msx1b (LOC108258334)


Basic Information

Item Value
gene id msx1b
gene name LOC108258334
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8796367 ~ 8798248 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932095.2
aaaaaaaaggaagaagttagcgagtgagtgagtgagtgagtgagagcgCCGTGTAGGAGTGTAGGAACATAGTCCACATGCTGAAGCATCGCGACGCGACGCCCTAGGAGCCCGACATGACTTCTCCTAAGGGAACTGTTCAGTTTGAAGCCTCGCCTCGCGATAAGACGGACTCAGAGGGCGAGGAGAGCAGAGCGAAGGACGCGGCGAGCAGCGCGGAGCAGAAGAGCAGAGCGAGCCGCCACCCCTTCAGCGTCGAGTCGCTCATCTCCAAGAAGAGCACCTGCAGGAGCACCTATTCTCCTCCTGCACCTTTCCCAGAGCATCTGAGCCAGTACTCTCAGAGGACTTACTTCCCACAGAAAAGTCAGGCTGCAGCGGAAACTTTCCCGCATGTGGCGGACTGCCTGAACGACGAGAGCGAAGACTCGAGTGACAAGGAACAGAGCACTTGGCTGAAGAGCCCGACTTTCTCATCCCCGCAGAGAGCTGCAAGTCCTCCGTCGACGTGCCACCTGCGCAAGCACAAGACCAACCGCAAGCCGCGCACCCCGTTCACCACGGCGCAGCTGCTGGCGCTGGAGCGGAAGTTCCGTCAGAAGCAGTACCTGTCGATCGCCGAGCGCGCCGAGTTCTCCAGCTCCCTGAGCCTGACCGAGACGCAGGTGAAGATCTGGTTCCAGAACAGACGCGCCAAGGCCAAGCGGCTGCACGAAGCCGAGCTGGAGAAACTGAAGCTGGCTGCTAAACCCGCACTGCCCGCCGCCCTGGCCTTGCCCTTCTCTCTCGCCGCGCACGCGCCTCCGGCTGTGTACGGCGCCGCCGCGTCCGCGCTCCCGCGCCCGAGCCTCGCCGTGCCCGCGCTCTTCGGCTCGCCTTATGGAATGTATTACTTATCCTAATAACAACCCAAACAAGAACTGCGCGCGCTCCATCGCGCCTGTGCGTTTCCAACACTCTTCATAATGTGCAGTTGCAATAACTTTTGACAAAACAAATGACTCCAATACCTCTTATTGCTGCCTCCAGTGTTTTTTGGAGCTATGGagatgttcttcttcttctttttttttttttaattttgtttttaaagccatCTCCTCGATGACTGACTTgtagccttaaaaaaaaaccataagaATGCCAGATATGTCTGACAAAATGCAGTgataagtgtatgtgtgatgtataTATTCATGCTCTTGTGGAGCAGGTTCGTCTGGATTGATTCATACATTGCGATGTTttaaaaggaattaaaaaaaaaagaaaaaaa

Function

NR:

description
PREDICTED: homeobox protein MSH-B

GO: NA

KEGG:

id description
K09341 MSX; homeobox protein MSX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932095.2 True 1276 mRNA 0.54 2 8796367 8798248

Neighbor

gene id symbol gene type direction distance location
taf5 taf5,LOC107583167,LOC107684290,LOC107676012 coding downstream 44117 8743452 ~ 8752250 (-)
pdcd11 pdcd11,LOC104950700 coding downstream 55950 8710383 ~ 8740417 (-)
LOC113537765 NA coding downstream 99054 8694537 ~ 8697313 (-)
col17a1a col17a1 coding downstream 127048 8640512 ~ 8669319 (-)
cracdlb LOC108259003 coding downstream 205949 8572271 ~ 8590418 (-)
caly caly,LOC108258305,LOC108434710,LOC103039857,LOC105891014 coding upstream 37239 8835487 ~ 8848164 (-)
sorcs3 LOC108258285,LOC108443686,LOC107746061,LOC107566138,LOC107684317,LOC105891017,LOC103472494,LOC106951909 coding upstream 508485 9306733 ~ 9547257 (-)
cfap58 cfap58 coding upstream 798766 9597014 ~ 9705826 (-)
sh3pxd2aa sh3pxd2a coding upstream 1008924 9807172 ~ 9823708 (-)
stn1 obfc1 coding upstream 1121574 9919822 ~ 9927977 (-)
G372742 NA non-coding downstream 8226 8775032 ~ 8788141 (-)
G372522 NA non-coding downstream 352302 8428604 ~ 8444065 (-)
G372471 NA non-coding downstream 592143 8202768 ~ 8204224 (-)
G372307 NA non-coding downstream 779979 8016105 ~ 8016388 (-)
G372300 NA non-coding downstream 807169 7988950 ~ 7989198 (-)
LOC113537261 NA non-coding upstream 165337 8963585 ~ 8965621 (-)
G373288 NA non-coding upstream 961493 9759741 ~ 9759949 (-)
G373292 neurl1,LOC107676877,LOC107746052 non-coding upstream 965371 9763619 ~ 9764526 (-)
G373296 neurl1,LOC103384027 non-coding upstream 968791 9767039 ~ 9767482 (-)
G373310 neurl1 non-coding upstream 987735 9785983 ~ 9786861 (-)
tsga10 LOC108258346 other downstream 185526 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 363929 8429562 ~ 8432438 (-)
timmdc1 timmdc1 other downstream 467341 8320868 ~ 8329026 (-)
LOC113537489 NA other downstream 529095 8261435 ~ 8267272 (-)
cars2 cars2 other downstream 711828 8069402 ~ 8084539 (-)
LOC117596103 LOC102201964,LOC102304430 other upstream 1080595 9878843 ~ 9918779 (-)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 1623904 10422152 ~ 10435367 (-)
lipt1 lipt1 other upstream 2072976 10871224 ~ 10872556 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 3280643 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 3826803 12625051 ~ 12630403 (-)

Expression


Co-expression Network