LOC113537543 (LOC108258588)


Basic Information

Item Value
gene id LOC113537543
gene name LOC108258588
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6363812 ~ 6380175 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932063.2
AAAGCATTCAGGTTCACTCTTTCTCAACAAACTCATAGTTCAGTTTGACACCAGAAGTGTTCTAAATTTTAAAGCTAAATGTCAAGTAGTAACATTTTTAATAGCATTAATAGGTTATGCATAATAagAATTCAGTACTCTCTTATAGAGAAGTGCCTTACGATAAAAACTCGGCATGTTTTGGGTCTTCAGGACCTTTCTTTGTCTACTTCTTGCACACTGTGTCACTCCTGAGGTGTTCCTTCACACCAAGGATGCCAACCAGGTCCTCACACGCCACAGGCGAGCCAACAGCATATTTGAGGAACTAAAAAAGGGTGACATGGAGCGCGAGTGCATGGAAGAACGGTGCAGTTACGAGGAGGCCCGAGAGATCTTTGAGGATGAAAAAAAGACGAATGAGTTCTGGAACATATACAAAGATGGAGATGCCTGCATATCTCAGCCTTGTCTCAACAAGGGTGTGTGTAAAGATGGACTAGGCCGATATACCTGTTACTGCCCTGAATTGTTTCAGGGGTATAACTGTGAGATTGCAATACCACAACTGTGTGAGGTTAATAACGGTGGTTGCGAGCACTTCTGCAAAGTGGACCAGAAGATGGGAACTGCAATCTGCTCTTGTGCCAAAGGTTACAAACTAGCAGCCGACAAGAAGACTTGTACATCTGATGatCCCTTCAAATGTGGCTATGTGTTTCCTAAGACAACCCGAAGCATTTTAATACATCATCCAATAGAAAATGTCACTGGCAATGGCACTAGCCCTACGGCTGTGCCAGTGGGTACAAATGAAGGACATATAGTGAccttcactgaaaaaaatgctgtCACAAATTACACTCAGAGCCAAGCAGATACCAACAGTTTGTTTGGACTGATAGAACCCAGTCCCACTGTCAGGGAGGAACCAGTGCTTCCAAATTCTTATGGAGACACAAGGATTGTGAACGGCGAGGATTGTCCTCCTGGAGAATGTCCTTGGCAGGCGCTGCTTATGAATGAGGACAAGATGGGCTTCTGTGGAGGGACCATTCTAAACGAATACTTCATTTTGTCTGCAGCTCACTGCATGAACCTGTCTCGCTCCATCACAGTTATTCtagGTGAAACAGACACATTGGTTAGGGAAGGACGAGAAGCGGTGCATGCCGTTGAACAGGTACTGGTGCATACGAACTATCAGCCCGAGACCTACCACAATGACATTGCCCTCATCAAGCTTGTGAAGCCCATTACCTTCACCAAGTACATCCTCCCAGCATGCCTCCCCGAACGTGACTTTGCAGAACGTGTGCTCATGCAAGAAGAACACGCCATGGTGAGTGGATTTGGTCGTCTCCAAGAGGGTGGTCTACAGGCCACTATCCTGCAAAGGCTCACTGTGCCCTATATAGACCGTTCCATCTGCAAGGAGTCCACCAAGTTCAACATCAGCCCCCGCATGTTCTGTGCAGGCTATGGCAGGGAGGAAAAGGATGCGTGTCAGGGTGACAGTGGTGGCCCACATGTCACCAGATACAAAAACACATGGTTCGTGACGGGTGTGGTAAGCTGGGGTGAGGGCTGTGCTCGCAAAGACAAGTATGGCGTCTACACGCAGGTGTCCAAGTACCTCAAGTGGATTGAGACCGTCATGGAAAAGGTCATGGACGAGACTAAAACCAACAAGAAATCCAGGAACAAGAGGTGGGCACCTGGGCACATGCAAGTGATTCGGATGTGAATGAAGATCaattatgataaattatgtaTAAGAGAgatgtaaaatgaaaacaacTACAACTGGAAATAAACCACATTAGAATAAAGGTTCCATATATTGGTCAAATCA
>XM_026932064.2
CTATAAGTGAACAAACACATATTTCTAATTTGCTCACTGTAAAACATACCAAGCTGTACTCTTCAACACCATACAGTTTGTTCCCCTGACTGCCTCACACAGAATTCAGTACTCTCTTATAGAGAAGTGCCTTACGATAAAAACTCGGCATGTTTTGGGTCTTCAGGACCTTTCTTTGTCTACTTCTTGCACACTGTGTCACTCCTGAGGTGTTCCTTCACACCAAGGATGCCAACCAGGTCCTCACACGCCACAGGCGAGCCAACAGCATATTTGAGGAACTAAAAAAGGGTGACATGGAGCGCGAGTGCATGGAAGAACGGTGCAGTTACGAGGAGGCCCGAGAGATCTTTGAGGATGAAAAAAAGACGAATGAGTTCTGGAACATATACAAAGATGGAGATGCCTGCATATCTCAGCCTTGTCTCAACAAGGGTGTGTGTAAAGATGGACTAGGCCGATATACCTGTTACTGCCCTGAATTGTTTCAGGGGTATAACTGTGAGATTGCAATACCACAACTGTGTGAGGTTAATAACGGTGGTTGCGAGCACTTCTGCAAAGTGGACCAGAAGATGGGAACTGCAATCTGCTCTTGTGCCAAAGGTTACAAACTAGCAGCCGACAAGAAGACTTGTACATCTGATGatCCCTTCAAATGTGGCTATGTGTTTCCTAAGACAACCCGAAGCATTTTAATACATCATCCAATAGAAAATGTCACTGGCAATGGCACTAGCCCTACGGCTGTGCCAGTGGGTACAAATGAAGGACATATAGTGAccttcactgaaaaaaatgctgtCACAAATTACACTCAGAGCCAAGCAGATACCAACAGTTTGTTTGGACTGATAGAACCCAGTCCCACTGTCAGGGAGGAACCAGTGCTTCCAAATTCTTATGGAGACACAAGGATTGTGAACGGCGAGGATTGTCCTCCTGGAGAATGTCCTTGGCAGGCGCTGCTTATGAATGAGGACAAGATGGGCTTCTGTGGAGGGACCATTCTAAACGAATACTTCATTTTGTCTGCAGCTCACTGCATGAACCTGTCTCGCTCCATCACAGTTATTCtagGTGAAACAGACACATTGGTTAGGGAAGGACGAGAAGCGGTGCATGCCGTTGAACAGGTACTGGTGCATACGAACTATCAGCCCGAGACCTACCACAATGACATTGCCCTCATCAAGCTTGTGAAGCCCATTACCTTCACCAAGTACATCCTCCCAGCATGCCTCCCCGAACGTGACTTTGCAGAACGTGTGCTCATGCAAGAAGAACACGCCATGGTGAGTGGATTTGGTCGTCTCCAAGAGGGTGGTCTACAGGCCACTATCCTGCAAAGGCTCACTGTGCCCTATATAGACCGTTCCATCTGCAAGGAGTCCACCAAGTTCAACATCAGCCCCCGCATGTTCTGTGCAGGCTATGGCAGGGAGGAAAAGGATGCGTGTCAGGGTGACAGTGGTGGCCCACATGTCACCAGATACAAAAACACATGGTTCGTGACGGGTGTGGTAAGCTGGGGTGAGGGCTGTGCTCGCAAAGACAAGTATGGCGTCTACACGCAGGTGTCCAAGTACCTCAAGTGGATTGAGACCGTCATGGAAAAGGTCATGGACGAGACTAAAACCAACAAGAAATCCAGGAACAAGAGGTGGGCACCTGGGCACATGCAAGTGATTCGGATGTGAATGAAGATCaattatgataaattatgtaTAAGAGAgatgtaaaatgaaaacaacTACAACTGGAAATAAACCACATTAGAATAAAGGTTCCATATATTGGTCAAATCA

Function

GO:

id name namespace
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K01314 F10; coagulation factor X

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932063.2 True 1834 mRNA 0.46 9 6363812 6368888
XM_026932064.2 False 1808 mRNA 0.47 9 6363812 6380175

Neighbor

gene id symbol gene type direction distance location
LOC117596162 LOC108258591 coding downstream 33537 6326777 ~ 6330275 (-)
cul4a cul4a,LOC102780633 coding downstream 46353 6295380 ~ 6317459 (-)
lamp1a NA coding downstream 71065 6279824 ~ 6292747 (-)
tmco3 tmco3 coding downstream 125234 6226053 ~ 6238578 (-)
tfdp1b tfdp1 coding downstream 141257 6203697 ~ 6222555 (-)
f7 LOC108258589,LOC108429788 coding upstream 154 6380329 ~ 6384799 (-)
f7l LOC108258590 coding upstream 4724 6384899 ~ 6392466 (-)
LOC113537540 LOC108258592,LOC108429813,LOC107739159,LOC107739162,LOC107751098,LOC107694465,LOC107570071 coding upstream 23087 6403262 ~ 6404088 (-)
LOC113537523 pou2f1 coding upstream 51834 6432009 ~ 6449919 (-)
dusp27 dusp27,LOC102309085 coding upstream 71400 6451575 ~ 6461551 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 359022 6001838 ~ 6004790 (-)
G371135 NA non-coding downstream 362199 6001179 ~ 6001613 (-)
G371153 NA non-coding downstream 364338 5998848 ~ 5999474 (-)
G371152 NA non-coding downstream 365653 5998003 ~ 5998159 (-)
G371147 ercc5 non-coding downstream 369065 5993489 ~ 5994747 (-)
G371454 NA non-coding upstream 149222 6529397 ~ 6536004 (-)
G371487 NA non-coding upstream 183674 6563849 ~ 6566945 (-)
G371595 NA non-coding upstream 428318 6808493 ~ 6815071 (-)
G371632 NA non-coding upstream 487569 6867744 ~ 6867960 (-)
G371625 NA non-coding upstream 499695 6879870 ~ 6881780 (-)
LOC113537742 LOC108258591 other downstream 609 6358639 ~ 6363203 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 330419 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 411499 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 816780 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 968800 5388904 ~ 5395012 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 490391 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 678660 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 977096 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 1338088 7718263 ~ 7724795 (-)
fam155a LOC108258331 other upstream 1532035 7912210 ~ 7993096 (-)

Expression


Co-expression Network