LOC113537602 (tmem255b)


Basic Information

Item Value
gene id LOC113537602
gene name tmem255b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6136507 ~ 6160962 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932176.2
CCCAAAACTCCTTACCCAGGAAAGAAAACTAATATATTTAGAATAATTTAACacttttgttttagaatttcgTCTCTTTTGGTGGttaaaacaactgaaagatGCAGCAGCCCTCGGTAACCCCGAGCACAGACGCAGACTCGTCAGAGCAGTACTCAAAGAGACGTTGCACAGCGATGTGGTGCACTGTGGCTTTACACTCTCTGTCCGTCATCATCCTGCTGATCGGCCTCATGGCTGCTACCCGCACTGGAAATGTGGCAGTGGCTGGTTACTACTCAGGCATTATACTGAGCTTTGGGACGTTCTTGGGCATCGTTGGGCTCAATGTGGTGGAGAATCGCAGACCCATGTTGGTGGCCTCCATCATTTTCATCAGCCTGGGCGTAATCTCCTGCTTCTTCTGCGCCATTGTGGACGGCATCATCGCTGCTGAGTATATTGACAGGAGACCACTAATGGAAGGAAGGTGCGAGTTCTATGCCAGCAGCACAGGTTATGCGTATGACAACTACTACAATGAAGTTGTATGTCAGAACTATAACCAAGACTGCAAGCTCAAGGTGAAGACAAACACCTGTTACTGCTGTGATTTATACAGTTGTGAGAGCCCAGGGTACCACACACATTACTTTGAGTTCACGGGTGTGAGTAGTTGCTGGGACGTGGTGCACCTGCACAGGCTGCTGTGGTCTGACGTAGTGCTCAATGTGCTGGGAGTTTTCCTGGGCATCATTACTGCCGCCATACTGGGAGCCTTCAAGGATCTGGTTCCAGCTGTTCAGTCCCAGATGTCTCCCAGGCCAGCTCCTCCACCACACATCCTCTATAATCCCACCCAGCATGTGGTCACTTACGCAGGATTCTGCCCATCTGGACAAGCCCTGCCTGCTTACCCCAATTATCCAGTGCCCATGCAGCACCTTAATGGTTACCAAGCAGCCAGCCCTTCTCAGCCCAGTCCTGAGGTGCCTATGTCGCCATCGGAAGAGAGCCAGCCTCCCACTCAGCCCAACAATACCAACCCTTCAATTCCATCCCAGTCCACCTGTCCAGACACCTCAGGCTATATGCTCACTCCAAACGCACCCTCGCTCTACCCTCACTCATTAGGGCCCTTTGAAAAGCCTCCACCCTATGCCTACTGAAGGACTCAACCATTTCATTCTTTGAAAATAGAGGGCACAAACAGCCCTGGTCTAATGTGGTCAGGATGTTAGAAAAGGACTACTTGAGTAAGGTTCTCATAAAAGACTTAGAAGTGTAGAATAAGATGTTGCCTTTTAAAGAACATTATGAACAATATGAAGCGGGGAAATCATTAATTAGAACTTATTCTGATGAGTTTTTAGCACACCTCACAGCCTGATCTGAAATACTGATTCTGTTTTATCCCTCCTAACCCCCAGGggcagtgagaatcacctggataacTTCCTGTAAACTCCAGTTAAATCATGAAGTCATGTATGACGAGTTATTTGCAATAACTACCACAATTGTACAGCCATCTTTACCTTTTCTTCATCTCGCTTTGCACACAGTTCAGACCACATATACCACATACGTATCCCGTTTGGAGCTAGTTGCTTAACCGCATATGACTTGTTAGCTTTTCATCTCCCAAAGTCTAGTATGTGTGCTGCATATGTGCTGCTAGCATGGTTCAGTGCTATACCACACACTTTCTCCCTGAGCCTACTAAGTTAGCTAGACTCCACTAATGTGCATACTGGGGCTGGAGTAAAGCTGAACAGTCACAGCTTATTCACAGCTGAACAGTTGaaagttaagggccttgctcagggtcCCAACAATTGGCAATGcagggattcaaactcacaagcTTCTGATCATTAGCCCAATGCCCAATGCCTTAACCAATGAGGCATCCCTGCCTCTTCCCCTCCCTTACTCCTGCCTTCACCTTTCTGCTGAGTAAGGGTTTTTCCGTACTTTCCACCATCTAACAGACTGGCAGGCCTGTAGGTAAGTGCTGCTACCATGGATTAGTTAGTTTCCTTCACTGTACCACACACCATTTGCTGCTGAGCCCCTGCAACCTTAGCCAGATTCGCTACACTGAGGCTGGAATCACTAAGCACTGCTAGCATGATTCAGTAGGTTCGTCACATTATGGCACTCGGTCTCACAGTGAACTCAAAGCGCTCCCTAACACTGAAACAGGCCACACAATTCATCAACATGAAAGTAGATTACGCAGGCCAATACCAGCTACCAGCTCCTACTGAGGAGGCTAGTATTTATGACGGTGCAGCTTCAGGATTAGTTCTCTTGGGCTTGACATAACTGAGACATCCAGTGGGTTATCATCTGCAACTACATCCTAAGAACCACCGGAAGAGGCATGTCCTCATTTCACTGAGAGGGGCACATGTTCTTGTCTTGTCCACTTGGGAGTGATACCCCATTGGAGAGTCACCAAGGACCTCTACCTCACTGGCTGTGGGGCAGTGTTGTGCCACAGGAGGTGTGTGACCACCTGGTATGAGATCAGAACACAACACCAGCTAGAACTGAAGGTGCTCCCTCTAGCAACAGATACATCAAGCATCAAGGTTGCACGAGATCGAACAGCTTCTTCACCTTACATATAAGCTCCTCAAGTGGGCCTATCCATGGTTAGCCTCAATGAGAGCGACTCACCTAACAGGACTGTACAATAGTGCAGCAGACAGGCTGCTGAGACAGTGGCATCTGCATCCAGAATTGGGATCTGAAAAATGTTTGGCAAGGAAGATTGCAGTTCCCCTAGCAGAGCCAGGCAGCCTGGTGGGACATCTACTGCCGTTTAACCTCAACCACTGCTTCTGCCAGAATTCAAACAAAATTCAGCAGCTAGA

Function

symbol description
tmem255b Predicted to be integral component of membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932176.2 True 2864 mRNA 0.48 9 6136507 6160962

Neighbor

gene id symbol gene type direction distance location
blzf1 blzf1 coding downstream 152710 5976377 ~ 5983797 (-)
txnl4b txnl4b coding downstream 163068 5971040 ~ 5973439 (-)
mrpl16 mrpl16 coding downstream 167442 5963752 ~ 5969065 (-)
mrpl39 mrpl39 coding downstream 216308 5913959 ~ 5920199 (-)
jam2a jam2 coding downstream 227640 5896336 ~ 5908867 (-)
cenpe cenpe,LOC107751066,LOC107573438 coding upstream 1152 6162114 ~ 6190394 (-)
grk1a grk1,grk1a,LOC107748333 coding upstream 30666 6191628 ~ 6200180 (-)
tfdp1b tfdp1 coding upstream 42735 6203697 ~ 6222555 (-)
tmco3 tmco3 coding upstream 65091 6226053 ~ 6238578 (-)
lamp1a NA coding upstream 118862 6279824 ~ 6292747 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 131717 6001838 ~ 6004790 (-)
G371135 NA non-coding downstream 134894 6001179 ~ 6001613 (-)
G371153 NA non-coding downstream 137033 5998848 ~ 5999474 (-)
G371152 NA non-coding downstream 138348 5998003 ~ 5998159 (-)
G371147 ercc5 non-coding downstream 141760 5993489 ~ 5994747 (-)
G371454 NA non-coding upstream 368435 6529397 ~ 6536004 (-)
G371487 NA non-coding upstream 402887 6563849 ~ 6566945 (-)
G371595 NA non-coding upstream 647531 6808493 ~ 6815071 (-)
G371632 NA non-coding upstream 706782 6867744 ~ 6867960 (-)
G371625 NA non-coding upstream 718908 6879870 ~ 6881780 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 103114 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 184194 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 589475 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 741495 5388904 ~ 5395012 (-)
G370658 NA other downstream 1247126 4843329 ~ 4889381 (-)
LOC113537742 LOC108258591 other upstream 197677 6358639 ~ 6363203 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 709604 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 897873 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 1196309 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 1557301 7718263 ~ 7724795 (-)

Expression


Co-expression Network