCTGTGTGCGGAGGTGCTGGAACTGGCTGGAAATGCCAGCAGAGACAACAAGAAGCTGCGCATTGCTCCCCGCCACATTCAGCTGGCTGTGAGGAACGATGAGGAGCTGAACACACTGCTGGGTGgagtcactatcagtgaaggaggagtgctGCCCAACATTCAGGCCCAACTCCTGCCCAAGAAGACCAAGGCACCCCGAGAGGCCAACAACAGCAAGGACATTCAATCCCAGGAGTTTTAAACCTCTCATATGTGCACTtgtgtaattttaatatttttagtcAATAAACTTGTATTAATTTA

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11251 H2A; histone H2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932059.2 True 624 mRNA 0.49 2 6403262 6404088

Neighbor

gene id symbol gene type direction distance location
f7l LOC108258590 coding downstream 10796 6384899 ~ 6392466 (-)
f7 LOC108258589,LOC108429788 coding downstream 18463 6380329 ~ 6384799 (-)
LOC113537543 LOC108258588 coding downstream 23087 6363812 ~ 6380175 (-)
f7i fa7 coding downstream 24268 6372375 ~ 6378994 (-)
LOC117596162 LOC108258591 coding downstream 72987 6326777 ~ 6330275 (-)
LOC113537523 pou2f1 coding upstream 27921 6432009 ~ 6449919 (-)
dusp27 dusp27,LOC102309085 coding upstream 47487 6451575 ~ 6461551 (-)
LOC113537739 LOC108258596 coding upstream 64429 6468517 ~ 6500613 (-)
LOC113537384 prss23,LOC107570079,LOC106575973 coding upstream 202512 6606600 ~ 6610907 (-)
LOC113537292 ccdc81 coding upstream 236976 6641064 ~ 6660087 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 398472 6001838 ~ 6004790 (-)
G371135 NA non-coding downstream 401649 6001179 ~ 6001613 (-)
G371153 NA non-coding downstream 403788 5998848 ~ 5999474 (-)
G371152 NA non-coding downstream 405103 5998003 ~ 5998159 (-)
G371147 ercc5 non-coding downstream 408515 5993489 ~ 5994747 (-)
G371454 NA non-coding upstream 125309 6529397 ~ 6536004 (-)
G371487 NA non-coding upstream 159761 6563849 ~ 6566945 (-)
G371595 NA non-coding upstream 404405 6808493 ~ 6815071 (-)
G371632 NA non-coding upstream 463656 6867744 ~ 6867960 (-)
G371625 NA non-coding upstream 475782 6879870 ~ 6881780 (-)
LOC113537742 LOC108258591 other downstream 40059 6358639 ~ 6363203 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 369869 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 450949 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 856230 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 1008250 5388904 ~ 5395012 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 466478 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 654747 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 953183 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 1314175 7718263 ~ 7724795 (-)
fam155a LOC108258331 other upstream 1508122 7912210 ~ 7993096 (-)

Expression


Co-expression Network