brat1 (brat1)


Basic Information

Item Value
gene id brat1
gene name brat1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5069360 ~ 5112747 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932179.2
TACAGCCACGAGGAAGAGGAGACACGGCGAAGCAGCTACAGGAATAAGACAGCCATCTTACTTAAGTTACCTGCATCACCAAGCCATGGACAGTGACTGCTTAACCCTACTGCCATCTGTTTGTGAAGTTCTGGCTGATTCCACACTTTTGCTACATGATGACACATCTTTGGAAAAGCTTCTTGATTGTTTTAAAGAACTGATAACGCAGAAAGACGAGCAGTATCTTATGCAGTATCTACCATATCTCCTGCAGTTCTTGCAGAGCATAACAAAATCTCAAACAGTAGATCCCTCTGTTTTTTCATTCTCACTCAAACTTGTTGGGCTGCTGGCAGCTAAAGAGTACAGTTTCACCTTGCTGGAGGAGAAAGGAGTGTTGGAGTATATGTTTCAGCCAGAGAGCTGGCATATGCTGGAACTCTGGAAAAATTCCTCAGTACGTTATGGGTGGCTACAGGGATTGTGGAATATGTTGCAGCATCCACAGTCCATGAACTTTTTCTGCAAGAATGGATTCATTAAGTTGCTCCTCCATCTGCAAAATGACAAAGGCCTTTTCATTACTTCTTTGACTAGTCAGATTTTAGCACACATTTTAAACTCCTTCATGCCAGTAGTGCTGAGCAACAGTACTAAGAGTGAGACCCCAAACTGCTGTCCTGTCAGCACTGAGTTTGTTTCAGTTACAAAAGAAATAATGAGCCATGTAGCTGCCTCATTAGCCTCACAGGAGCAGGCTGTTATCATCTCAGCCTTAAGGTTGTTGGCCACAATTCTCACCGAGTGTGGAGAACCACTCAAGAGAATGATTTGGGAACATGTTGTGGGACCACTGGAAGTATTAGCAAATGCAAAAGATGACTCATTTACACTGCACATCATAGCAGTCCTTCAAGCTGTTGCAAGGAGTCCTGTTTTGATCCAACCAGATTGTAGAGTGGAGACACTGATGGACATCATGTTGTTTTCAAGAAGTGCAACTGAATCTGTGCAGTGTGCAGCAATTATCTTGCAAATGGAAGACTGCCCTGAAGTTTTAAAATGGAAAGCCACAGATGTAATCATGCTTCCTCTACTGTGTGCCAGTGCATCCCCACTACAGCTTCATGAACCAGATAAGCTAAATGGCTACATATCACACTTGGAGAAGCAGCTATCCCTGAAAgccttctgtgtgtgtctgctcacTCAGAGCCTGTCCGGCATAGCAGAGCATGTATGTAAGAAATCTTTAACCGATATTCCTGTTCAACTGATTGCCTCTTCTGTGATAAAACTTCTGAAAATATGCATTGGCCATCGCCCCTTCACTCTACTGGAAGCTGGTACATTTCCTCACCTTATTGGCTGTTACAAGGTTCAGCAGTGCAGTATTGACCTACTAGGTGACCTCACTGTTTATGCAGAGAGCATGGACTTAATTCAGGAGGCTTTTACTGTTCTTCTGCAGTATCTGCAGTATCCTGGCACACATGCTACAGTTTTGAAGAAAACACATCAGGCCACTCTTAAATGGCTCAGTATCTGTTCACCATCATCAGATTTATGGAGGACAGTTATACATGagcTCTTTCAATTAATGAAGAAACATGTATGTGATGGACGATGGGAAGTGAGAGATTCAACTCTGGAGTTTATTACACAGCTCACAGCCAACCTCAAAGGTAATAGTAAATATACTGAAACTCTTCATAGTAGTGGCATGATCTCAGTGCTCTTCACCTCATTGTCAGATTTAGAAGGCTATGTCCAAGCAAGTGCAGTGGCGGCTCTTGGAGAGGCAATAACTACATCTGATGTCTGTAGCAATGTGCAGgAAAAAGCTGTGACACATCTGTTGAGCATACTCTCTCAAGATACACAGAGCTTCCCACATCGTGCTGCAGTGAAGGTCTTCACTGCATGGCTAAAAAGCCCACATTGTTGTACTGCCTTGGAGCAATCTCTTAGCTCAGTGTTGTTACTTGCTGGAAATGACTTTGACTGGGAGGTTAAAGTTCACACCCTGGAGTTAGCAGATGTATTGATGGACAAATCACTAGATCATTGTCCCTGTCACTTTCAGAAGATCTATAGAAGCTCTGAAAGTACATGCTTAATGCAGGCATTAACCAAACTGAAGGATTTAGGGGTATTTGAGTTTCTGTTTAAATGCTTATTTGACTGTGACAGAACTGTTTGTCAGAAAGCTTGTTCACTCCTGCTTAAGCTAAGAACATTTATGAAAGAGATTGCTACTGTTGACCACAAAGTCCTTAGACTTGAAATATGTAAGTACAGTTGGAATGAGGAAATACTTCATAGATACCACAAAAACCGAGAGGCCATTGAGCTTAACTGTGTGAAAAATGGAGACAAAGTATCTTGTAGGCAAATGGACAGTGAAGATTCTCTTGATGTATCTCCAAAAGAGATGGATCTGTGCCAGATATTAGAATTATTAGACCTTGAGAAGATGCAACATACTTTATCACTAAGTAGTGATCATGTGATAAATTCACCAAAATCACTAAtggaagacattttatttatgacaagagaaagtgaaaagaaTATTGCAGATTGCTATTGAAAATGAGTGCTCAAAAGTGGTAATCTTGTTGTGAGGCAGTACTCTTGACATTGTATCCTGATGGCTTTGTGTTGAACAGAGAAGCCTTTGTTTTATAACACTCATAAGTAACTTTAAATGTTAAGtttcatttacaaaatttaATATAGGGCTGTACTTTAAACTCAATTATGCTTGTACATAATTGCACATAACCCctgagcttctttttttttataactagCAACTTATAATGTCTCATGTCTTGAATGGAATGTGGATTGACTGTGGTTTTCCAATTAAATATGACTATTAAAAACTGTCGAAAGGGTGTAAGAAACATTCTTCTTAAATGGAAATGTAACTTGATACACATGATCTCTGTGGACCCCAAAGTAGTCATACtcatgttcttctttttttgtttgtttgtttgtttgtttttttttttttttttttttttggctattttcATGCTATTTGGCATTATCCAGTTCATCAATAAACATATGTGATGTCCCAa
>XM_026932180.2
TACAGCCACGAGGAAGAGGAGACACGGCGAAGCAGCTACAGGAATAAGACAGCCATCTTACTTAAGTTACCTGCATCACCAAGCCATGGACAGTGACTGCTTAACCCTACTGCCATCTGTTTGTGAAGTTCTGGCTGATTCCACACTTTTGCTACATGATGACACATCTTTGGAAAAGCTTCTTGATTGTTTTAAAGAACTGATAACGCAGAAAGACGAGCAGTATCTTATGCAGTATCTACCATATCTCCTGCAGTTCTTGCAGAGCATAACAAAATCTCAAACAGTAGATCCCTCTGTTTTTTCATTCTCACTCAAACTTGTTGGGCTGCTGGCAGCTAAAGAGTACAGTTTCACCTTGCTGGAGGAGAAAGGAGTGTTGGAGTATATGTTTCAGCCAGAGAGCTGGCATATGCTGGAACTCTGGAAAAATTCCTCAGTACGTTATGGGTGGCTACAGGGATTGTGGAATATGTTGCAGCATCCACAGTCCATGAACTTTTTCTGCAAGAATGGATTCATTAAGTTGCTCCTCCATCTGCAAAATGACAAAGGCCTTTTCATTACTTCTTTGACTAGTCAGATTTTAGCACACATTTTAAACTCCTTCATGCCAGTAGTGCTGAGCAACAGTACTAAGAGTGAGACCCCAAACTGCTGTCCTGTCAGCACTGAGTTTGTTTCAGTTACAAAAGAAATAATGAGCCATGTAGCTGCCTCATTAGCCTCACAGGAGCAGGCTGTTATCATCTCAGCCTTAAGGTTGTTGGCCACAATTCTCACCGAGTGTGGAGAACCACTCAAGAGAATGATTTGGGAACATGTTGTGGGACCACTGGAAGTATTAGCAAATGCAAAAGATGACTCATTTACACTGCACATCATAGCAGTCCTTCAAGCTGTTGCAAGGAGTCCTGTTTTGATCCAACCAGATTGTAGAGTGGAGACACTGATGGACATCATGTTGTTTTCAAGAAGTGCAACTGAATCTGTGCAGTGTGCAGCAATTATCTTGCAAATGGAAGACTGCCCTGAAGTTTTAAAATGGAAAGCCACAGATGTAATCATGCTTCCTCTACTGTGTGCCAGTGCATCCCCACTACAGCTTCATGAACCAGATAAGCTAAATGGCTACATATCACACTTGGAGAAGCAGCTATCCCTGAAAgccttctgtgtgtgtctgctcacTCAGAGCCTGTCCGGCATAGCAGAGCATGTATGTAAGAAATCTTTAACCGATATTCCTGTTCAACTGATTGCCTCTTCTGTGATAAAACTTCTGAAAATATGCATTGGCCATCGCCCCTTCACTCTACTGGAAGCTGGTACATTTCCTCACCTTATTGGCTGTTACAAGGTTCAGCAGTGCAGTATTGACCTACTAGGTGACCTCACTGTTTATGCAGAGAGCATGGACTTAATTCAGGAGGCTTTTACTGTTCTTCTGCAGTATCTGCAGTATCCTGGCACACATGCTACAGTTTTGAAGAAAACACATCAGGCCACTCTTAAATGGCTCAGTATCTGTTCACCATCATCAGATTTATGGAGGACAGTTATACATGagcTCTTTCAATTAATGAAGAAACATGTATGTGATGGACGATGGGAAGTGAGAGATTCAACTCTGGAGTTTATTACACAGCTCACAGCCAACCTCAAAGATTTAGAAGGCTATGTCCAAGCAAGTGCAGTGGCGGCTCTTGGAGAGGCAATAACTACATCTGATGTCTGTAGCAATGTGCAGgAAAAAGCTGTGACACATCTGTTGAGCATACTCTCTCAAGATACACAGAGCTTCCCACATCGTGCTGCAGTGAAGGTCTTCACTGCATGGCTAAAAAGCCCACATTGTTGTACTGCCTTGGAGCAATCTCTTAGCTCAGTGTTGTTACTTGCTGGAAATGACTTTGACTGGGAGGTTAAAGTTCACACCCTGGAGTTAGCAGATGTATTGATGGACAAATCACTAGATCATTGTCCCTGTCACTTTCAGAAGATCTATAGAAGCTCTGAAAGTACATGCTTAATGCAGGCATTAACCAAACTGAAGGATTTAGGGGTATTTGAGTTTCTGTTTAAATGCTTATTTGACTGTGACAGAACTGTTTGTCAGAAAGCTTGTTCACTCCTGCTTAAGCTAAGAACATTTATGAAAGAGATTGCTACTGTTGACCACAAAGTCCTTAGACTTGAAATATGTAAGTACAGTTGGAATGAGGAAATACTTCATAGATACCACAAAAACCGAGAGGCCATTGAGCTTAACTGTGTGAAAAATGGAGACAAAGTATCTTGTAGGCAAATGGACAGTGAAGATTCTCTTGATGTATCTCCAAAAGAGATGGATCTGTGCCAGATATTAGAATTATTAGACCTTGAGAAGATGCAACATACTTTATCACTAAGTAGTGATCATGTGATAAATTCACCAAAATCACTAAtggaagacattttatttatgacaagagaaagtgaaaagaaTATTGCAGATTGCTATTGAAAATGAGTGCTCAAAAGTGGTAATCTTGTTGTGAGGCAGTACTCTTGACATTGTATCCTGATGGCTTTGTGTTGAACAGAGAAGCCTTTGTTTTATAACACTCATAAGTAACTTTAAATGTTAAGtttcatttacaaaatttaATATAGGGCTGTACTTTAAACTCAATTATGCTTGTACATAATTGCACATAACCCctgagcttctttttttttataactagCAACTTATAATGTCTCATGTCTTGAATGGAATGTGGATTGACTGTGGTTTTCCAATTAAATATGACTATTAAAAACTGTCGAAAGGGTGTAAGAAACATTCTTCTTAAATGGAAATGTAACTTGATACACATGATCTCTGTGGACCCCAAAGTAGTCATACtcatgttcttctttttttgtttgtttgtttgtttgtttttttttttttttttttttttggctattttcATGCTATTTGGCATTATCCAGTTCATCAATAAACATATGTGATGTCCCAa

Function

symbol description
brat1 Predicted to be involved in cellular response to DNA damage stimulus; positive regulation of protein phosphorylation; and response to ionizing radiation. Predicted to act upstream of or within cell population proliferation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human BRAT1 (BRCA1 associated ATM activator 1).

NR:

description
PREDICTED: BRCA1-associated ATM activator 1

GO: NA

KEGG:

id description
K23112 BRAT1; BRCA1-associated ATM activator 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932179.2 True 3077 mRNA 0.40 14 5069360 5112747
XM_026932180.2 False 3008 mRNA 0.40 14 5069360 5112747

Neighbor

gene id symbol gene type direction distance location
knstrn knstrn coding downstream 442119 4619201 ~ 4627241 (-)
cfap221 cfap221 coding downstream 450552 4596430 ~ 4618808 (-)
LOC117596183 NA coding downstream 544576 4524502 ~ 4524784 (-)
cnpy3 cnpy3,tnrc5,LOC102798477 coding downstream 551372 4511270 ~ 4517988 (-)
LOC113535753 LOC108258306,LOC108439384,LOC106595798 coding downstream 564621 4488149 ~ 4504739 (-)
LOC113537465 atp1a1a.1,LOC108258575,LOC108429870,LOC107653678,LOC107717912,LOC107718011,LOC107698904,LOC107555257 coding upstream 140946 5253693 ~ 5268198 (-)
LOC113537466 atp1a1a.4,LOC108258574,LOC108429869,LOC108429865,LOC108258576,LOC107717913 coding upstream 156763 5269510 ~ 5277092 (-)
LOC113537467 atp1a1a.4,LOC108258577,LOC108429867,LOC108429865,LOC108429869,LOC108258578,LOC108258576,LOC108429866,LOC107717913,LOC107653679 coding upstream 175938 5288685 ~ 5316195 (-)
LOC113537353 atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265 coding upstream 219173 5331920 ~ 5340521 (-)
urp2 LOC108258299 coding upstream 296864 5409611 ~ 5412773 (-)
G370706 NA non-coding downstream 6596 5062554 ~ 5062764 (-)
G370705 NA non-coding downstream 6924 5062144 ~ 5062436 (-)
G370702 NA non-coding downstream 10306 5058853 ~ 5059054 (-)
G370699 NA non-coding downstream 23114 5046040 ~ 5046246 (-)
G370663 NA non-coding downstream 155325 4896227 ~ 4914035 (-)
LOC117596137 NA non-coding upstream 6 5112753 ~ 5115118 (-)
G370711 NA non-coding upstream 22091 5134838 ~ 5135130 (-)
G370713 NA non-coding upstream 23460 5136207 ~ 5136693 (-)
G370784 NA non-coding upstream 77328 5190075 ~ 5190300 (-)
LOC113537335 NA non-coding upstream 77600 5190347 ~ 5191647 (-)
G370658 NA other downstream 179979 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 2216149 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 2494889 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 3236631 1824204 ~ 1832729 (-)
G369586 NA other downstream 3274136 1776319 ~ 1795224 (-)
LOC113537294 NA other upstream 276157 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 417245 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 829292 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 902979 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 1245892 6358639 ~ 6363203 (-)

Expression


Co-expression Network