cfap58 (cfap58)


Basic Information

Item Value
gene id cfap58
gene name cfap58
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 9597014 ~ 9705826 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932141.2
ATTTCATAAACAGCGCGACAGGAAAACATTGCCAGCTTTACATTGTATTTCAAAGTGTGTAGTTGTTTAAAACGCATAAAAGTTTGGGAACAGACACTGAAAACGTGCATCATGGAGGAGAACGCCCAGAAGCCAGAGGTGGAAGAGAACTCATTTGAAGCATTGGAGAAGGAGTTCCAGGATGTGTTGAATGAACTGGTGGGAGAGAAGAGTCTGGAGAAGTTCAGTGTGGAATATGAAAAGCTCATCACAGCCCTGAAGAAATCACACGAGAATGAGAAGAGGCTGATGACGAAATGCCGAGAGCTGAAAGCAGAGATAAGGTCCAACTCTGTCAAAGTGGAGACGGCTCTGAAGCTGTCTCAGGAAGACCAGACCACCATTATGTCACTAAAAAAGGAAATCGATAAGGCTTGGGAAATGGTGGATGCAGCTCATGAAAAGGAGAAGAGGGCTAAAGACACAATGAAGAATCTACAGCAGGAAGTAGACAATCTGACTGTACTTGTTGAGCAAGGAGCTGTTTTACCCTCAGCTGAAGTGCAGAGCGTGGACGATCTACTCAAAATCAAGGAGCAGTTGACGGCTGAGAGAGATGAGCTGCTCTCAGAGCTGGTGACACTCCGAGACAATTTCGAAAAGGCCACGACCAAGCAACATGAGGCTGAGGAAGCGAACATGAAGGCCCAAGAAACCATTTTACAGCTGCAGCAGGACATCCAGGTGCGTCTGAACGAGTGCTCGAGGGAGACGCGTCAGAAAGAGAAGCTGGAGAAGGAACTGAAACAGCTTCTTGCAGACTTTGAAGCCCAGCAGTTGGAGATTAAAACACTAAACGCACAATGCCAGCATGGCGATGAAGAGCAGCAGAGGATGGAGCAGCAGCTCCATGAGCAAAAGattCTTAACGAGAGAGTCTCTAAGGAGCTGGAGCAGCTGCAAGTGCGCAACACTAAGCTCCAGCAGGAGAATGAACAGAACTTGCTCAGCATAGAACAGCTCACCTACGAAAATAACCAACGAGCCTCTGAAcagaagattgagagagaggaggtgagTCAGATGAAGCAGGAGATTGCTAAGCTTACTAAGATAAGGGAGGCCACTCAGAAGAAGCTACGTCTGATCGAGGACCAGAAACTGGAGGTGgaacagcagagagacacactGAAGAACCAGATCACAGGCCTGGAAAAagaAATTGAGATGgcacaaaaaaagacagagattGACAAGAAGAAAATAGACGAATTGATCCGGGAGAAAGATATGCTGAGTAAGaataTGATCAAGGCGGCAAATGCCACTGAGAAGCAGTTAAACTTGGTGAAGCTGCATGAGCAGACGAAGAAGATGTTGGATCAGGAAATTCTCAACTACCGAGACGAGGCACAGAAGCAGCGCAAGATCATTTTTCAGCTGGAAAAAGAGCGGGACCGCTACATCAACGAAGCCAGCGAGCTCACAcagaagGTTTTATTGAATATGGAGGAACTTAAAGTGCGAGAAATGGAGATCTTTGAATACAAGAAGAAGATCGCTGAGGCGGAGACAAAGCTCAAGCAGCAACAGAACCTCTACGAGGCCATCAGGGCTGAACGCAACAATTATAGCAAGAATCTGCTTGATTCTCAGcatgACATCACGGAGATGAAGCGCAAGATGAAGTCCATGAGCCAAGAGAATGGTCAGCTCACAGAAGAGATCAAGAGCAAAGAGGCAGCACTGGTCAAAGAGCATCTAGAGTTCCAGCGcatagagaaagaaaaggaggctCTTAAGGCTGAACTTCAGAAGACAAAGCAGCAGGCCCAAGAGACCAAGCAGTATATGGAAAATCAGGAGGTAGAAGAGCACAGGTTGCTGAAAATCATAGCAGACGCTGACGCTGAGAAAGTGCGGCAGAAGAAAGACCTGGATCAGGTAATTAGCGAGCGGGACATTCTCGGGTCTCAGCTGGTGCGGCGGAATGATGAACTGGCACTGCTTTATGAGAAGATCAAGATCCAGCAGTCCATCCTGAACAAGGGCGAGATCCAGTACAACCAGAGGGTAGAGGACATCCGCCTGCTCAAGCTGGAGATCAGGAAGCTGCGGAGGGAGAAGACAGTCCTCAACAATACTGTGTCCAATGTGGAAGACCTCAGGCGAGAGGTGTACCACATGCAAAGGGATCTGCTTAAGGAGCGAGCAAGGTGTCAGAGCTTGCAAGAAGAACTTGAAAATCCCATGAATGTCCATCGTTGGAGAAGACTGGAGGCGAGTGACCCGAGCACCTTTGAGCTGATCCAGAAGATTCACTCTCTTCAGCGGCGCCTGATAACCAAAAGCGAGGAGGTAGTGGAGAAAGAGCTTCTGCTCCAGGAGAAGGAGAAGCTGTATGTGGAGCTGAAGCACATATTAGCTCGTCAGCCTGGTCCAGAGGCAGCCGAACAACTTCAGATCTACCAGCAAACGCTGAAGGAAAAGACCAAACAGCTCAAGgcaCTGTCATCCGAACTCAACATGTACGAGTCTCAGGCACAGGAGTACAAATACGAGATTGAGCGACTGGCTGGTGAGCTACAGAACGTGAAGAAGAAGTATTTCATGCAGAAACGCAAGGAGCAGGCATGCAGggaaaaagaaaggagtCTGGCGCAGGCTGGGCAACCCCTGATCGTGCCTCAACGCATCGATGGACCCCGTTTTACTGGAGGAGGCTTCAGCCTGAAGCAGGGCAACAAAATTGCTGCCTGAAACCCCTaatctctcctctccctctctctctctctctctctctctctctctctctctctctgtgagtctGGCTGACACACCGGCTGGCTGTTCAATCTGCgaaaataaatcacacagtGTAACATTATGGTCGAATgaaattaaaaagcaaaagcCATTGTACTCATTTATCAATTGTAAGTAAAGCAGATGTGTTTGCACTCATGTTAATGGCTTTGGTTTGTTTCTTTGGTTTCATTAGCGGGGTTGTTCTTAGTCATGGGTTGAAAGAGCAGAAGCACTCTCGCTATtaatgatctgtttttttttcatttacttcCACACTTTTTCACTCTTGtattgtctgtttttgtctcccatgtttttcatgtgtttatctTCTAGGTTGTTTCTCACTCTCGTTCATTTTCaccctttattattatttttttcttttttttcccatccgTATTTGCCTGCCTTTATgactctctatttctgtctctacCAGAGCAAATACTAACAGTAAGGTGAAAGGTGACTGCTGATGATGAGTCGACTCTGCTCCTGAACCTCCCATTCAATCTCTCTTAAACACCTTCGACAAACATGATTAAATGTCACTCATTCCCCAGATACATGCTGTACATCGCGTGTAAATGTAAGTGAGCACGTATGTTCATGTCTAAACATTACCATGGCCCTAAGGAAATAAGTCATCCTTTCTAAGACCCATGCACGTTTCTTTTTCTTGTAATCAACAGGCTTTTTTAAAGGAacaacctctttttttcttttcttttagaaGTTATGCAGTGTTAATATGCTCATGGACTAGAAACTTGTCATTAATATCAAACCAAAGCCTATTTCATGCAAAACAACTCATGCAATTCTTATTTTATAATTGTCCATATTTTGGACAATGTATATTGCATGTACTATTGGTTTTTCAATGTACCTCACATGAATATGCTTATGCGTACACATTCACACTACCTGGACTAGGGTATTTTTCCTGCAGTCATTTTTGGGCTGcccatttcctgtttttattttttaattttttttaatttattttattttatttttattta

Function

symbol description
cfap58 Predicted to be active in cytoskeleton. Human ortholog(s) of this gene implicated in spermatogenic failure 49. Orthologous to human CFAP58 (cilia and flagella associated protein 58).

NR:

description
cilia- and flagella-associated protein 58

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932141.2 True 3815 mRNA 0.45 19 9597014 9705826

Neighbor

gene id symbol gene type direction distance location
sorcs3 LOC108258285,LOC108443686,LOC107746061,LOC107566138,LOC107684317,LOC105891017,LOC103472494,LOC106951909 coding downstream 49757 9306733 ~ 9547257 (-)
caly caly,LOC108258305,LOC108434710,LOC103039857,LOC105891014 coding downstream 748850 8835487 ~ 8848164 (-)
msx1b LOC108258334 coding downstream 798766 8796367 ~ 8798248 (-)
taf5 taf5,LOC107583167,LOC107684290,LOC107676012 coding downstream 844764 8743452 ~ 8752250 (-)
pdcd11 pdcd11,LOC104950700 coding downstream 856597 8710383 ~ 8740417 (-)
sh3pxd2aa sh3pxd2a coding upstream 101346 9807172 ~ 9823708 (-)
stn1 obfc1 coding upstream 213996 9919822 ~ 9927977 (-)
lrrc58a LOC108258943,LOC108428195,LOC107566531 coding upstream 225623 9931449 ~ 9937173 (-)
fstl1a LOC108258944,LOC108428196,LOC103028151,LOC106575075,LOC105019681 coding upstream 233470 9939296 ~ 9961370 (-)
gja8b gja8,cx44.1,LOC108258942,LOC107566539 coding upstream 262625 9968451 ~ 9970159 (-)
LOC113537261 NA non-coding downstream 631393 8963585 ~ 8965621 (-)
G372742 NA non-coding downstream 808873 8775032 ~ 8788141 (-)
G372522 NA non-coding downstream 1152949 8428604 ~ 8444065 (-)
G372471 NA non-coding downstream 1392790 8202768 ~ 8204224 (-)
G372307 NA non-coding downstream 1580626 8016105 ~ 8016388 (-)
G373288 NA non-coding upstream 53915 9759741 ~ 9759949 (-)
G373292 neurl1,LOC107676877,LOC107746052 non-coding upstream 57793 9763619 ~ 9764526 (-)
G373296 neurl1,LOC103384027 non-coding upstream 61213 9767039 ~ 9767482 (-)
G373310 neurl1 non-coding upstream 80157 9785983 ~ 9786861 (-)
G373316 NA non-coding upstream 86456 9792282 ~ 9792621 (-)
tsga10 LOC108258346 other downstream 986173 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 1164576 8429562 ~ 8432438 (-)
timmdc1 timmdc1 other downstream 1267988 8320868 ~ 8329026 (-)
LOC113537489 NA other downstream 1329742 8261435 ~ 8267272 (-)
cars2 cars2 other downstream 1512475 8069402 ~ 8084539 (-)
LOC117596103 LOC102201964,LOC102304430 other upstream 173017 9878843 ~ 9918779 (-)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 716326 10422152 ~ 10435367 (-)
lipt1 lipt1 other upstream 1165398 10871224 ~ 10872556 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 2373065 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 2919225 12625051 ~ 12630403 (-)

Expression


Co-expression Network