Gene
RNA
| Item | Value |
|---|---|
| gene id | txnl4b |
| gene name | txnl4b |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 5971040 ~ 5973439 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| txnl4b | Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex; U5 snRNP; and spliceosomal complex. Orthologous to human TXNL4B (thioredoxin like 4B). |
| description |
|---|
| thioredoxin-like protein 4B |
| id | name | namespace |
|---|---|---|
| GO:0005681 | spliceosomal complex | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_026932062.2 | True | 1074 | mRNA | 0.42 | 3 | 5971040 | 5973439 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| mrpl16 | mrpl16 | coding | downstream | 1975 | 5963752 ~ 5969065 (-) |
| mrpl39 | mrpl39 | coding | downstream | 50841 | 5913959 ~ 5920199 (-) |
| jam2a | jam2 | coding | downstream | 62173 | 5896336 ~ 5908867 (-) |
| n6amt1 | n6amt1,LOC107563652 | coding | downstream | 374945 | 5589772 ~ 5596095 (-) |
| wu:fa56d06 | LOC108258903 | coding | downstream | 413950 | 5549553 ~ 5557090 (-) |
| blzf1 | blzf1 | coding | upstream | 2938 | 5976377 ~ 5983797 (-) |
| LOC113537602 | tmem255b | coding | upstream | 163068 | 6136507 ~ 6160962 (-) |
| cenpe | cenpe,LOC107751066,LOC107573438 | coding | upstream | 188675 | 6162114 ~ 6190394 (-) |
| grk1a | grk1,grk1a,LOC107748333 | coding | upstream | 218189 | 6191628 ~ 6200180 (-) |
| tfdp1b | tfdp1 | coding | upstream | 230258 | 6203697 ~ 6222555 (-) |
| G371121 | NA | non-coding | downstream | 75352 | 5892326 ~ 5895688 (-) |
| LOC117596178 | NA | non-coding | downstream | 79243 | 5886846 ~ 5891797 (-) |
| G371117 | NA | non-coding | downstream | 85428 | 5880476 ~ 5885612 (-) |
| LOC117596170 | NA | non-coding | downstream | 452660 | 5510716 ~ 5518380 (-) |
| G370942 | NA | non-coding | downstream | 462671 | 5508102 ~ 5508369 (-) |
| G371147 | ercc5 | non-coding | upstream | 20050 | 5993489 ~ 5994747 (-) |
| G371152 | NA | non-coding | upstream | 24564 | 5998003 ~ 5998159 (-) |
| G371153 | NA | non-coding | upstream | 25409 | 5998848 ~ 5999474 (-) |
| G371135 | NA | non-coding | upstream | 27740 | 6001179 ~ 6001613 (-) |
| G371134 | mettl21c,LOC108429839 | non-coding | upstream | 28399 | 6001838 ~ 6004790 (-) |
| LOC113537623 | NA | other | downstream | 18727 | 5942039 ~ 5952313 (-) |
| LOC113537235 | son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 | other | downstream | 424008 | 5529992 ~ 5547032 (-) |
| LOC113537294 | NA | other | downstream | 576028 | 5388904 ~ 5395012 (-) |
| G370658 | NA | other | downstream | 1081659 | 4843329 ~ 4889381 (-) |
| LOC117596167 | NA | other | downstream | 3117829 | 2843212 ~ 2853211 (-) |
| tpp2 | tpp2,si:ch73-244f7.4,LOC107665822 | other | upstream | 42287 | 6015726 ~ 6033393 (-) |
| LOC113537742 | LOC108258591 | other | upstream | 385200 | 6358639 ~ 6363203 (-) |
| pspc1 | pspc1,LOC108258933,LOC108434730 | other | upstream | 897127 | 6870566 ~ 6910546 (-) |
| LOC113537271 | LOC108258282 | other | upstream | 1085396 | 7058835 ~ 7068531 (-) |
| LOC113537388 | arhgap6 | other | upstream | 1383832 | 7357271 ~ 7478509 (-) |
