LOC113537623


Basic Information

Item Value
gene id LOC113537623
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5942039 ~ 5952313 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932220.2
ACATGTCTTCCTATCATGGTGACCTTCTTAACATGGTTTCCGGAAGCGTACGGTGATTTACTGGGCATGCGCACAAGCTTTGAAACACAACCGCGAAACCGTTGTTGTTTTGTACAAGATGAAGCCAGCTCGAGGTTCCTCCAGAGCATCAACGCAGGGTCCTAAAGGCGCAGGTCGAGATAGGAAAAGATTACAGCAAAAACCATTGTCTGATGGTGAAAGTGCACAAGATAAGCCAAGAAAGAAAGCACTTGCAGAGCCGAGAAAGGTGAAAGGTCAGGAAAAATGGAAACCATTGGCCAAGTCCTCCATCATGGTCCTCGACAACATGCTGAGTTTGTCAATACTATCTGTTCTCCcagtgaaaacaaaagaaaaagaggaattGCAGAAGCACCTTAACTCATTGAAAGACCAgTTTCTAGTTAAATGTTCTCAACTCCCTGTGCCGCCTCAGAAACATGGAAACATGATGCATGTGTCCCAGCAGTTCAACACAGAGAACAGGAAGGTTAAGCATGGCAAAAAGAAAATCAAGGAATTAGAGgaGACCAGCCAGGCGGTGGTTAGCGAACTGGAGCAGCTGCAGGTAAAGATGGACCGTTTGGAGCATGAGTGCAGGATCACAAGGGACAAACTGAAGGAAGAAGAGTTAAATGCACAGAAGTTTATTCAGCTGACTGAGCAAGCTGTTTTGCGCCTTCCTGCTTTACCACTTTATCCTGAAGATGAGCCCACATTACAGGAGAAGATCATGAAAGTAGTGCCCGATCCCAAAGCTGTCATGAAGGCTcttcagaaaagaaaagtaacCGGGAATGTAAAAGCCTTTTTGGAGTTGGCACATAAGCGGATGGATCACCTGTGACTCACCCTGTAACTCCAAACAACTGGATCAGTGttttctaatttctttttttaatgagcaaAAATTCCGTAACTCGAAGTGTAACTATTCTctgatttaaaacattgttGACTCAGTTATAAATTACCATCCTTGTTTATTACAATAAGatcataatatcataatacTTTAGATGTTAATCAAAATCAAATTATATTAACTTCAAAGTCACTGTTATAACACAAGCAAGTATATAAGCAAAAATAACATATCAACATTTATAGGGAACTGAATTTTCAGATTTTCCTTTTTCTAGTCCAGTGTAACTGATCAGTCAAATGATCAGCTTTGTATAAATACATGATTTCCTGAttgaaatgaatgtaaataaagtgacaTTGTTAATCTA
>XM_034300324.1
TAATTAAAGCGTAAATTACTGCGCGTGAGTTGGATAGTTACTTAGCATTCTGACTATGTTTAGCTAACTTTGTTTATAGCAAGCTAGCTAGATTTGGTTATTAAAGTCCTTATAAAAccacatacacatttaaagTTGTTGTTTTGTACAAGATGAAGCCAGCTCGAGGTTCCTCCAGAGCATCAACGCAGGGTCCTAAAGGCGCAGGTCGAGATAGGAAAAGATTACAGCAAAAACCATTGTCTGATGGTGAAAGTGCACAAGATAAGCCAAGAAAGAAAGCACTTGCAGAGCCGAGAAAGGTGAAAGGTCAGGAAAAATGGAAACCATTGGCCAAGTCCTCCATCATGGTCCTCGACAACATGCTGAGTTTGTCAATACTATCTGTTCTCCcagtgaaaacaaaagaaaaagaggaattGCAGAAGCACCTTAACTCATTGAAAGACCAgTTTCTAGTTAAATGTTCTCAACTCCCTGTGCCGCCTCAGAAACATGGAAACATGATGCATGTGTCCCAGCAGTTCAACACAGAGAACAGGAAGGTTAAGCATGGCAAAAAGAAAATCAAGGAATTAGAGgaGACCAGCCAGGCGGTGGTTAGCGAACTGGAGCAGCTGCAGGTAAAGATGGACCGTTTGGAGCATGAGTGCAGGATCACAAGGGACAAACTGAAGGAAGAAGAGTTAAATGCACAGAAGTTTATTCAGCTGACTGAGCAAGCTGTTTTGCGCCTTCCTGCTTTACCACTTTATCCTGAAGATGAGCCCACATTACAGGAGAAGATCATGAAAGTAGTGCCCGATCCCAAAGCTGTCATGAAGGCTcttcagaaaagaaaagtaacCGGGAATGTAAAAGCCTTTTTGGAGTTGGCACATAAGCGGATGGATCACCTGTGACTCACCCTGTAACTCCAAACAACTGGATCAGTGttttctaatttctttttttaatgagcaaAAATTCCGTAACTCGAAGTGTAACTATTCTctgatttaaaacattgttGACTCAGTTATAAATTACCATCCTTGTTTATTACAATAAGatcataatatcataatacTTTAGATGTTAATCAAAATCAAATTATATTAACTTCAAAGTCACTGTTATAACACAAGCAAGTATATAAGCAAAAATAACATATCAACATTTATAGGGAACTGAATTTTCAGATTTTCCTTTTTCTAGTCCAGTGTAACTGATCAGTCAAATGATCAGCTTTGTATAAATACATGATTTCCTGAttgaaatgaatgtaaataaagtgacaTTGTTAATCTA
>XR_003403780.2
ACATGTCTTCCTATCATGGTGACCTTCTTAACATGGTTTCCGGAAGCGTACGGTGATTTACTGGGCATGCGCACAAGCTTTGAAACACAACCGCGAAACCGTTGTTGTTTTGTACAAGATGAAGCCAGCTCGAGGTTCCTCCAGAGCATCAACGCAGGGTCCTAAAGGCGCAGGTCGAGATAGGAAAAGATTACAGCAAAAACCATTGTCTGATGGTGAAAGTGCACAAGATAAGCCAAGAAAGAAAGCACTTGCAGAGCCGAGAAAGGTGAAAGGTCAGGAAAAATGGAAACCATTGGCCAAGTCCTCCATCATGGTCCTCGACAACATGCTGAGTTTGTCAATACTATCTGTTCTCCcagtgaaaacaaaagaaaaagaggaattGCAGAAGCACCTTAACTCATTGAAAGACCAgTTTCTAGTTAAATGTTCTCAACTCCCTGTGCCGCCTCAGAAACATGGAAACATGATGCATGTGTCCCAGCAGTTCAACACAGAGAACAGGAAGGTTAAGCATGGCAAAAAGAAAATCAAGGAATTAGAGgaGACCAGCCAGGCGGTGGTTAGCGAACTGGAGCAGCTGCAGGTAAAGATGGACCGTTTGGAGCATGAGTGCAGGATCACAAGGGACAAACTGAAGGAAGAAGAGTTAAATGCACAGAAGgtgAGTCAGATGTTTAGAAGCTGCTGTGCTGTTCGTGTCTGCTCTAAAATTCACAGAGGAGCCATCTTTGCTTTTGAAATAAGACCAAAAGTTTATTCAGCTGACTGAGCAAGCTGTTTTGCGCCTTCCTGCTTTACCACTTTATCCTGAAGATGAGCCCACATTACAGGAGAAGATCATGAAAGTAGTGCCCGATCCCAAAGCTGTCATGAAGGCTcttcagaaaagaaaagtaacCGGGAATGTAAAAGCCTTTTTGGAGTTGGCACATAAGCGGATGGATCACCTGT

Function

GO: NA

KEGG:

id description
K11509 CENPQ; centromere protein Q

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932220.2 False 1256 mRNA 0.40 9 5942039 5952313
XM_034300324.1 True 1290 mRNA 0.38 9 5942039 5952113
XR_003403780.2 False 957 misc_RNA 0.45 10 5942429 5952313

Neighbor

gene id symbol gene type direction distance location
mrpl39 mrpl39 coding downstream 21840 5913959 ~ 5920199 (-)
jam2a jam2 coding downstream 33172 5896336 ~ 5908867 (-)
n6amt1 n6amt1,LOC107563652 coding downstream 345944 5589772 ~ 5596095 (-)
wu:fa56d06 LOC108258903 coding downstream 384949 5549553 ~ 5557090 (-)
urp2 LOC108258299 coding downstream 529266 5409611 ~ 5412773 (-)
mrpl16 mrpl16 coding upstream 11439 5963752 ~ 5969065 (-)
txnl4b txnl4b coding upstream 18727 5971040 ~ 5973439 (-)
blzf1 blzf1 coding upstream 24064 5976377 ~ 5983797 (-)
LOC113537602 tmem255b coding upstream 184194 6136507 ~ 6160962 (-)
cenpe cenpe,LOC107751066,LOC107573438 coding upstream 209801 6162114 ~ 6190394 (-)
G371121 NA non-coding downstream 46351 5892326 ~ 5895688 (-)
LOC117596178 NA non-coding downstream 50242 5886846 ~ 5891797 (-)
G371117 NA non-coding downstream 56427 5880476 ~ 5885612 (-)
LOC117596170 NA non-coding downstream 423659 5510716 ~ 5518380 (-)
G370942 NA non-coding downstream 433670 5508102 ~ 5508369 (-)
G371147 ercc5 non-coding upstream 41176 5993489 ~ 5994747 (-)
G371152 NA non-coding upstream 45690 5998003 ~ 5998159 (-)
G371153 NA non-coding upstream 46535 5998848 ~ 5999474 (-)
G371135 NA non-coding upstream 48866 6001179 ~ 6001613 (-)
G371134 mettl21c,LOC108429839 non-coding upstream 49525 6001838 ~ 6004790 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 395007 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 547027 5388904 ~ 5395012 (-)
G370658 NA other downstream 1052658 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 3088828 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 3367568 2566757 ~ 2574471 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 63413 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 406326 6358639 ~ 6363203 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 918253 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 1106522 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 1404958 7357271 ~ 7478509 (-)

Expression


Co-expression Network