LOC113537567 (LOC108258496,LOC108428189)


Basic Information

Item Value
gene id LOC113537567
gene name LOC108258496,LOC108428189
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11361426 ~ 11370055 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932111.2
ttgttttgttgtggtttttttttatcttttcttttattatttcttttcgTTTTTTAAAGTATGCGCCTTGCATTCTTTGGTTATTTATACACTCAGTAGAGCCTCATACTTGGATGATTGCTGTCATTGTGTGAACTTGAGTTTGCAATAATGAAGAAATTGACCTATGTGGCTCTTTTAACATTTGCATCTGCTTGTATGGTTGATGCCAGCTGCCCAGCTGTGTGTGAATGCCCCGCCGTGCCCCCGATGTGCCCCGCTGGCGTGagtctggtgtttgatggttgTGGGTGCTGTAAAGTGTGTGCCGCCCAACTCAACCAGGACTGCAATACTCACAAGCCCTGTGACCACCATAAGGGTTTGGAATGTAATTACGGCAATGATGTGATGTTGGGAACAGGAATATGTCGAGccAAACTGGAGGGCCGCAGCTGTGAGTACAACGGTCGAATGTACCAGAACGGCGAGAGTTTCCATGTGGGCTGCAAGCACCAGTGTACCTGTATAGATGGAGCAGTGGGTTGTGGTCCTCTCTGTACCACGAGCCTGCCCCTGTCATCACCCTCCTGCCCCTACCCTCGACTGGTGCGGGTGCCTGGTCAGTGCTGCTTTAGTGTGGACTGCCACAAAGGGGCGATAGCACCACTGATGCCCCCATGGAAAACGAAGCAGCAGGCTAATGGTCCTCTAGACAAGAGCAAGAACGTGCTGGGGAACGAGTTGTGGGAGAGGAGGAATGGATGGGAAGATGAACAGGGATATAAACACTTACCAAACCCATGGGCCATTGTTCAGATGCGATGTGTGGTCCAGACGACTGATTGGTCTCCATGTTCGAGTAGTTGTGGAATGGGCGTGTCCTCTCGCGTAACCAATGACAACGCTCAATGcaagctggagagagagactcGCCTGTGCAACATACGACCCTGCAGCCCAATGGCTGCTGTTCCCAAGAAAGGGAAGAAGTGTACACGCATGCAAAAGTCACGAAAACCTGTTCACCTGTCCTACACAGGCTGCCGTAGCGTCCAAGCTTACCAGCTGAACTACTGTGGCGTGTGCACTGACGGGCGGTGCTGCATGCCACGGCGCACCCGTACCGCCTCGGTCCCTTTTCAGTGCCCTGGAGGAGGACGTTTCGACAAAGCAGTCATGTTCATCCACTCCTGCAAGTGTGGACAAGACTGTGGGCACCTGAACGAAGCAGCCATGCCGCCTCAGAAGTGGCTTTATGGAGACACACACAAGTTCATTGACTAATTTTCTGTGAAGCTGTGAAGACTTTATATGGCATAATTTGACCGTATCATGACGACAGTGCACAACACGACTGCACTGAAATGAGAATATTTAAGTGTAGTTTATACCACATAGAACACTGCTGACTCCAGTGAAGGCATATACACAGATTATAGTCCCGTTTTTTGCCTTGCAGGTTTGGTTCAGAGTTCTGCTGGTCAGCAAGTATGAATGGACGCATCGTTTTATTGCATATATATTTTGTAGTTACACAAATTATGTAAGTATACTGTAAATCTGACTGCTTCATGTAAATCCTGATGACAAAAAACTGATCTTGCAGAAAACAAAGTTTCAAACTAGCCAAGGCAATAGATTTTGTAAGATTTTGTTTGATTGCACAACACCTAACTGTTGTAACTTTTAGGTGAAATGATTAGTCAGAATTAGAAAGTTAGTTTTAGACAATATGTTTGACAAAGAAAAGacaaagtgacaaaaaaaagtcattaagtaaggaataaaacatgtttccCATAATAGCataatgggaaaataatcagtgatgggttGGTGTGATGCTGCCTGATGCAAAAGGGAGTTACAGCTACCCCAAAgttatcacttaagttatagAAGTCTATCTTTTTTACCtctcttgaagaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932111.2 True 1918 mRNA 0.46 5 11361426 11370055

Neighbor

gene id symbol gene type direction distance location
si:ch211-239f4.1 evi5l,LOC108258486,LOC108428244,LOC107676895,LOC107718810,LOC107692153 coding downstream 9045 11312765 ~ 11352381 (-)
LOC113537574 LOC108258505,LOC108439141,LOC107376145,LOC106957017,LOC103468358,LOC106517844,LOC102204789,LOC106930820,LOC102799753,LOC101476653,LOC102083067 coding downstream 52940 11302783 ~ 11308486 (-)
emp1 emp1,LOC108258510,LOC107718756,LOC107692152,LOC107603024,LOC107676894 coding downstream 81298 11275262 ~ 11280128 (-)
si:ch211-243a20.3 NA coding downstream 102951 11247809 ~ 11258475 (-)
trappc5 trappc5,LOC107712234,LOC107692146,LOC107676838 coding downstream 309314 11046759 ~ 11052112 (-)
LOC113537638 LOC108258487,LOC108258488 coding upstream 4450 11374505 ~ 11379803 (-)
psmb9a psmb9-a,psmb9-b,psmb9a,LOC108258508,LOC108433730,LOC103024362 coding upstream 10857 11380912 ~ 11384271 (-)
psmb12 pb9la,lmp2/d,LOC108433731,LOC103024673,LOC106569959,LOC106588399 coding upstream 15581 11385636 ~ 11391202 (-)
LOC113537507 psmb8a,psmb8,LOC108258500,LOC108258501,LOC107694758,LOC107549856,LOC107554342 coding upstream 29567 11399622 ~ 11402573 (-)
psmb13a LOC108258499,LOC108433729,LOC103024985,LOC106569958,LOC107104818 coding upstream 34061 11404116 ~ 11410114 (-)
G374230 ddx39aa,ddx39ab,LOC100304672,LOC107603018,LOC107692155,LOC105901571 non-coding downstream 1005 11358843 ~ 11360421 (-)
G374198 grin2b,grin2bb,LOC108258482,LOC107603025,LOC107551907,LOC107676879 non-coding downstream 118589 11238241 ~ 11242837 (-)
G374196 LOC108258482,LOC107676879,LOC107551907,LOC107603025,LOC107692185 non-coding downstream 123995 11237062 ~ 11237431 (-)
G374111 NA non-coding downstream 213753 11147454 ~ 11147673 (-)
G374105 NA non-coding downstream 221615 11139183 ~ 11139811 (-)
G374370 NA non-coding upstream 223911 11593966 ~ 11594981 (-)
G374371 NA non-coding upstream 225137 11595192 ~ 11596239 (-)
G374442 NA non-coding upstream 298938 11668993 ~ 11669256 (-)
G374495 c26h3orf70 non-coding upstream 382519 11752574 ~ 11755115 (-)
G374657 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393 non-coding upstream 564479 11934534 ~ 11943075 (-)
lipt1 lipt1 other downstream 488870 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 926059 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 1442647 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 2750585 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 2928988 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 708836 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 1254996 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 1937658 13307713 ~ 13320530 (-)
G375428 NA other upstream 2069164 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 2602281 13972336 ~ 13980251 (-)

Expression


Co-expression Network