rab3da (rab3da,LOC108258507,LOC108435977,LOC103040938,LOC107757002,LOC107747429,LOC107675349,LOC107569532)


Basic Information

Item Value
gene id rab3da
gene name rab3da,LOC108258507,LOC108435977,LOC103040938,LOC107757002,LOC107747429,LOC107675349,LOC107569532
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11448379 ~ 11464622 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932090.2
GCCATCACTGGGCGTCAGTAGAGGGTGGAAGGATAAACTGTGTCAAGGTAAAGGCGAATAAAGACATCGATCTGAGAAGTTAGCTTTGTTTTATTAGTggggtttattttattattaaaaaagagCCGTGTTTAATGGAGTTGCAGTAAAAAGGACTGATAGCAGAAAGAGCGCCGGAGCAGAAGAAGCGGATATCCTAAGAGACGGATAAtaagggaggaggaggaggataataataataacttttctTTGGAGCAGAGTGAACTGAGAGCGACTGTACAAGATGGCGTCAGTAAGTGACCCCCGGCAGCAGACACAGGTGCAGAAAGATGCAGCTGACCAGAACTTCGACTACATGTTTAAATTACTTATCATTGGTAACAGCAGCGTAGGAAAGACCAGCTTCCTATTCCGCTACGCAGATGACTCGTTCACCTCGGCGTTCGTCAGCACCGTTGGCATTGACTTCAAAGTCAAAACTGTGTACCGCAATGAGAAACGCATCAAACTCCAGATCTGGGACACTGCAGGTCAGGAGAGATATCGCACCATCACCACGGCCTACTACAGAGGCGCCATGGGCTTCCTGCTCATGTACGACATCACCAACCAGGAGTCTTTCTATGCTGTACAGGACTGGGCAACTCAGATTAAGACATACTCATGGGACAATGCTCAAGTTATTCTGGTTGGAAATAAGTGCGACCTGGAGGACGATAGACTGGTGGCCACGGAAGATGGACAGAGACTAGCTAATGAGTTAGGGTTCCAGTTCTTTGAGGCTAGCGCAAAAGACAACATCAATGTAAAGCAGGTTTTCGAGCGGCTTGTTGACATCATCTGTGACAAGATGAACGAGAGCATGGATGGACAGCCAAGCCCGCTGGCCAATCACAAAGGACCCAGCCTAGAGGACACGCCCCCTACCAGCCAAAATGGCTGCTCATGTTAATGATTGCTCTGttgctctctcgctctttcaaacacacacacatacacgcacacacacaaacgcacattTACGAAATGCACACATGCCTAGCCCAACACAGCCACACTCTACTGATAGACCAAGTAGTAGTAATGCAACAAAGTGTACAATGTAAGTGTATAGtacatgtgtatacacacacatagctgTACACTACAAAAACTGGTATTGACCTGTCACAGTGGTTCTCAACTGGACTTACCTCATGTCCaatatttgtctttttcattAAGTCCTGGGCCAAATGCAACCGTTCAAgccttttaatttctttcacaCAGTGAATACTGCAGTAAAAGGCTGCACCCCTCATGCACtaaaacaggaaacaaactgaaatataaCAAAGTCTAAAAAGCTACATAAACATATAAGATTTAAATATGATCCACAAAGACCAAAACACTGCATTAGTAAAGACtaaagatataataataatatcctaaTGTTCCTATACTACTAcgactactgctactactacaactactactcctactcctactactactactactactactactaataataataatataatcatcaGGTTTTATTAAGCTGTCATTACTATGCATATggagtcataataataatttttgtccTGATAGAATACCTGGGCATTCTCTTTGTTCCTGACATGTAAGCTTAAAGCTAAACAGGACTTAAGCTAAGAAGGCTtcatacttttattttcttattttaaaggTTCAGTCAATGATTTTGGGAGAAATTAGCAAAACTAGGTTTTTGAATTCAAAAGCCACATCCCCTAAGCTAGAACACCTGTAGGCTTTCTAAATTGCCAGGCTACATGACTGACAAGAAAGCTGTCCTGATTAGTTAAATCTTAATGGCCCACATgatttccttctctcttttttatagTCTGGGTGTCCCACAGAGACCTGACTTTCTCCTTCTCAGTATATTCTGAGATATTTTAAATAGAATTCTGACAAAATTCCCAAAATGTTTTCTCTCATTattgtgtcatatttttgtttggAAGCCATGTTGTGAAAAGCTACCAAACTGCTGTGTGCATTTACTGCTATAAGTGTGCTTTTTTATTCCGCTAAATAAACTGTTATTATAGACCTGAGATGAATTTATATCACATCTCGGGTTTAAGatttaaacagaaaacactGGATGTCTTTGAAATTTAAGTAGCACATGTCTGCTTGCAACCCACCAGCTGAGAACCACTGAGCCAACAGAGATCAATTAGTCCCATAATCATACACAATCATACTTCATACATCCATGCAGAGTGTTACACAATGGCAGCATGGCTGTTTTAAGGCTATAGCATCTCAAAAGTAGCAGGGAATTGAAGGTCATGTTCAGATTTCAAAACCAAAGATTCATGTGAATGTATTTTACACCTTGCTGATGTCATGTCAATGGCACAGTGACTGAATGTAGGAAgtgaatgagattttttttccccccaaagtTGTTAGATTTTGCTTTTATCAAATTAGGCCACTGGATCAGATTTTACTTATTGTGATCAGATACAGAATGTCCAGGAAATTTCAGCTTTCTGACATTTCAAAGACTATATTTTAAAGCCGTCCTGCCTCCTTGTGGACACTGAATGTAACCGCTGTGCAGCTCTGTATCAGAGTCCTGAGCTCTATGATCTCAAATCTAGGAGGCTGAAACACACCATGGTTTAATGTTGTTTTGCTCAAGCTCATCTTATTCATGTTATGCTacttattaattaaatgaagaATGAAATTAGGGTATGTTGGCAGGAAGACCAATATAGGGGAAACATGCAAAGCTGTGTGATCTGCTGGAAAACCTTATAAAACTGTCTTGTAGATGCTGTTAGAAATTGTGAATTGTGTTGTGAAATATTCACTGTGTCTCATAAAAGGCTTTTTAATGCAAAGTACCATACTCTTACCTGAAATCAAGAGCCCAATCATATTCCAGTCAACCAAAACATTTTTCCATATTGAATAATGAATTGCCTAAAGtggcactttcacaaaaaagaaTCATTAGAAATGACAAGATCCTGAACTATGAAAAACTACGAAAAAGCAATGGGAAGCTACATTTTTCAATGCAATAACACAACTACAGTAACTTCAAAACCGCTGCATTGGTAATTTTCCCACTTTGACCTGTCTACTCTCTTCCTTGAAAGGATTTAATGGTGAAACAAACACATTAGTGCTACAGagtgtagtcattttttttctgcatttctatGCACTTTGGTTCTCTGTTAAACCTGTTAAATGATCAGTTACTTTGGTTCAGACTTATTTCCGCTGTACTTGATACAGTAAAGTTTACTACACACATGATAAGCAAATTTATTGCACTATATCCTAAAATAACCTTTTATCAGGTTAAAGTGTGTTATGTGCAATACCTGAAATCACATGCTGTTGTTTAGTATGACATGATTCTGAGTCACATTCACTAAGACGTTCTCTGACAGAGCCTCCTCTGCAGTTACAATCTTCTTCCTTAGTGTAACATACTGTTGTTTGGGGATagggaaatgtttttatatcattgTTGCCCACTTTATTTCTCTCATCATGTCAGGTGTGACTCATTTAGAAATTCATGGAAGAATACTAAAAGATCTCTGGGTGACAGAACATGATTCTGTTGACTTATTTACTAAGAAACTGCAGTAATGTTTCAGGTAAATTTCAATTATGGAAAACCTGTAATGTGGCTAAAGGTTATTGAAATGTAGCTCACATAAGATCCGGACTTCGTGAAATATTCTGTACACAAAATGAGGTCAAAATCTGTACAAATCACACATTGATCCAGTATCAGTATATGTACtgtcaaatcaaataaacaacaaacca
>XM_026932091.2
caatcaggggaaaaaaaccacacactcaGCATCTCTGATTACAGGGGTTATTGCAAGAGAGAGCTGGGGGAGGAGCAAAAGATAAAAAGATGGAGAGGAAGAATACAGAGAGGAGTGAGTGGAAACCGAAAATGAGTagcagaaggaaagagaaaggaggTGCTAGGTGGCTCATGTCAAGTTGAGACAAGTGTAGAAAATTTTTGTCATACCATACAAACACATGTAGTAGGACTAAATATTGTGTCTCCAGGAGTGGACGAAGTGCACCAAAGAAGACAATATAGGGGATTAAGATGGCGTCAGTAAGTGACCCCCGGCAGCAGACACAGGTGCAGAAAGATGCAGCTGACCAGAACTTCGACTACATGTTTAAATTACTTATCATTGGTAACAGCAGCGTAGGAAAGACCAGCTTCCTATTCCGCTACGCAGATGACTCGTTCACCTCGGCGTTCGTCAGCACCGTTGGCATTGACTTCAAAGTCAAAACTGTGTACCGCAATGAGAAACGCATCAAACTCCAGATCTGGGACACTGCAGGTCAGGAGAGATATCGCACCATCACCACGGCCTACTACAGAGGCGCCATGGGCTTCCTGCTCATGTACGACATCACCAACCAGGAGTCTTTCTATGCTGTACAGGACTGGGCAACTCAGATTAAGACATACTCATGGGACAATGCTCAAGTTATTCTGGTTGGAAATAAGTGCGACCTGGAGGACGATAGACTGGTGGCCACGGAAGATGGACAGAGACTAGCTAATGAGTTAGGGTTCCAGTTCTTTGAGGCTAGCGCAAAAGACAACATCAATGTAAAGCAGGTTTTCGAGCGGCTTGTTGACATCATCTGTGACAAGATGAACGAGAGCATGGATGGACAGCCAAGCCCGCTGGCCAATCACAAAGGACCCAGCCTAGAGGACACGCCCCCTACCAGCCAAAATGGCTGCTCATGTTAATGATTGCTCTGttgctctctcgctctttcaaacacacacacatacacgcacacacacaaacgcacattTACGAAATGCACACATGCCTAGCCCAACACAGCCACACTCTACTGATAGACCAAGTAGTAGTAATGCAACAAAGTGTACAATGTAAGTGTATAGtacatgtgtatacacacacatagctgTACACTACAAAAACTGGTATTGACCTGTCACAGTGGTTCTCAACTGGACTTACCTCATGTCCaatatttgtctttttcattAAGTCCTGGGCCAAATGCAACCGTTCAAgccttttaatttctttcacaCAGTGAATACTGCAGTAAAAGGCTGCACCCCTCATGCACtaaaacaggaaacaaactgaaatataaCAAAGTCTAAAAAGCTACATAAACATATAAGATTTAAATATGATCCACAAAGACCAAAACACTGCATTAGTAAAGACtaaagatataataataatatcctaaTGTTCCTATACTACTAcgactactgctactactacaactactactcctactcctactactactactactactactactaataataataatataatcatcaGGTTTTATTAAGCTGTCATTACTATGCATATggagtcataataataatttttgtccTGATAGAATACCTGGGCATTCTCTTTGTTCCTGACATGTAAGCTTAAAGCTAAACAGGACTTAAGCTAAGAAGGCTtcatacttttattttcttattttaaaggTTCAGTCAATGATTTTGGGAGAAATTAGCAAAACTAGGTTTTTGAATTCAAAAGCCACATCCCCTAAGCTAGAACACCTGTAGGCTTTCTAAATTGCCAGGCTACATGACTGACAAGAAAGCTGTCCTGATTAGTTAAATCTTAATGGCCCACATgatttccttctctcttttttatagTCTGGGTGTCCCACAGAGACCTGACTTTCTCCTTCTCAGTATATTCTGAGATATTTTAAATAGAATTCTGACAAAATTCCCAAAATGTTTTCTCTCATTattgtgtcatatttttgtttggAAGCCATGTTGTGAAAAGCTACCAAACTGCTGTGTGCATTTACTGCTATAAGTGTGCTTTTTTATTCCGCTAAATAAACTGTTATTATAGACCTGAGATGAATTTATATCACATCTCGGGTTTAAGatttaaacagaaaacactGGATGTCTTTGAAATTTAAGTAGCACATGTCTGCTTGCAACCCACCAGCTGAGAACCACTGAGCCAACAGAGATCAATTAGTCCCATAATCATACACAATCATACTTCATACATCCATGCAGAGTGTTACACAATGGCAGCATGGCTGTTTTAAGGCTATAGCATCTCAAAAGTAGCAGGGAATTGAAGGTCATGTTCAGATTTCAAAACCAAAGATTCATGTGAATGTATTTTACACCTTGCTGATGTCATGTCAATGGCACAGTGACTGAATGTAGGAAgtgaatgagattttttttccccccaaagtTGTTAGATTTTGCTTTTATCAAATTAGGCCACTGGATCAGATTTTACTTATTGTGATCAGATACAGAATGTCCAGGAAATTTCAGCTTTCTGACATTTCAAAGACTATATTTTAAAGCCGTCCTGCCTCCTTGTGGACACTGAATGTAACCGCTGTGCAGCTCTGTATCAGAGTCCTGAGCTCTATGATCTCAAATCTAGGAGGCTGAAACACACCATGGTTTAATGTTGTTTTGCTCAAGCTCATCTTATTCATGTTATGCTacttattaattaaatgaagaATGAAATTAGGGTATGTTGGCAGGAAGACCAATATAGGGGAAACATGCAAAGCTGTGTGATCTGCTGGAAAACCTTATAAAACTGTCTTGTAGATGCTGTTAGAAATTGTGAATTGTGTTGTGAAATATTCACTGTGTCTCATAAAAGGCTTTTTAATGCAAAGTACCATACTCTTACCTGAAATCAAGAGCCCAATCATATTCCAGTCAACCAAAACATTTTTCCATATTGAATAATGAATTGCCTAAAGtggcactttcacaaaaaagaaTCATTAGAAATGACAAGATCCTGAACTATGAAAAACTACGAAAAAGCAATGGGAAGCTACATTTTTCAATGCAATAACACAACTACAGTAACTTCAAAACCGCTGCATTGGTAATTTTCCCACTTTGACCTGTCTACTCTCTTCCTTGAAAGGATTTAATGGTGAAACAAACACATTAGTGCTACAGagtgtagtcattttttttctgcatttctatGCACTTTGGTTCTCTGTTAAACCTGTTAAATGATCAGTTACTTTGGTTCAGACTTATTTCCGCTGTACTTGATACAGTAAAGTTTACTACACACATGATAAGCAAATTTATTGCACTATATCCTAAAATAACCTTTTATCAGGTTAAAGTGTGTTATGTGCAATACCTGAAATCACATGCTGTTGTTTAGTATGACATGATTCTGAGTCACATTCACTAAGACGTTCTCTGACAGAGCCTCCTCTGCAGTTACAATCTTCTTCCTTAGTGTAACATACTGTTGTTTGGGGATagggaaatgtttttatatcattgTTGCCCACTTTATTTCTCTCATCATGTCAGGTGTGACTCATTTAGAAATTCATGGAAGAATACTAAAAGATCTCTGGGTGACAGAACATGATTCTGTTGACTTATTTACTAAGAAACTGCAGTAATGTTTCAGGTAAATTTCAATTATGGAAAACCTGTAATGTGGCTAAAGGTTATTGAAATGTAGCTCACATAAGATCCGGACTTCGTGAAATATTCTGTACACAAAATGAGGTCAAAATCTGTACAAATCACACATTGATCCAGTATCAGTATATGTACtgtcaaatcaaataaacaacaaacca

Function

symbol description
rab3da Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in protein localization to plasma membrane; regulation of exocytosis; and secretion by cell. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be active in endosome; plasma membrane; and synaptic vesicle. Orthologous to human RAB3D (RAB3D, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-3D-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07884 RAB3D; Ras-related protein Rab-3D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932090.2 False 3846 mRNA 0.39 5 11448379 11464622
XM_026932091.2 True 3859 mRNA 0.39 5 11448379 11461677

Neighbor

gene id symbol gene type direction distance location
tspan34 NA coding downstream 2285 11434514 ~ 11446094 (-)
psmb13a LOC108258499,LOC108433729,LOC103024985,LOC106569958,LOC107104818 coding downstream 38265 11404116 ~ 11410114 (-)
LOC113537507 psmb8a,psmb8,LOC108258500,LOC108258501,LOC107694758,LOC107549856,LOC107554342 coding downstream 45806 11399622 ~ 11402573 (-)
psmb12 pb9la,lmp2/d,LOC108433731,LOC103024673,LOC106569959,LOC106588399 coding downstream 57177 11385636 ~ 11391202 (-)
psmb9a psmb9-a,psmb9-b,psmb9a,LOC108258508,LOC108433730,LOC103024362 coding downstream 64108 11380912 ~ 11384271 (-)
pld6 pld6 coding upstream 2782 11467404 ~ 11471543 (-)
trnar-ucu_14 NA coding upstream 8258 11472880 ~ 11472971 (-)
spp2 spp2 coding upstream 74758 11539380 ~ 11543697 (-)
alg11 alg11,LOC107556718,LOC107705036,LOC107588826 coding upstream 82352 11546974 ~ 11552722 (-)
march4l march4,LOC108258493,LOC106596293,LOC107567720,LOC107663921,LOC107722703,LOC107558390 coding upstream 202287 11666909 ~ 11690520 (-)
G374230 ddx39aa,ddx39ab,LOC100304672,LOC107603018,LOC107692155,LOC105901571 non-coding downstream 87958 11358843 ~ 11360421 (-)
G374198 grin2b,grin2bb,LOC108258482,LOC107603025,LOC107551907,LOC107676879 non-coding downstream 205542 11238241 ~ 11242837 (-)
G374196 LOC108258482,LOC107676879,LOC107551907,LOC107603025,LOC107692185 non-coding downstream 210948 11237062 ~ 11237431 (-)
G374111 NA non-coding downstream 300706 11147454 ~ 11147673 (-)
G374105 NA non-coding downstream 308568 11139183 ~ 11139811 (-)
G374370 NA non-coding upstream 129344 11593966 ~ 11594981 (-)
G374371 NA non-coding upstream 130570 11595192 ~ 11596239 (-)
G374442 NA non-coding upstream 204371 11668993 ~ 11669256 (-)
G374495 c26h3orf70 non-coding upstream 287952 11752574 ~ 11755115 (-)
G374657 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393 non-coding upstream 469912 11934534 ~ 11943075 (-)
lipt1 lipt1 other downstream 575823 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 1013012 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 1529600 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 2837538 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 3015941 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 614269 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 1160429 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 1843091 13307713 ~ 13320530 (-)
G375428 NA other upstream 1974597 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 2507714 13972336 ~ 13980251 (-)

Expression


Co-expression Network