emp1 (emp1,LOC108258510,LOC107718756,LOC107692152,LOC107603024,LOC107676894)


Basic Information

Item Value
gene id emp1
gene name emp1,LOC108258510,LOC107718756,LOC107692152,LOC107603024,LOC107676894
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11275262 ~ 11280128 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932103.2
tagagggaggaagggaggaaggacAGAGCGACCGATGTGCAGAGACTCTGTCTGAGATGTTGGATCAccaacaaattaaaacaagaaatacATTCAGTGCGTAAATCTGACGCAGGTTAAAACGAGTATGTTGAAAGCTTTGATTGGAATTTGCACCCTTCATCTCACAACtatctttttacttttttgggccactattgatgatGCTTGGTGGTTTACAAGGACCATGTACACAGACCTGTGGGGGAGATGGGTGATGGAGAAAAATGATGATGTCTGGATATACATGGACATACcaacatcttacagaaaagATTACTTGCAGGCAGTGCAGGCCTTTGCAGTGTTGGCCTGCTTCTTTGCAGTCATCTCCCTGTGTGTCTTCCTATTTCAACTCCTTACACTGGGGAAAGGAAAGAGGTTCACAATCTCTGGCGTTCTGCAGCTTATGTCATGCTTCTGTATTATGGTGGCCCTATCTGTCTACACGGATCACTTCCACAGAGGAGAGAAGGATGGCTGGTATGGCTGGTCGTATATCATGGCTTGGTTCGGCTGGCTGCTCGCGCTAATCAACGGCGCCATCTATGTAATCCTGCGCAAGAGGGTGGATTAAATCAGgaaactatataaaatataacaatgaaAGCTAGTAAGGGCTAGTTAGCAAGAGTGATCATGCTGATAGATTCTTGTGATTTTCAACTGCTGTTAGTCTAATTATCCTTTTGGAATAAGAATTCCTTTTGGTGTAGTTCCAGaccaaaaagattttttaacagAGAATTTGAATTGCCAGAAAAGATAAAGACcagtttgaaaaaaatactTCAAGCCATGATGTGCTTGAGATCTTCAGATCATCAAATTGTCcaaagattatattatatactgtataaattatGCATCACTGTACCCAAAACCCCATGCCCATGTGCTATACTGGATAAACTGAGGTTCTTTAGATTGGGAGAGTGATTGAGATGCAGGAATTTAATAGGAagtttatgaagaa
>XM_026932104.2
tgtgtgtgttgtgcgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgagtgaagctGCTGGTTTGTTATAAACACGCTGAAACAAGCAGGCTACCTCTCAGTACTCAGTCTATGATTAAAGCATCAGTGTGGAGTTTTTGCTGCTGGGGCCAAACTCCTAAACATAACGCcagcatggatggatggatggatggataaaaagACTGGAAGTTAAAGCAGCTAGAGATGAGACTGCGTTTTGGATCCTATAGGGGGTAATAAGGGCATTTTTCTGCCCCGGAAAATAAAATCCAGGGGTCTTTTCAGATGCAATAAGGTTAAAACGAGTATGTTGAAAGCTTTGATTGGAATTTGCACCCTTCATCTCACAACtatctttttacttttttgggccactattgatgatGCTTGGTGGTTTACAAGGACCATGTACACAGACCTGTGGGGGAGATGGGTGATGGAGAAAAATGATGATGTCTGGATATACATGGACATACcaacatcttacagaaaagATTACTTGCAGGCAGTGCAGGCCTTTGCAGTGTTGGCCTGCTTCTTTGCAGTCATCTCCCTGTGTGTCTTCCTATTTCAACTCCTTACACTGGGGAAAGGAAAGAGGTTCACAATCTCTGGCGTTCTGCAGCTTATGTCATGCTTCTGTATTATGGTGGCCCTATCTGTCTACACGGATCACTTCCACAGAGGAGAGAAGGATGGCTGGTATGGCTGGTCGTATATCATGGCTTGGTTCGGCTGGCTGCTCGCGCTAATCAACGGCGCCATCTATGTAATCCTGCGCAAGAGGGTGGATTAAATCAGgaaactatataaaatataacaatgaaAGCTAGTAAGGGCTAGTTAGCAAGAGTGATCATGCTGATAGATTCTTGTGATTTTCAACTGCTGTTAGTCTAATTATCCTTTTGGAATAAGAATTCCTTTTGGTGTAGTTCCAGaccaaaaagattttttaacagAGAATTTGAATTGCCAGAAAAGATAAAGACcagtttgaaaaaaatactTCAAGCCATGATGTGCTTGAGATCTTCAGATCATCAAATTGTCcaaagattatattatatactgtataaattatGCATCACTGTACCCAAAACCCCATGCCCATGTGCTATACTGGATAAACTGAGGTTCTTTAGATTGGGAGAGTGATTGAGATGCAGGAATTTAATAGGAagtttatgaagaa
>XM_026932105.2
CGAAGCCACTGTGGCATGGTGTGCTAGCGGTGTAGGCTTTAAGGTGGTGTGACTGGGATTTCAGAGCCGTGCAAACTCAGAATAACCGAGATGACCGAGCAGAAATGTTGCCTAGGATGATGTAATGACTTTCTCACTAATCCGTGTGGTAAAATCTGCATGCACGAGGCTGTCAAATCCCGTGACGCTGCACTATATGATGTGTGTTTAATGCCTTGGGCTGGACACGTTATTAGCGCTTATAACGTGCTTCTGATGCTTCTGGTGTGCTTTTCTAATTAAACACACATCTCCTGATGTGTCATTGTTTTGGACAGAGCATCCACTGGGAACAGCTGGAACAGCTGGCATATAGGTTAAAACGAGTATGTTGAAAGCTTTGATTGGAATTTGCACCCTTCATCTCACAACtatctttttacttttttgggccactattgatgatGCTTGGTGGTTTACAAGGACCATGTACACAGACCTGTGGGGGAGATGGGTGATGGAGAAAAATGATGATGTCTGGATATACATGGACATACcaacatcttacagaaaagATTACTTGCAGGCAGTGCAGGCCTTTGCAGTGTTGGCCTGCTTCTTTGCAGTCATCTCCCTGTGTGTCTTCCTATTTCAACTCCTTACACTGGGGAAAGGAAAGAGGTTCACAATCTCTGGCGTTCTGCAGCTTATGTCATGCTTCTGTATTATGGTGGCCCTATCTGTCTACACGGATCACTTCCACAGAGGAGAGAAGGATGGCTGGTATGGCTGGTCGTATATCATGGCTTGGTTCGGCTGGCTGCTCGCGCTAATCAACGGCGCCATCTATGTAATCCTGCGCAAGAGGGTGGATTAAATCAGgaaactatataaaatataacaatgaaAGCTAGTAAGGGCTAGTTAGCAAGAGTGATCATGCTGATAGATTCTTGTGATTTTCAACTGCTGTTAGTCTAATTATCCTTTTGGAATAAGAATTCCTTTTGGTGTAGTTCCAGaccaaaaagattttttaacagAGAATTTGAATTGCCAGAAAAGATAAAGACcagtttgaaaaaaatactTCAAGCCATGATGTGCTTGAGATCTTCAGATCATCAAATTGTCcaaagattatattatatactgtataaattatGCATCACTGTACCCAAAACCCCATGCCCATGTGCTATACTGGATAAACTGAGGTTCTTTAGATTGGGAGAGTGATTGAGATGCAGGAATTTAATAGGAagtttatgaagaa

Function

symbol description
emp1 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human EMP1 (epithelial membrane protein 1).

NR:

description
PREDICTED: epithelial membrane protein 2-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932103.2 False 1015 mRNA 0.41 5 11275262 11279363
XM_026932104.2 False 1214 mRNA 0.42 5 11275262 11280128
XM_026932105.2 True 1255 mRNA 0.42 5 11275262 11279214

Neighbor

gene id symbol gene type direction distance location
si:ch211-243a20.3 NA coding downstream 16787 11247809 ~ 11258475 (-)
trappc5 trappc5,LOC107712234,LOC107692146,LOC107676838 coding downstream 223150 11046759 ~ 11052112 (-)
mcoln1a mcoln1,mcoln1a,LOC108428233,LOC107561871,LOC107676888,LOC107718592,LOC107603030 coding downstream 229197 11025293 ~ 11046065 (-)
si:ch211-214c7.4 prr36,LOC108258951 coding downstream 255277 11001667 ~ 11019985 (-)
pkn1a LOC108428230,LOC107603033,LOC107712223,LOC107676851,LOC107561874 coding downstream 279497 10949078 ~ 10995765 (-)
LOC113537574 LOC108258505,LOC108439141,LOC107376145,LOC106957017,LOC103468358,LOC106517844,LOC102204789,LOC106930820,LOC102799753,LOC101476653,LOC102083067 coding upstream 22655 11302783 ~ 11308486 (-)
si:ch211-239f4.1 evi5l,LOC108258486,LOC108428244,LOC107676895,LOC107718810,LOC107692153 coding upstream 32637 11312765 ~ 11352381 (-)
LOC113537567 LOC108258496,LOC108428189 coding upstream 81298 11361426 ~ 11370055 (-)
LOC113537638 LOC108258487,LOC108258488 coding upstream 94377 11374505 ~ 11379803 (-)
psmb9a psmb9-a,psmb9-b,psmb9a,LOC108258508,LOC108433730,LOC103024362 coding upstream 100784 11380912 ~ 11384271 (-)
G374198 grin2b,grin2bb,LOC108258482,LOC107603025,LOC107551907,LOC107676879 non-coding downstream 32425 11238241 ~ 11242837 (-)
G374196 LOC108258482,LOC107676879,LOC107551907,LOC107603025,LOC107692185 non-coding downstream 37831 11237062 ~ 11237431 (-)
G374111 NA non-coding downstream 127589 11147454 ~ 11147673 (-)
G374105 NA non-coding downstream 135451 11139183 ~ 11139811 (-)
G374093 atf7ip non-coding downstream 154431 11084642 ~ 11120831 (-)
G374230 ddx39aa,ddx39ab,LOC100304672,LOC107603018,LOC107692155,LOC105901571 non-coding upstream 78715 11358843 ~ 11360421 (-)
G374370 NA non-coding upstream 313838 11593966 ~ 11594981 (-)
G374371 NA non-coding upstream 315064 11595192 ~ 11596239 (-)
G374442 NA non-coding upstream 388865 11668993 ~ 11669256 (-)
G374495 c26h3orf70 non-coding upstream 472446 11752574 ~ 11755115 (-)
lipt1 lipt1 other downstream 402706 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 839895 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 1356483 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 2664421 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 2842824 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 798763 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 1344923 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 2027585 13307713 ~ 13320530 (-)
G375428 NA other upstream 2159091 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 2692208 13972336 ~ 13980251 (-)

Expression


Co-expression Network