urp2 (LOC108258299)


Basic Information

Item Value
gene id urp2
gene name LOC108258299
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5409611 ~ 5412773 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932107.2
CTTACTTGGTTTAAAAGGCGTGACAGCACCTGCATGATGGTAGAGAAAGCGAAGCGCAACATTGCAGCAACAGCGCATAATAGACATCACACGTTCGACAAGCCTTCTCATTGTAGGGGCGCATTAGTGTAACAAGTGTGTGTATCGCATTGAGAGATGATATATATCATCTATTAAAAACAAGGCTCAATTAAACTCTGTACTGGACAGTTATTTTTGCTTGTAAAAGCCTGAAAAGCTAGATCTGAAATATATAGTGTCCCAGACAAAGCCAAGATGCAGAAAGGATGCATGCTGAAATTAATGTCAGTAGTAGCAATGTTGATTTTAGCTCCAGCTGTGGATGCTGCACCAATAACCTCAGAAGTACCAGACCTTCAACAGGCATCATTAAGAGGTGACAAGAAACCAACAGATCCTTGGACGAATGGCCCAGACATCCATGATATGACTACGTATTTTGATGGACAGGAAATGACAGTGCCTGTAAGACCTTCAGGTAGCTTAGACAAAGCCACAAGCAGTCCACATTATCTGGACAAAATATTGGCAGCAACTAACGGTCAAGGCCAAACACTGAAGATTGCTTCAGTTCCAGTTGATTCTGATGGACTAGAAAACATAGTAGCAGCAACCAGTGGTTTGGATAGCCAGCTTAACCTAGGCTCTGTAATGGATGACCATGAAATAGAGGAGCATGCGCCAATGGAAGAGAGCAGTGTTCACAAACCACTGAAGCTAACACCAGTAAGCGttatttcaaataaacaaagcaaGACTTTGTTAGAGAGCAAAGGTGCTAAGAGAAATCCAGCCAGCAGCACACCAGATAGACGAGAGAGGATTCTGCATATGCTGAGTGCTCTCGAGGAGCTTCACAGGTCACTGAACAGTACACTGAACAGCCGTCTCACCATCATAACAAGAGGTAATAGCAACAGTCGCAGTTCAGGAAAAAAGAGTAAAATGATCACAGAGGGCAACATGAAATCAACTACAGTGTCATCTGTGGTCAGCAAAGGTGCTTCACCAAGGGCTAGCACTGATCTCCTGAATGGAAAGGCATTCAAAAAGTCTTTGCCATCAACTCCCAAGAAAACTAACAAGAGAGtttgctTCTGGAAATACTGCTCTCAAAATTAAGCATTTCTCACACTTCAATATCGCATTCTAACATGAGCCCATGCTCATCAGCAAACAAATCTAAGGCCACTTCTAACTGATGCTTCAACAACATACTTAACATGACTTACCCCAGTGACCTCGTATGACGTGTGTAGCCTCACTGCACGAAAGCCTGTTAACCTCCTTCTACAAGTCAGTGTTGTAtgacataaataaaactttacaagcatgcaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC107698908

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932107.2 True 1359 mRNA 0.43 5 5409611 5412773

Neighbor

gene id symbol gene type direction distance location
LOC113537353 atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265 coding downstream 69090 5331920 ~ 5340521 (-)
LOC113537467 atp1a1a.4,LOC108258577,LOC108429867,LOC108429865,LOC108429869,LOC108258578,LOC108258576,LOC108429866,LOC107717913,LOC107653679 coding downstream 93416 5288685 ~ 5316195 (-)
LOC113537466 atp1a1a.4,LOC108258574,LOC108429869,LOC108429865,LOC108258576,LOC107717913 coding downstream 132519 5269510 ~ 5277092 (-)
LOC113537465 atp1a1a.1,LOC108258575,LOC108429870,LOC107653678,LOC107717912,LOC107718011,LOC107698904,LOC107555257 coding downstream 141413 5253693 ~ 5268198 (-)
brat1 brat1 coding downstream 296864 5069360 ~ 5112747 (-)
wu:fa56d06 LOC108258903 coding upstream 136780 5549553 ~ 5557090 (-)
n6amt1 n6amt1,LOC107563652 coding upstream 176999 5589772 ~ 5596095 (-)
jam2a jam2 coding upstream 483563 5896336 ~ 5908867 (-)
mrpl39 mrpl39 coding upstream 501186 5913959 ~ 5920199 (-)
mrpl16 mrpl16 coding upstream 550979 5963752 ~ 5969065 (-)
LOC113537484 NA non-coding downstream 44463 5345595 ~ 5365148 (-)
G370853 NA non-coding downstream 66531 5342755 ~ 5343080 (-)
G370845 NA non-coding downstream 159515 5249832 ~ 5250096 (-)
G370837 NA non-coding downstream 169335 5240065 ~ 5240276 (-)
G370836 NA non-coding downstream 171599 5236722 ~ 5238012 (-)
LOC113537576 NA non-coding upstream 2853 5415626 ~ 5429432 (-)
G370941 NA non-coding upstream 93339 5506112 ~ 5506317 (-)
G370942 NA non-coding upstream 95329 5508102 ~ 5508369 (-)
LOC117596170 NA non-coding upstream 97943 5510716 ~ 5518380 (-)
G371117 NA non-coding upstream 467703 5880476 ~ 5885612 (-)
LOC113537294 NA other downstream 14599 5388904 ~ 5395012 (-)
G370658 NA other downstream 520230 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 2556400 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 2835140 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 3576882 1824204 ~ 1832729 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 117219 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 529266 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 602953 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 945866 6358639 ~ 6363203 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 1457793 6870566 ~ 6910546 (-)

Expression


Co-expression Network