LOC113537618 (LOC108258862,LOC108258860,LOC108258861,LOC108258859,LOC108429797,LOC108261765)


Basic Information

Item Value
gene id LOC113537618
gene name LOC108258862,LOC108258860,LOC108258861,LOC108258859,LOC108429797,LOC108261765
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6721328 ~ 6733356 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932210.2
gtgtgtgcatatgtatatatagaccCACATGAATCACTTCCAGGTTATTCATATCCTTTGTGAAATCAAGTTGCTGTACACAGCCAGATGATGGAGAGTGAACAAGGTACTTATGAAGACATTGCTTATAATGATGAAAACAGTAAGCCAATGGAGGGGGTCTTCCATAGCCATTTAGAGGAGAGAGTTCGGCCTTATATTGATCTGATTGACTCTTTGAGGCTGATTGGTGTTGAAGAAGATTTGGCTTTGCCAACTATAGCTGTAATTGGAGATCAGAGTTCTGGAAAAAGCTCTGTGCTGGAAGCACTATCTGGAGTGGCATTGCCCAGAGGGAGTGGTATTGTAACAAGGTGTCCACTGGAGCTAAAGCTGAGGAAGATTAAATGTGGTGTTCAATGGCAAGCCGTAATTTCTTACAAAGAACAGTTCATTGAGTTTGATGACCCAACACTGGTTGAGGGTTACGTTGAGGCAGCCCAGAATGAGCTGGCTGGAGAAGGCGTTGGAATTTGTGATGAACTCATCACTCTGGAGATCATGGCTCCTGATGTGTGTGACCTCACACTGATCGATCTCCCTGGGATTGCCCGAGTTCCTGTAAAAGGTCAACCTGAGGACATTGGACATCAAATCAAAAATCTCATACGGAAATATATAGAGAAGGATCAAACTATAAATTTGGTCGTAGTCCCATGTAATGTTGACATTGCAACAACAGAAGCTCTGAAAATGGCACAGGAAGTGGATCCTGAAGGAAAAAGGACATTGGCTATTCTTACAAAGCCAGACCTTATAGACAGGGGAACAGAGAAGAACGTATTGGATATAGTCCGAAATCAGGTCATTCCCTTAAGCAAAGGATATGTCATCGTCAAGTGCCGTGGCCAAAAGCAAATTGATGATAAGATCTCTCTGTCTGAGGCCACTCGAGTAGAGAGGGAATTCTTCAGACGTCATGAATTCTTCAGTTGCCTGTTGTATGAGGAGAAAGCAACTATTCAGTGTCTTGCCACCAAACTGACTCAAGACCTGGTTGATCACATCAAAaGATCATTACCTCTGATCTCAGAGGAGATAAAGAAGCAGCTGTGGATCTTGAGGAAAGAGCTAGGTCAGTGTGAACCTGGCCCACCACTGGACCCACAGAAGAGGAAAACCTTTTTTATTGACACCTTGACAAAATTTAATGATAAGATCAATCGCTTGGCATCTGGGGAAGTGGTCAACAATGACAACTTGTTTGTACTGCTTCGGTCTGAATTCAAAAAGTGGAAGGACCATCTTGACAACACAAAGGGATCATTTCACAAAACGGTCCAGGACGTGGTGAATGAATATGACCTGATGCACAGAGGACGTGAGCTGCCTGGTTTCAGTGACTACAAGGTGTTTGAGATGGTGGTGCAGAAGCTTGTGATCCAGCTAACAGGACCAGCCATTGACACACTCAGGGTCATCAGAGACACCATTCAGAAACAGTTTTCAGATGTTTCCAAAACCTGCTTCCTCAACTACCCTTTCCTCCAGTGTGTTGCAAcgAACAAGATAGACAACATTCAGTCAAAGCAGGAAGCCAAGGTGGAGCAGAGGATCATGGAGCAGTTTGAGATGGAGCAACTGGTCTACACTCAAGATGGCATCTACTTCAAGACTTTGAATGTGACTCACTCTGCTGAGGGACAAAAGGCTTCAGAAGACAACTTTGCTGGGTTTGACAACAGAAACAAATATCCTGAAATGCTGCAGGCTTACTATGAGATCGTGGTGCAGCGCTTGGCTGACCAGGTGCCCATGCTGATCCGATACTTCATGCTTAAGGAATCCGCTCAGCTGCTGTGCAGTGAGATGCTGGGTTTAATGGACGGTGCCAACGTGGCCGATGCCTTGCGTGAAGAGTCAGATGTCAGCAGACATCGGATTGACATGCAGAACCGCACAGACCGTCTTACCCTTGCTCAAGAGAAACTCAGCAACTTTGTTTGAAGCCAGGGGGCCACTGCATAGCActtgataaaatgataaaacactTTTATCATTTACTTTACAATAGACATGCCTGTGTTTGTActaacaaataattttatttattaaaaaggcATTGCTACACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932210.2 True 2111 mRNA 0.44 14 6721328 6733356

Neighbor

gene id symbol gene type direction distance location
cep97 cep97 coding downstream 6760 6703434 ~ 6714568 (-)
nfkbiz nfkbiz coding downstream 22297 6691664 ~ 6699031 (-)
eed eed coding downstream 45407 6668223 ~ 6675921 (-)
hikeshi hikeshi,ck073 coding downstream 55255 6660785 ~ 6666073 (-)
LOC113537292 ccdc81 coding downstream 61241 6641064 ~ 6660087 (-)
LOC113537509 LOC108258862,LOC108258860,LOC108258861,LOC108258859,LOC108429797,LOC108261765,LOC108258858,LOC108434714 coding upstream 9231 6742587 ~ 6770718 (-)
LOC117595692 LOC108258862,LOC108258860,LOC108258859,LOC108258861,LOC108429797,LOC108261765 coding upstream 38999 6772355 ~ 6779290 (-)
mxh si:dkeyp-110c12.3,LOC108258858,LOC108434714 coding upstream 57804 6791160 ~ 6796139 (-)
arhgap20 LOC108259036 coding upstream 102071 6835427 ~ 6862103 (-)
LOC113537750 fgf14,LOC108258297,LOC108434733,LOC105911936 coding upstream 224664 6958020 ~ 7025006 (-)
G371487 NA non-coding downstream 154383 6563849 ~ 6566945 (-)
G371454 NA non-coding downstream 185324 6529397 ~ 6536004 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 716538 6001838 ~ 6004790 (-)
G371135 NA non-coding downstream 719715 6001179 ~ 6001613 (-)
G371153 NA non-coding downstream 721854 5998848 ~ 5999474 (-)
G371595 NA non-coding upstream 75137 6808493 ~ 6815071 (-)
G371632 NA non-coding upstream 134388 6867744 ~ 6867960 (-)
G371625 NA non-coding upstream 146514 6879870 ~ 6881780 (-)
G371634 NA non-coding upstream 158410 6891766 ~ 6901343 (-)
G371787 NA non-coding upstream 418082 7151438 ~ 7153159 (-)
LOC113537742 LOC108258591 other downstream 358125 6358639 ~ 6363203 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 687935 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 769015 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 1174296 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 1326316 5388904 ~ 5395012 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 137210 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 325479 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 623915 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 984907 7718263 ~ 7724795 (-)
fam155a LOC108258331 other upstream 1178854 7912210 ~ 7993096 (-)

Expression


Co-expression Network