LOC113537541 (c26hxorf38)


Basic Information

Item Value
gene id LOC113537541
gene name c26hxorf38
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7084926 ~ 7090530 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932060.2
GGAAAACCTTTGTTGAGatatttttttgaaagtgtTCGTATAGGGACggttttttcctcattcagGCATGGTTCATGAAGATTTATTTGCACGTCTTAACGAAGCTGGATATAAAAACTGGCTAAAAGCAGGTTACTGCCTCCTGAAAGTTAAAGATGGATTGTGTGGATTTGCGGACAGTGAAATGCGGTATTTTCACAACACAGTCATCAATAACAACTTCGTCTTACAAAGAGGACAGAGGTGCAGGAGCAGCTGTAGACCGAGGGGAAATCAGTTTGAGTCTGCTTGTCCTGTCTGTAATGAGTGGAAGAGGGAAATATTGAGACACCACACAAAACCATCTGGTGTTATTAACTGGGGAAACTGCAGGCCCTGGCTGTGGCCTACTGAACACTGGGAGCTGGCAAAGGCATTCATGCCACGAGGGCTGTCAGATTTATCCAAAGCAGACCAGTGTGATGCAGCAGCCCTGCTTAACCTCTTCCACTTCTGTGACCATTTCAGCTTCATCAACCCGACTCTCATAACAGAGGTCATACGCTGTAGGAATGAGTTAATGCACTCGTGTGAGATGCAGGTCTCAAATGAGTGGATGACACGCTTTCAGAAGAGCCTGGAGCACTTGTTACTAACTCTACGCCACGTCCCTGAAGTGGCTGCAGCAGGTCAACAGATCCAGGAGatgttGTCCGTTGATCTGTCATTGCACATCCCTGGGGTGGACAGTGTGGATGGAGCCAAAATGGAAGGAGTATTCATTGAATCGATCAGCCAGTGTGAGACGGAATTGCTTCGGGAAACTCTGAGAGACCTGTTAAACAACAGTGAACTTGAGGGGAATATCATACCTCTGGAGAAACTACAGAACATCTATAGATTCCTGAGCGGCCACAAGGATCTTGAAGAGCAGTTCAGGACAGAACTTCAGAGACTTCAGGTCCTGGAGGCACAACTGCAAGGAGCGAACGCTGACAATGCGGAAAGATGACTGCTACAGAAATGACAGAAGGAAAAGGATAGTCCTTGTTGCAGGAGTCAAtacatgtaaatggaaaaatcCATTTTGGTTCTTATCGTATATTGCAGGAATATTAGCAGTCAGGTCATTAATTCAGGTTTTTCACAACTGGACATTCCATGTATTTTGCAATGGTACACATTACCACACATGACTTGGAGGTTCTATTCATAAGGTACGATTCATAGATTTCAGTAGTATGCAGTTGTGTGCAAATCACAGCCAATAAAttgttataaagtgtttttttgaTCTAGGACATTTGTTAGAATGGGAGGGGGGTCAGCATTATATGAATGTTTACACATGCCTCATGTTTACATAAGCCCTGATGcaatacaaaaaagaaagaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932060.2 True 1376 mRNA 0.44 6 7084926 7090530

Neighbor

gene id symbol gene type direction distance location
si:ch211-91p5.3 NA coding downstream 2072 7069178 ~ 7082854 (-)
LOC113537750 fgf14,LOC108258297,LOC108434733,LOC105911936 coding downstream 59920 6958020 ~ 7025006 (-)
arhgap20 LOC108259036 coding downstream 222823 6835427 ~ 6862103 (-)
mxh si:dkeyp-110c12.3,LOC108258858,LOC108434714 coding downstream 288787 6791160 ~ 6796139 (-)
LOC117595692 LOC108258862,LOC108258860,LOC108258859,LOC108258861,LOC108429797,LOC108261765 coding downstream 305636 6772355 ~ 6779290 (-)
pcdh8 LOC108258318 coding upstream 2272 7092802 ~ 7096706 (-)
sugt1 sugt1,LOC104941757 coding upstream 66050 7156580 ~ 7181482 (-)
LOC113537349 LOC108258693 coding upstream 94272 7184802 ~ 7201325 (-)
ednrba ednrb,LOC108258323,LOC108434743,LOC107658690,LOC107566659,LOC105911940,LOC106600156,LOC105022329 coding upstream 127835 7218365 ~ 7226649 (-)
mid1 mid1,LOC103030906,LOC106575281,LOC106574413 coding upstream 163221 7253751 ~ 7302564 (-)
G371634 NA non-coding downstream 183583 6891766 ~ 6901343 (-)
G371625 NA non-coding downstream 203146 6879870 ~ 6881780 (-)
G371632 NA non-coding downstream 216966 6867744 ~ 6867960 (-)
G371595 NA non-coding downstream 269855 6808493 ~ 6815071 (-)
G371487 NA non-coding downstream 517981 6563849 ~ 6566945 (-)
G371787 NA non-coding upstream 60908 7151438 ~ 7153159 (-)
G371793 NA non-coding upstream 92646 7183176 ~ 7183386 (-)
G371929 NA non-coding upstream 320451 7410981 ~ 7415018 (-)
G371964 NA non-coding upstream 377259 7467789 ~ 7468460 (-)
G371967 NA non-coding upstream 385373 7475903 ~ 7476105 (-)
LOC113537271 LOC108258282 other downstream 16395 7058835 ~ 7068531 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other downstream 174380 6870566 ~ 6910546 (-)
LOC113537742 LOC108258591 other downstream 721723 6358639 ~ 6363203 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 1051533 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 1132613 5942039 ~ 5952313 (-)
LOC113537388 arhgap6 other upstream 266741 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 627733 7718263 ~ 7724795 (-)
fam155a LOC108258331 other upstream 821680 7912210 ~ 7993096 (-)
cars2 cars2 other upstream 978872 8069402 ~ 8084539 (-)
LOC113537489 NA other upstream 1170905 8261435 ~ 8267272 (-)

Expression


Co-expression Network