lamp1a


Basic Information

Item Value
gene id lamp1a
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6279824 ~ 6292747 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932227.2
TGTAGGTGTATACAGTGAGCACAACTCTATAATCATCGAGCAATCCGAGGTGGTTGTAAAAGCTTGAACTGGATTGCTCTGTGTATAATATTTGGTTATGATACGCATGCGTTTTAGTGGTTTAACTGTGTTTTATTAACGCGTTAAAGAGGAAAAGTTGCTCGTGGCGGCGTGGCCACGTGACCGCTCTGGGCGACTCGCCTGACTCACATGACTGGAACATTCCCGGTGTTGATATTGAGGCGCATGAACGAGCAGCACTGCTGGGTAGACAGCTCGTGTGTTTTTCcatctgaaacaaacaaaagccaAGAGCTCGAGAGTGTAAGATCTCACAGCAGGCGATCAGCACTCTGTTAAAGATCAGTTAAAGACTGCACGCTTCTCTGGGCTACCGGGAGCAGCGCGTGACTCCGGGACGTGTTTACTGCTGTCACTGCTGCCAACAGCTTCATCTCTGCGCGTGCATTATTAActgtgcaaaacaaaaacatgacccACAGACTACTGGCAGGCATCGCCACTGGCTGCTTCTTTGTCTTAGGCTGGCTGACTGCAGCGCATGCCGTAATACTTGAAGTGAAGAATGGAAATTCGACCTGTATCAAAGCAGACATCTCAGCCAACTTCACCATCACATACCCCATCACCAATGGAacaAAAACTGTAGTTGTGCCGCTCCCGGGATCAGCAGTAGTGGGAAATGGCAGTTCCTGTGAAGGAGACTCTCCGGACCTGCTGGCCACCTTCGGTGATGGTCACTCTCTGGGCCTGGTGTTCTCCAACGATGGCCATAGATATCACGTGGCCAACCTTAGTCTGACCTACAACCTGAGTGACAGTGCCACCTTTCCTCAGTCCACCAGCAAGGATATTACGGTGTTGACTACAAACACCTCTCCGATCTCAGCACAGCTCAATACCACCTACAGGTGTTTGAGCCCCAGCTCAGTCAATCTGGGAGGCCCTGGAGTGACGATCACATTCTTCAACCTCCACATGCAGGCCTACATGCACAGCGCCAACCTGAGTACTAACGAGACTGTTTGTTCAGCTGATACTCCTACCACCACTGCTGCACCCACTACCACCCCTATCACCACAGCCACCCCCATCACCCCAACCAAACCTGAGCGCGGCAACTACAGCGTTGAAAACTCCACCGGCACGGCCTGTCTTCTGGCCAGAATGGGGCTGCAGCTGAATGTAACATACTTCTCCAAATCTCAGAATAAAACTATTGTGGTGATAACGAACGTGCAGCCCAATAAGACGCATATCTCTGGGTCATGTGAATCCACAAGTGCTACTCTGCTGCTGACTGGAGAGCTCGCCAACCTCAGCTTCGCATTCACATTGAACTCCACCACCAATAAATATCATCTCAGCACCTTGAATATGTCTGCCAGTTGGGAAGATATGTCAGAGCTATTCAGCGTCAGCAACAGCAGTCTACAGTACATGCAGGGAACCCTGGGCCGCTCCTACATGTGCAGTGTTGAGGAGGTTCTTCCTGTGGTCAGCACTTTCTCTCTAAACACCTTCGACCTGCAGGTGCAGCCCTTCGGCGTCCACAACAACGAGTTtggaccagccGACGAATGTCGAATGCAGAAGGACAGCATGCTGGTGCCCATCATTGTCGGTGCCTCCCTAGCCGGCCTCGTCCTCATAGTCCTCATAGCTTACTTGGTCGGCAGGAAGAGGAGTCACGCAGGCTACCAGACCATCTAAACCACTATTGTCTGTATAGGactatactgtgtgtgtgtgagtttgagtACTTCTTGTTTCCGGGTTGTTAAACCTTTATCTTCATTCACGCCTCTACTCTTGGAGTACATAAGAAAAAAGGCCACCTAAATATTACTACCGGCTCTGTTTCAccgactgactgactgactgactgattccgAGTGTTGAGATATAGATTTGCAGGGGTCACTTGTGACTCCTGTACAGTAGGTGGCAATGTAAACCTAAAATATGGGCCAGTAATTCCTCATTAAATACAGAGAGGAAGTGTTGCCACTCTGGTACCATGTTTCCATGTAATCCAATAAACCCTAAACCAATAAACCTCGCCTTGGGAGAATAAACCCTAACTCGAAATTTCCCtcctctgactaggaaaaaccaaagaaaatgccccctcaacttggaattcctattTGGAAAGTCaggaaggtctcctcaaccccagGTTTAGCATATGATGTCGTTAACTTGGTCGCTCACACcgtcaacagtaaataaaatgatcaatcAACACAGACACAGTAGTTGGTTACATCTCtaacactgaccatacagtttgctgttttgagaaagtaCATTAGCTGGttatcttattaaaaaaaaaaaaaagcaaacaaaaagtGCTGTCATGGCTGcatctgtgttttttccacGATTTGTAAGCTTGAATGTGATGTGCTTGAAAATTAGATAAAAATTTCTTCCTACTTCCAAATTAAATGCAGCGTAATATTTCGTATTCAGAAGCAGGCCACTGATTGGACAGTTGAGAAGCCTGATTACGGAGGGTGGAGGTGAATATCCAGCAAAAGGGTGTTTGTCTACAATTTTCGCAGGTTTCACTGATTTGCTGTGGTTGCCACGGTGATGTAAAAGCTTTCTGGAATATCGAATAAGAACATTCAGATGTAGCTGAGGAAAGCTTAGCTTTACTGGAATAcgaatggggaaaaataacgTTTCATCAGAAGTAGCTACATCCAAGTTGAAAGCTGATCATTGCCGGTGGAAGTTAACAGGCAGTGATGTATTGGGGTTACACACTGGCACTATTTATCTTGAGCATTATGCCATTACTGAGCGTTATTAATTATCAGTATCAGCCACCTTtgcacttagctagctagcttgcatGTTATCAACAGTGATGCCGCATTCAAATAGAGTAGAAGTCAAGAGAAGACTAGGCATGCTAGGCCACTGGGAAATTTGGATGCCAAGCATGAAAGCTAGCTAGTGACTTAAGCTAACACTTTGGCTAGCTAGTGTATAGCCGTTAAGGCTTTTATGCAGATAATGTAAAGGCAGAATGGCATtagaaacaagacaaaactgttgggaatatcaacattttcctcagctGTGTTGGTAAATCCATAAGAAAAGCTTCAGTATGATTAAAATTACAGAGTAGTTACACAGGATCAACCACAAGCTAAACTTAAGTAGTGAATAACAGAAGAATGGGCTGATACATGACCCCATTTGAATGTGGCATATGATACAAAAGACATCAGTTTCTAGCCTCCCATCAAAGATTTGCATAATTTGGAGGAACAGCTCACATTCTATATTAGTGACGTGTGAAAAATTCAATGGAAGTCTGGCAAAATTTAGCTTGCCTTATTTAATTAGATCCCGTTTAtcatttaattgtgttttattgatcATGGATGACCTCTTTGTACTAACATCTACTGACTTTTAAGAGGTCATTCGTAAATGGTTTTTATGTGTAATAAGTACTTGCATGGAACCTGTAAGTTTGTAAGTAACCATGTAAGTTATAAAATAGCTAAGAAGTTCCAAACATCGCTACTATGGAATTATCCAGCCTTCATGGCACAGATATTCAAGATTCAAGGCTGGGGATGTGGACTGACCTGAGCTCTGACCCACCACAATAAATTGGGAGAATTGTAAGACTTAACAGATTttgagagaacagaagaggagtTAGCACATGAGTGTGTCTTGGTGTGtatgacagagacagagagagagagagagactgatactgatactaGGCTTGAGGATAACGGCATCGAATGACAAAAGGCTTACAAGCTCAGGTTAAATAATTGATGCACTTGTCTCGTATTTTCTCCCAGTTAGGGAGCTTGAATTAGGGCTTGGATCTTATTCATGCTGTCTTTCTGTCGTTCTTTCTCACAGAGAAATTTAGCAAGTAAACGTTCTCAGGTTGGTGTAAGAACTTTACGCTGAAATTAATGTGAAAGCTCTCagcatgtttagaaaactgcaTCTTTTAAGCACATACTGACAGCAATTTGATATATTCAGTCATTGGTCTGTTTTGGTAACTATTAAAACACACCTCTTATGATTCACCATCTAGGACCCGTTTCACATTTTTAGGCATGACACACCAAAGACCAAAGACATCTTACTCAGTATCAGTGTGTATTTAGGCCTTGAATGGATTGGGTTAGTATGAACTCCTTTTTTACATCTAGATATATTCCactttgtttttgatttttctttttttaatggtagCCATTTTAACCTTTGTGTAGATTCCagtgaaaaagggaaaaaccATGATCATCTGTACAAACCTATTATTTTACTTTCTCACCCACTGATACTAATTAACGTCGTGACCTTTGACTCCGCATGCTACAGTTACTAGTCACTTTCTATAAGGTTCTAAAATTGAGGTTTTCTCAAAGCAAATTGAATAATGACTAAGCCACAGATGcagtttaatttgttttcatgttACAATATATGAAAACTGTACCGCTCCTGTAGCAGAACCTAACTGGAGATGCTTTTAAGGGGGAGAAGTTACGTAATGTGGGGTGTAGCAGCTGTCTGTGTAAAGAACATTGAGGACTCTGAAATTATCTTCAGGGATATAATCATTCTCTCGAGCACATAATGGAACCTTTCTTGGTGAAATACTGAACAGGACAAAAGTCAAAGAAAGTATCTAATTTCGGTGCATGTGTTTGCTTTGCAGTtccgatttttttttccccttcattgTATACTGTACAGCAGACTTTACgctttttcaaaaatgttgctTTGTCTAATCTCTTTTGGTTGATGGTTTGCTCATCTATAACTGCAGTGATCTgatcttttatttttgtagagaATATTTGTAATGTGTGGTGAGGCCAATAAATGAGGTGAACACTTTA

Function

NR:

description
PREDICTED: lysosome-associated membrane glycoprotein 1

GO: NA

KEGG:

id description
K06528 LAMP1_2, CD107; lysosomal-associated membrane protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932227.2 True 4934 mRNA 0.43 9 6279824 6292747

Neighbor

gene id symbol gene type direction distance location
tmco3 tmco3 coding downstream 41246 6226053 ~ 6238578 (-)
tfdp1b tfdp1 coding downstream 57269 6203697 ~ 6222555 (-)
grk1a grk1,grk1a,LOC107748333 coding downstream 79644 6191628 ~ 6200180 (-)
cenpe cenpe,LOC107751066,LOC107573438 coding downstream 89430 6162114 ~ 6190394 (-)
LOC113537602 tmem255b coding downstream 118862 6136507 ~ 6160962 (-)
cul4a cul4a,LOC102780633 coding upstream 2633 6295380 ~ 6317459 (-)
LOC117596162 LOC108258591 coding upstream 34030 6326777 ~ 6330275 (-)
LOC113537543 LOC108258588 coding upstream 71065 6363812 ~ 6380175 (-)
f7i fa7 coding upstream 79628 6372375 ~ 6378994 (-)
f7 LOC108258589,LOC108429788 coding upstream 87582 6380329 ~ 6384799 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 275034 6001838 ~ 6004790 (-)
G371135 NA non-coding downstream 278211 6001179 ~ 6001613 (-)
G371153 NA non-coding downstream 280350 5998848 ~ 5999474 (-)
G371152 NA non-coding downstream 281665 5998003 ~ 5998159 (-)
G371147 ercc5 non-coding downstream 285077 5993489 ~ 5994747 (-)
G371454 NA non-coding upstream 236650 6529397 ~ 6536004 (-)
G371487 NA non-coding upstream 271102 6563849 ~ 6566945 (-)
G371595 NA non-coding upstream 515746 6808493 ~ 6815071 (-)
G371632 NA non-coding upstream 574997 6867744 ~ 6867960 (-)
G371625 NA non-coding upstream 587123 6879870 ~ 6881780 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 246431 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 327511 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 732792 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 884812 5388904 ~ 5395012 (-)
G370658 NA other downstream 1390443 4843329 ~ 4889381 (-)
LOC113537742 LOC108258591 other upstream 65892 6358639 ~ 6363203 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 577819 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 766088 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 1064524 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 1425516 7718263 ~ 7724795 (-)

Expression


Co-expression Network