pld6 (pld6)


Basic Information

Item Value
gene id pld6
gene name pld6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11467404 ~ 11471543 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932170.2
TCCGGTTCCCGAGATTAGCTTTCTAGCTAGTCATAATCCAAAAGTGTCTGTAGAAATAAACTCCAACATGATATAACACTGAATTAGACTATATTTGTACTTGCACAAATCAAAAACGACAAAATTAAACAGTCTTGGCGTATCTGAATGGATTTATAAGTTTGGTTGCttattagctaactagctagctgttaAACAGATTTAAGAGGATGTTACCCGGATGTAGCGGTTCAGACACAATACACTAATAATTATTGCAACATGGGCTTTTCAGAACTTTTCAAAACTTTTCAAAACTGAGAAATACAATCTGCAGAGGTTTTGTTCAACACATTGATCATTTTGATGAATCACAACAatgagtaaaaagtaaaaacaagtgGAAATAATTTAGGTCAAGGAAAGATAGATTACTTTGATAGATCTTTATCGTCTCATTTTCACCACCTCTCCTCTGTCTGTGCTGTGTGAGATGTCTCTGGCGGAGTTATTGAAGATGCTCGGTCTCGGGGCAGTGGCCATCGCATTAGGCCTGGAAGGGTTGGACTGGTTGCTGACTCGGCATCTCTGGCCCAGAAGATGTTCCCGTCAGCCCCTGAAGGAGGTTCTCTTCTTTCCTTCACCACCAACATGTGTGGAGCACTTGTACAATCCAGTCAGGGCTCATCCAtgCCTGTGTCCCCTCCCTCATGGCCTGGACACACCCTTTTCTAGACTCCTTGAACACCTTCTCTCAGCGTGTGTGTCGCTGGACCTTTGTCTGTTCTCCTTCTCCAACATTGAGCTGAGCCGGGCCGTGCTGCTGTTACACAGCCGGGGTGTGCGGGTGCGAGTGCTCACAGATCGAGACTACATGGCTATCACTGGCTCTCAGATCGGCGTCCTCCGCAAGGCAGGTATCTGTGTGAGGCACGAGCTGGTAATCACCATGCATATGCATCATAAATTTGCATTGCTGGATGGCAGGAAGCTGATCACCGGCTCCCTCAACTGGACCATGACAGCAGTGCAGAGCAACAAGGAGAACGTAATAGTGACCGAGGACCCGCAGCTTGTTCAACCCTATGAGGACGAGTTCAACAAGCTGTGGGAGGCCAATGACCCGGCCAAACAcccaccacaaacacacagcaggaaTAACACGAAGGGACTGCTGACGCCCACCAGGGACGAGTAGCTGGACACAGAGTTAGCTGCTTTTCACATGTAtaattagttttgttttatatagAAGGATTAGCTTGAGAAGTTTTTTTCACTCTGGGTTTGTTACAGAATTTCaaggaaattatttaaattttatttttatatatatagttttacagaatctgttgttttatttcaatattaggTGTTTTTGAGTATGGATATAATTAGGTTTATATtagttcatttaaatatttcagggACATGGAGATGATTGGATTATTgttgtttgctgtttgtttgttttttaattcttcAACGACTTATCCACTTCAAGGATATTGAATGGTGGACAGATGTTAAAAACATATTGATTGCCATGCTCAGTATCTGTTATTGTGCTTAAAATCTGAATCTGATGCAGACAGGGAAGAGAAATAATGCATCTTACTTGGGGAGGACTAAACTACAATGCCtcaggtgaaataaaactgCTTTTATTGGCCTAAATCTGACTTTGTGCCAAAACATT
>XM_026932171.2
TTTGCGAATCAATTTGCTTTAAAAGATTTGATCAAAAGGAACCGATTCGTTCATCTAATAGCTGATTGCTGTTCTGCATGTCACAAAAGTACTTACCAGAGGTGGCGTAAGATGTCTCTGGCGGAGTTATTGAAGATGCTCGGTCTCGGGGCAGTGGCCATCGCATTAGGCCTGGAAGGGTTGGACTGGTTGCTGACTCGGCATCTCTGGCCCAGAAGATGTTCCCGTCAGCCCCTGAAGGAGGTTCTCTTCTTTCCTTCACCACCAACATGTGTGGAGCACTTGTACAATCCAGTCAGGGCTCATCCAtgCCTGTGTCCCCTCCCTCATGGCCTGGACACACCCTTTTCTAGACTCCTTGAACACCTTCTCTCAGCGTGTGTGTCGCTGGACCTTTGTCTGTTCTCCTTCTCCAACATTGAGCTGAGCCGGGCCGTGCTGCTGTTACACAGCCGGGGTGTGCGGGTGCGAGTGCTCACAGATCGAGACTACATGGCTATCACTGGCTCTCAGATCGGCGTCCTCCGCAAGGCAGGTATCTGTGTGAGGCACGAGCTGGTAATCACCATGCATATGCATCATAAATTTGCATTGCTGGATGGCAGGAAGCTGATCACCGGCTCCCTCAACTGGACCATGACAGCAGTGCAGAGCAACAAGGAGAACGTAATAGTGACCGAGGACCCGCAGCTTGTTCAACCCTATGAGGACGAGTTCAACAAGCTGTGGGAGGCCAATGACCCGGCCAAACAcccaccacaaacacacagcaggaaTAACACGAAGGGACTGCTGACGCCCACCAGGGACGAGTAGCTGGACACAGAGTTAGCTGCTTTTCACATGTAtaattagttttgttttatatagAAGGATTAGCTTGAGAAGTTTTTTTCACTCTGGGTTTGTTACAGAATTTCaaggaaattatttaaattttatttttatatatatagttttacagaatctgttgttttatttcaatattaggTGTTTTTGAGTATGGATATAATTAGGTTTATATtagttcatttaaatatttcagggACATGGAGATGATTGGATTATTgttgtttgctgtttgtttgttttttaattcttcAACGACTTATCCACTTCAAGGATATTGAATGGTGGACAGATGTTAAAAACATATTGATTGCCATGCTCAGTATCTGTTATTGTGCTTAAAATCTGAATCTGATGCAGACAGGGAAGAGAAATAATGCATCTTACTTGGGGAGGACTAAACTACAATGCCtcaggtgaaataaaactgCTTTTATTGGCCTAAATCTGACTTTGTGCCAAAACATT
>XM_026932172.2
GTTCATCTAATAGCTGATTGCTGTTCTGCATGTCACAAAAGTACTTACCAGAGGTGGCGTAAGGTAACAGTTAAAGCAGAAATGTCTCTGGCGGAGTTATTGAAGATGCTCGGTCTCGGGGCAGTGGCCATCGCATTAGGCCTGGAAGGGTTGGACTGGTTGCTGACTCGGCATCTCTGGCCCAGAAGATGTTCCCGTCAGCCCCTGAAGGAGGTTCTCTTCTTTCCTTCACCACCAACATGTGTGGAGCACTTGTACAATCCAGTCAGGGCTCATCCAtgCCTGTGTCCCCTCCCTCATGGCCTGGACACACCCTTTTCTAGACTCCTTGAACACCTTCTCTCAGCGTGTGTGTCGCTGGACCTTTGTCTGTTCTCCTTCTCCAACATTGAGCTGAGCCGGGCCGTGCTGCTGTTACACAGCCGGGGTGTGCGGGTGCGAGTGCTCACAGATCGAGACTACATGGCTATCACTGGCTCTCAGATCGGCGTCCTCCGCAAGGCAGGTATCTGTGTGAGGCACGAGCTGGTAATCACCATGCATATGCATCATAAATTTGCATTGCTGGATGGCAGGAAGCTGATCACCGGCTCCCTCAACTGGACCATGACAGCAGTGCAGAGCAACAAGGAGAACGTAATAGTGACCGAGGACCCGCAGCTTGTTCAACCCTATGAGGACGAGTTCAACAAGCTGTGGGAGGCCAATGACCCGGCCAAACAcccaccacaaacacacagcaggaaTAACACGAAGGGACTGCTGACGCCCACCAGGGACGAGTAGCTGGACACAGAGTTAGCTGCTTTTCACATGTAtaattagttttgttttatatagAAGGATTAGCTTGAGAAGTTTTTTTCACTCTGGGTTTGTTACAGAATTTCaaggaaattatttaaattttatttttatatatatagttttacagaatctgttgttttatttcaatattaggTGTTTTTGAGTATGGATATAATTAGGTTTATATtagttcatttaaatatttcagggACATGGAGATGATTGGATTATTgttgtttgctgtttgtttgttttttaattcttcAACGACTTATCCACTTCAAGGATATTGAATGGTGGACAGATGTTAAAAACATATTGATTGCCATGCTCAGTATCTGTTATTGTGCTTAAAATCTGAATCTGATGCAGACAGGGAAGAGAAATAATGCATCTTACTTGGGGAGGACTAAACTACAATGCCtcaggtgaaataaaactgCTTTTATTGGCCTAAATCTGACTTTGTGCCAAAACATT
>XM_026932174.2
TCCGGTTCCCGAGATTAGCTTTCTAGCTAGTCATAATCCAAAAGTGTCTGTAGAAATAAACTCCAACATGATATAACACTGAATTAGACTATATTTGTACTTGCACAAATCAAAAACGACAAAATTAAACAGTCTTGGCGTATCTGAATGGATTTATAAGTTTGGTTGCttattagctaactagctagctgttaAACAGATTTAAGAGGATGTTACCCGGATGTAGCGGTTCAGACACAATACACTAATAATTATTGCAACATGGGCTTTTCAGAACTTTTCAAAACTTTTCAAAACTGAGAAATACAATCTGCAGAGGTTTTGTTCAACACATTGATCATTTTGATGAATCACAACAatgagtaaaaaATGTCTCTGGCGGAGTTATTGAAGATGCTCGGTCTCGGGGCAGTGGCCATCGCATTAGGCCTGGAAGGGTTGGACTGGTTGCTGACTCGGCATCTCTGGCCCAGAAGATGTTCCCGTCAGCCCCTGAAGGAGGTTCTCTTCTTTCCTTCACCACCAACATGTGTGGAGCACTTGTACAATCCAGTCAGGGCTCATCCAtgCCTGTGTCCCCTCCCTCATGGCCTGGACACACCCTTTTCTAGACTCCTTGAACACCTTCTCTCAGCGTGTGTGTCGCTGGACCTTTGTCTGTTCTCCTTCTCCAACATTGAGCTGAGCCGGGCCGTGCTGCTGTTACACAGCCGGGGTGTGCGGGTGCGAGTGCTCACAGATCGAGACTACATGGCTATCACTGGCTCTCAGATCGGCGTCCTCCGCAAGGCAGGTATCTGTGTGAGGCACGAGCTGGTAATCACCATGCATATGCATCATAAATTTGCATTGCTGGATGGCAGGAAGCTGATCACCGGCTCCCTCAACTGGACCATGACAGCAGTGCAGAGCAACAAGGAGAACGTAATAGTGACCGAGGACCCGCAGCTTGTTCAACCCTATGAGGACGAGTTCAACAAGCTGTGGGAGGCCAATGACCCGGCCAAACAcccaccacaaacacacagcaggaaTAACACGAAGGGACTGCTGACGCCCACCAGGGACGAGTAGCTGGACACAGAGTTAGCTGCTTTTCACATGTAtaattagttttgttttatatagAAGGATTAGCTTGAGAAGTTTTTTTCACTCTGGGTTTGTTACAGAATTTCaaggaaattatttaaattttatttttatatatatagttttacagaatctgttgttttatttcaatattaggTGTTTTTGAGTATGGATATAATTAGGTTTATATtagttcatttaaatatttcagggACATGGAGATGATTGGATTATTgttgtttgctgtttgtttgttttttaattcttcAACGACTTATCCACTTCAAGGATATTGAATGGTGGACAGATGTTAAAAACATATTGATTGCCATGCTCAGTATCTGTTATTGTGCTTAAAATCTGAATCTGATGCAGACAGGGAAGAGAAATAATGCATCTTACTTGGGGAGGACTAAACTACAATGCCtcaggtgaaataaaactgCTTTTATTGGCCTAAATCTGACTTTGTGCCAAAACATT
>XM_026932175.2
TTTGCTTTAAAAGATTTGATCAAAAGGAACCGATTCGTTCATCTAATAGCTGATTGCTGTTCTGCATGTCACAAAAGTACTTACCAGAGGTGGCGTAAGATTACTTTGATAGATCTTTATCGTCTCATTTTCACCACCTCTCCTCTGTCTGTGCTGTGTGAGATGTCTCTGGCGGAGTTATTGAAGATGCTCGGTCTCGGGGCAGTGGCCATCGCATTAGGCCTGGAAGGGTTGGACTGGTTGCTGACTCGGCATCTCTGGCCCAGAAGATGTTCCCGTCAGCCCCTGAAGGAGGTTCTCTTCTTTCCTTCACCACCAACATGTGTGGAGCACTTGTACAATCCAGTCAGGGCTCATCCAtgCCTGTGTCCCCTCCCTCATGGCCTGGACACACCCTTTTCTAGACTCCTTGAACACCTTCTCTCAGCGTGTGTGTCGCTGGACCTTTGTCTGTTCTCCTTCTCCAACATTGAGCTGAGCCGGGCCGTGCTGCTGTTACACAGCCGGGGTGTGCGGGTGCGAGTGCTCACAGATCGAGACTACATGGCTATCACTGGCTCTCAGATCGGCGTCCTCCGCAAGGCAGGTATCTGTGTGAGGCACGAGCTGGTAATCACCATGCATATGCATCATAAATTTGCATTGCTGGATGGCAGGAAGCTGATCACCGGCTCCCTCAACTGGACCATGACAGCAGTGCAGAGCAACAAGGAGAACGTAATAGTGACCGAGGACCCGCAGCTTGTTCAACCCTATGAGGACGAGTTCAACAAGCTGTGGGAGGCCAATGACCCGGCCAAACAcccaccacaaacacacagcaggaaTAACACGAAGGGACTGCTGACGCCCACCAGGGACGAGTAGCTGGACACAGAGTTAGCTGCTTTTCACATGTAtaattagttttgttttatatagAAGGATTAGCTTGAGAAGTTTTTTTCACTCTGGGTTTGTTACAGAATTTCaaggaaattatttaaattttatttttatatatatagttttacagaatctgttgttttatttcaatattaggTGTTTTTGAGTATGGATATAATTAGGTTTATATtagttcatttaaatatttcagggACATGGAGATGATTGGATTATTgttgtttgctgtttgtttgttttttaattcttcAACGACTTATCCACTTCAAGGATATTGAATGGTGGACAGATGTTAAAAACATATTGATTGCCATGCTCAGTATCTGTTATTGTGCTTAAAATCTGAATCTGATGCAGACAGGGAAGAGAAATAATGCATCTTACTTGGGGAGGACTAAACTACAATGCCtcaggtgaaataaaactgCTTTTATTGGCCTAAATCTGACTTTGTGCCAAAACATT
>XM_034300268.1
TATCCCAcgtattattttattgtttataattcGCTTTAGTGACTATGGCTTATAATTTTTTAAGATGCCTGTTAACGTCACGTGGCGTAATAGCGCTCCTGGTTGGTCGTAGCCTTGGAAACGATGTCTCTGGCGGAGTTATTGAAGATGCTCGGTCTCGGGGCAGTGGCCATCGCATTAGGCCTGGAAGGGTTGGACTGGTTGCTGACTCGGCATCTCTGGCCCAGAAGATGTTCCCGTCAGCCCCTGAAGGAGGTTCTCTTCTTTCCTTCACCACCAACATGTGTGGAGCACTTGTACAATCCAGTCAGGGCTCATCCAtgCCTGTGTCCCCTCCCTCATGGCCTGGACACACCCTTTTCTAGACTCCTTGAACACCTTCTCTCAGCGTGTGTGTCGCTGGACCTTTGTCTGTTCTCCTTCTCCAACATTGAGCTGAGCCGGGCCGTGCTGCTGTTACACAGCCGGGGTGTGCGGGTGCGAGTGCTCACAGATCGAGACTACATGGCTATCACTGGCTCTCAGATCGGCGTCCTCCGCAAGGCAGGTATCTGTGTGAGGCACGAGCTGGTAATCACCATGCATATGCATCATAAATTTGCATTGCTGGATGGCAGGAAGCTGATCACCGGCTCCCTCAACTGGACCATGACAGCAGTGCAGAGCAACAAGGAGAACGTAATAGTGACCGAGGACCCGCAGCTTGTTCAACCCTATGAGGACGAGTTCAACAAGCTGTGGGAGGCCAATGACCCGGCCAAACAcccaccacaaacacacagcaggaaTAACACGAAGGGACTGCTGACGCCCACCAGGGACGAGTAGCTGGACACAGAGTTAGCTGCTTTTCACATGTAtaattagttttgttttatatagAAGGATTAGCTTGAGAAGTTTTTTTCACTCTGGGTTTGTTACAGAATTTCaaggaaattatttaaattttatttttatatatatagttttacagaatctgttgttttatttcaatattaggTGTTTTTGAGTATGGATATAATTAGGTTTATATtagttcatttaaatatttcagggACATGGAGATGATTGGATTATTgttgtttgctgtttgtttgttttttaattcttcAACGACTTATCCACTTCAAGGATATTGAATGGTGGACAGATGTTAAAAACATATTGATTGCCATGCTCAGTATCTGTTATTGTGCTTAAAATCTGAATCTGATGCAGACAGGGAAGAGAAATAATGCATCTTACTTGGGGAGGACTAAACTACAATGCCtcaggtgaaataaaactgCTTTTATTGGCCTAAATCTGACTTTGTGCCAAAACATT

Function

symbol description
pld6 Predicted to enable cardiolipin hydrolase activity and protein homodimerization activity. Predicted to be involved in several processes, including gamete generation; mitochondrial fusion; and piRNA metabolic process. Predicted to act upstream of or within cell differentiation; lipid catabolic process; and spermatogenesis. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be active in mitochondrial outer membrane. Orthologous to human PLD6 (phospholipase D family member 6).

NR:

description
PREDICTED: mitochondrial cardiolipin hydrolase

GO:

id name namespace
GO:0030719 P granule organization biological_process
GO:0043046 DNA methylation involved in gamete generation biological_process
GO:0007286 spermatid development biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0008053 mitochondrial fusion biological_process
GO:0016042 lipid catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0004519 endonuclease activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0035755 cardiolipin hydrolase activity molecular_function

KEGG:

id description
K16862 PLD6; mitochondrial cardiolipin hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932170.2 True 1678 mRNA 0.42 4 11467404 11471258
XM_026932171.2 False 1317 mRNA 0.44 4 11467404 11471543
XM_026932172.2 False 1287 mRNA 0.45 4 11467404 11471495
XM_026932174.2 False 1575 mRNA 0.42 4 11467404 11471258
XM_026932175.2 False 1368 mRNA 0.44 4 11467404 11471531
XM_034300268.1 False 1329 mRNA 0.45 4 11467404 11471387

Neighbor

gene id symbol gene type direction distance location
rab3da rab3da,LOC108258507,LOC108435977,LOC103040938,LOC107757002,LOC107747429,LOC107675349,LOC107569532 coding downstream 2782 11448379 ~ 11464622 (-)
tspan34 NA coding downstream 21310 11434514 ~ 11446094 (-)
psmb13a LOC108258499,LOC108433729,LOC103024985,LOC106569958,LOC107104818 coding downstream 57290 11404116 ~ 11410114 (-)
LOC113537507 psmb8a,psmb8,LOC108258500,LOC108258501,LOC107694758,LOC107549856,LOC107554342 coding downstream 64831 11399622 ~ 11402573 (-)
psmb12 pb9la,lmp2/d,LOC108433731,LOC103024673,LOC106569959,LOC106588399 coding downstream 76202 11385636 ~ 11391202 (-)
trnar-ucu_14 NA coding upstream 1337 11472880 ~ 11472971 (-)
spp2 spp2 coding upstream 67837 11539380 ~ 11543697 (-)
alg11 alg11,LOC107556718,LOC107705036,LOC107588826 coding upstream 75431 11546974 ~ 11552722 (-)
march4l march4,LOC108258493,LOC106596293,LOC107567720,LOC107663921,LOC107722703,LOC107558390 coding upstream 195366 11666909 ~ 11690520 (-)
vps8 vps8,LOC107699090,LOC107719737 coding upstream 298303 11769846 ~ 11866324 (-)
G374230 ddx39aa,ddx39ab,LOC100304672,LOC107603018,LOC107692155,LOC105901571 non-coding downstream 106983 11358843 ~ 11360421 (-)
G374198 grin2b,grin2bb,LOC108258482,LOC107603025,LOC107551907,LOC107676879 non-coding downstream 224567 11238241 ~ 11242837 (-)
G374196 LOC108258482,LOC107676879,LOC107551907,LOC107603025,LOC107692185 non-coding downstream 229973 11237062 ~ 11237431 (-)
G374111 NA non-coding downstream 319731 11147454 ~ 11147673 (-)
G374105 NA non-coding downstream 327593 11139183 ~ 11139811 (-)
G374370 NA non-coding upstream 122423 11593966 ~ 11594981 (-)
G374371 NA non-coding upstream 123649 11595192 ~ 11596239 (-)
G374442 NA non-coding upstream 197450 11668993 ~ 11669256 (-)
G374495 c26h3orf70 non-coding upstream 281031 11752574 ~ 11755115 (-)
G374657 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393 non-coding upstream 462991 11934534 ~ 11943075 (-)
lipt1 lipt1 other downstream 594848 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 1032037 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 1548625 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 2856563 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 3034966 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 607348 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 1153508 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 1836170 13307713 ~ 13320530 (-)
G375428 NA other upstream 1967676 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 2500793 13972336 ~ 13980251 (-)

Expression


Co-expression Network