rln3b (rln3)


Basic Information

Item Value
gene id rln3b
gene name rln3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15074671 ~ 15077616 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932164.2
CACAATTTGTCCATCAGTCTCATCTTTGCTCATCATTCTATCCAGTCCTTACATTCAGTTCTTGCCGTTTTTGCCGTCATGTATAAAGAGATCGTGCTGACTCTGAGCCTGCTGGTGGCGCTGGTGTGCCGAGCCCAGGCCAACGAGGGTCACCCCATCTATGGCGTGAAGCTGTGTGGGAGGGAATTCATCCGTGCCGTCATCTTCACCTGTGGAGGCTCGCGCTGGAGAAGATCCGTGGGGATGCCAGGTGAAACTGGTGATTTAGCCAGCGACTTTTTCTCCACTCATGATGATGAGGCCTCAGACAGCTGGAGCTCCCAACTCATCCCCCATCTTTCTTACAAAGCTCAGGCTGACCCGGAGGTGGACGGCTTGGCCAGTGAGGGTCCAGACAGCTTAGCGTTCATCCGCCCGGCACGCTCACTCATCTCAGATGAGGTCCTCGAGGCTCTGCGCACCTCCGACAGGAAAGGCAGGGACGTGGTGGTGGGTCTGTCCAACGCCTGCTGCAAGTGGGGCTGCAGCAAGAGCGAGATCAGCTCCCTGTGCTAAAACAGACTCTTCCCTTCCAGCTCCATTCGTCCATGTGTGTCCATCTCAGACTGTAGTGTTGATGTCTTTAATGTTTGCTGTTGGGAGGGATGGTGTGTTAGGTGGCCTAATTTGAATACAGCAGCTGGGgtgtaatgtattaaaatttatgCAAGTGTGGTGCATCTCTGAAAGAAAACGTTTCTCTGTGTCTTACACTCTGCCCTGCCCTGAT

Function

symbol description
rln3 Predicted to enable G protein-coupled receptor binding activity. Predicted to be involved in signal transduction. Predicted to be located in extracellular region.

NR:

description
PREDICTED: relaxin-3

GO: NA

KEGG:

id description
K22000 RLN3; relaxin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932164.2 True 769 mRNA 0.53 2 15074671 15077616

Neighbor

gene id symbol gene type direction distance location
spast spast coding downstream 2326 15060921 ~ 15072345 (-)
LOC113537617 NA coding downstream 116470 14953561 ~ 14958201 (-)
cct4 cct4,LOC107700877,LOC107594293 coding downstream 176529 14890222 ~ 14898142 (-)
fam161a fam161a coding downstream 185762 14880246 ~ 14888909 (-)
xpo1a xpo1,LOC108258411,LOC107746076,LOC107729732,LOC107703835,LOC100380723,LOC106585804 coding downstream 196087 14854881 ~ 14878584 (-)
dcaf15 dcaf15,LOC106592097,LOC106594349 coding upstream 26561 15104177 ~ 15113293 (-)
dla LOC108258338,LOC103023774,LOC108438608,LOC107746130,LOC107703728,LOC107598533,LOC107700799,LOC107594356 coding upstream 58617 15136233 ~ 15142801 (-)
ccsapa LOC108258518 coding upstream 95122 15172738 ~ 15180828 (-)
acta1a acta1,LOC102689871,LOC108414322,LOC108430668,LOC103383882 coding upstream 104017 15181633 ~ 15186072 (-)
nup133 nup133,LOC107700801,LOC107729904,LOC107746127,LOC106958119,LOC106908639,LOC107729676 coding upstream 113689 15191305 ~ 15208140 (-)
G376574 NA non-coding downstream 29312 15044712 ~ 15045359 (-)
G376364 NA non-coding downstream 39205 15035165 ~ 15035466 (-)
G376171 NA non-coding downstream 334864 14739369 ~ 14739807 (-)
G376127 taf5l non-coding downstream 413360 14657946 ~ 14661311 (-)
G376093 NA non-coding downstream 541987 14532367 ~ 14532684 (-)
G376602 NA non-coding upstream 21400 15099016 ~ 15101012 (-)
G376608 LOC108259073 non-coding upstream 54401 15132017 ~ 15132290 (-)
G376613 NA non-coding upstream 70169 15147785 ~ 15147985 (-)
G376615 NA non-coding upstream 75276 15152892 ~ 15153120 (-)
LOC117596121 NA non-coding upstream 80530 15158146 ~ 15158646 (-)
akt3b akt3b,LOC108259077,LOC108438606,LOC107594289,LOC107703832,LOC107729704,LOC101071975 other downstream 113619 14910662 ~ 14961052 (-)
b3gnt2a LOC108259010 other downstream 324937 14740132 ~ 14749734 (-)
ifngr1 NA other downstream 362025 14697239 ~ 14712646 (-)
G376143 NA other downstream 390343 14682387 ~ 14684328 (-)
meis1a meis1 other downstream 550155 14460283 ~ 14524516 (-)
triobpa LOC108259073 other upstream 39896 15117512 ~ 15129256 (-)
dpy30 dpy30,LOC107684266 other upstream 334808 15412424 ~ 15458205 (-)
G376956 NA other upstream 840012 15917628 ~ 15920553 (-)
khsrp khsrp other upstream 852137 15929753 ~ 15942730 (-)
vps54 vps54,LOC107709616 other upstream 886260 15963876 ~ 15984959 (-)

Expression


Co-expression Network