LOC113537638 (LOC108258487,LOC108258488)


Basic Information

Item Value
gene id LOC113537638
gene name LOC108258487,LOC108258488
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11374505 ~ 11379803 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932240.2
CAAGGCTCCGAGTAGAAAGCCAGAGTTTATCGCCTCCCCATGGTGGAAccttgaaattatttatttatttttttatcttttacaaATACATCACAGCTGTGTATATAGGTACATTTCATTAGTAAAATAGTAGCATGCGCGTGACCTGTATTTACGTAACGCTAAGTAACGTATGTAGTAAGTAATGTagggtttattatttattcgGACGTGATTTCTGGCGTTATGGTATGTTGGAAAACCcctgtaaaaaaatgaaattgaaagtGAACCTCCAGTCAGAGCTGAGTGAAGGGAAAGACGGGGGAAAACCTGTATTTAGACCGATAGCTGCGGAAATACATGCTGAAGAAATCGCTTAACTTCTAAACAACAGCGCTTTGAGTCTGAGGCGCCATTAAAAGCCGCTGTTTAATAGCGACACTTGAGCGGTTCATCCACAAGCTACAAGATGGCCAAAGTTTTGGTGGCTGCTCTTGCTCTTGTGTTGACGGATTTGGTGTTCGTCTATGTGCTGGACTTGCTGGGCAGCCGGTGGAGAGGTGAGGTGAGGAGTCTGGACGGTGGAGCTGACTTGCTGAGGCAGTGGACTGAGGCTGTGCTGCGATGCTCATTGCTCTGCTCACTCTTCTACTGGAGTGATGTGAGAGGGCCGCTGATGAAGCGCTGGATTTTGGCCCACTGTTTTCTCCCTCCTGTGTATGAAACAGGTCGCTTAACTGTGTTTGGCAGCTGGCCGCTGGAGAAGTTTGCTATGTGGCTGGTCGGCAGTGTGGCTGCTGCTTTGGGATGCCTGTTCTGGGAGACGCTCTTCGCAGAGTCTAACGGGGAAAGCAGCAGCAAAGAGAAGAAGCAGAGAGCTCGAGTGCTCTTCATGAGAGTGATCCACCTCTACAAACCTGACTACCTGTTTTTAATCGGGGCATCTGGCTTCCTAGCCTTAGCTGTCCTTTGTGAGATGTTTATTCCACTCTACACAGGAAAGTTGATCGATATCCTGCAGACTGAGTACAGCTGGAATGAATTTCTTTCAACAATAATCCTAATGACATGTTGCTCATTTGGAAGCTCTTTCAGCGCAGGCTGCCGAGGAGGTCTCTTCCTGTGTGCTATTGGCAGCTTTATTTGCCGAGTGAAGCATCAACTCTTCGGCTGCTTGCTTAAGCAGGAAATTGGCTTCTTTGAGACTATAAAGACAGGTGACATCACAAGCAGACTGTCCACAGACACCAATCTCATGGCCCGAGCTGTAGCCCTGAATGTGAACGTCCTACTGCGAACCATGATTAAGACCATGGGGATGCTGTACCTGATGTTTAGTCTCTCCTGGAAGCTCACTGTACTGATGCTGTTGGAGACGCCTTTGAATGGACTACTACAGAACATCTATGACACACACTACCAGAGACTCTCAAAGAAGGTGCAGGACTCCATAGCAAGAGCAAATGATGCTGCAGGAGAGGCTGTGTCAGGCATCAGGACAGTAAAGAGCTTTAACGCAAAGCAGAGTGAGAAGTGTCGCTATGATGAGCGGCTGATGGATACGCATAATATAAAGACTCAGCGGGATACAGTCAGAGCAGTGTACCTGCTGGTAAGAAGGCTCACAGAGTTGGGAGTGAAGGTGGCTATGTTATACTATGGTCGCCTGTTTGTGACATATGGACAGATGACCACGGGAAATCTAGTCTCATTCGTCCTGTACCAGACAAATCTTGCGCAGAATATTAGGACtttgatttatatatttggAGACATGCTGAACTCTGTGGGTGCCGCTGGGAAGGTGTTTGAGTACCTGGACCGCAAGCCTGAAGTGAGCACAGATGGGACCCTGGAGCCAGAGGAACTGAAGGGACACGTCAGCTTCCAGAACATTGCCTTCTCTTATCCAACACGTCCCGACCGCAATGTGCTGGAGGACTTCAGTTTGGAGCTGAAACCCGGTAAAATGACCGCCCTGGTAGGGATTTCCGGTGGTGGGAAAAGCACTTGTGTCAGCCTGCTGCAGAGGTTTTACCAGCCTCAGCAAGGACAGATCCTACTAGATGGGCAGCCTCTGCAGAACTACCAGCACAAATACCTGCACAGCAAGCTTGTTGCAGTGGGCCAGGAGCCTGTTCTCTTCGCCGGTACCATACGGGACAATATTGCTTACGGATTGCCAGACTGTTCACTCAAGAGAATTGAGGAGGCAGCACGCAAAGCCAATGCACATGAATTCATCTGCCAGTTACAGAAAGGTTATGACACAGATGTAGGTGAACGAGGAAGTCTTCTTGGTAGCAGTCAGAAGCAGCGCATTGCGATTGCCAGAGCTCTGATCAGAGAGCCGCAAGTTATATTACTGGATGAGATCACAAGCTTTCTGGATCCTAAGAGTGAACAAACgGTCCAACGAGCCCTGGCCAACTGCCCCAACCAGACCTTACTGGTGATTGCACACAGGCTGAAGACCATTGAGAAGGCGGACCAGATTATTGTGATTGACCAGGGGGTGATTGTGGAGCAAGGCAGTCATCAGGAACTTATGGAGAAGGAGGGACATTACTACAAACTGAAAGAGAAACTTTTTACTGAAAATAACTGTAACAACAATAGTACCAgttaatgtgaaagaaaaaaaaccccacaagtCTATTGAACTGTAAAAACCTGGCACCTCATCAGTTTAGAATACAACTGTAAGAATAATTGCAATGGACATTATTGACATTCTGCATCTTTTCATGTTTTCTAAGTAAGACTGTTGTTATTTGACCATTTGCaatattgtattataattttattattctgcCAAACTGGCCACTGTAAAAAGGAAAAGCTGTTGTAATGTGTTAAAAGTTGTAAAATATTGCTAATGACAGGACAAAGTTGGATTAACACCTCAAGAGacacacaaataattaaaactagATTTTACAATTTTCATGTTTCGGGATAACTTGTACTTAATAATTAGAAACTTTATCACAGAGTACAAAATAATCCAACTAGTGATGGCCTATAGACAGAAATGAGCTGTTTTTACTGTACACATgttgaatacataaataaata

Function

GO:

id name namespace
GO:0002591 positive regulation of antigen processing and presentation of peptide antigen via MHC class I biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0046686 response to cadmium ion biological_process
GO:0035672 oligopeptide transmembrane transport biological_process
GO:0001916 positive regulation of T cell mediated cytotoxicity biological_process
GO:0002481 antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent biological_process
GO:0002485 antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent biological_process
GO:0002489 antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0042825 TAP complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0046978 TAP1 binding molecular_function
GO:0046979 TAP2 binding molecular_function
GO:0046980 tapasin binding molecular_function
GO:0042288 MHC class I protein binding molecular_function
GO:0042605 peptide antigen binding molecular_function
GO:0015421 ATPase-coupled oligopeptide transmembrane transporter activity molecular_function

KEGG:

id description
K05654 ABCB3, TAP2; ATP-binding cassette, subfamily B (MDR/TAP), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932240.2 True 3060 mRNA 0.45 11 11374505 11379803

Neighbor

gene id symbol gene type direction distance location
LOC113537567 LOC108258496,LOC108428189 coding downstream 4450 11361426 ~ 11370055 (-)
si:ch211-239f4.1 evi5l,LOC108258486,LOC108428244,LOC107676895,LOC107718810,LOC107692153 coding downstream 22124 11312765 ~ 11352381 (-)
LOC113537574 LOC108258505,LOC108439141,LOC107376145,LOC106957017,LOC103468358,LOC106517844,LOC102204789,LOC106930820,LOC102799753,LOC101476653,LOC102083067 coding downstream 66019 11302783 ~ 11308486 (-)
emp1 emp1,LOC108258510,LOC107718756,LOC107692152,LOC107603024,LOC107676894 coding downstream 94377 11275262 ~ 11280128 (-)
si:ch211-243a20.3 NA coding downstream 116030 11247809 ~ 11258475 (-)
psmb9a psmb9-a,psmb9-b,psmb9a,LOC108258508,LOC108433730,LOC103024362 coding upstream 1109 11380912 ~ 11384271 (-)
psmb12 pb9la,lmp2/d,LOC108433731,LOC103024673,LOC106569959,LOC106588399 coding upstream 5833 11385636 ~ 11391202 (-)
LOC113537507 psmb8a,psmb8,LOC108258500,LOC108258501,LOC107694758,LOC107549856,LOC107554342 coding upstream 19819 11399622 ~ 11402573 (-)
psmb13a LOC108258499,LOC108433729,LOC103024985,LOC106569958,LOC107104818 coding upstream 24313 11404116 ~ 11410114 (-)
tspan34 NA coding upstream 54711 11434514 ~ 11446094 (-)
G374230 ddx39aa,ddx39ab,LOC100304672,LOC107603018,LOC107692155,LOC105901571 non-coding downstream 14084 11358843 ~ 11360421 (-)
G374198 grin2b,grin2bb,LOC108258482,LOC107603025,LOC107551907,LOC107676879 non-coding downstream 131668 11238241 ~ 11242837 (-)
G374196 LOC108258482,LOC107676879,LOC107551907,LOC107603025,LOC107692185 non-coding downstream 137074 11237062 ~ 11237431 (-)
G374111 NA non-coding downstream 226832 11147454 ~ 11147673 (-)
G374105 NA non-coding downstream 234694 11139183 ~ 11139811 (-)
G374370 NA non-coding upstream 214163 11593966 ~ 11594981 (-)
G374371 NA non-coding upstream 215389 11595192 ~ 11596239 (-)
G374442 NA non-coding upstream 289190 11668993 ~ 11669256 (-)
G374495 c26h3orf70 non-coding upstream 372771 11752574 ~ 11755115 (-)
G374657 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393 non-coding upstream 554731 11934534 ~ 11943075 (-)
lipt1 lipt1 other downstream 501949 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 939138 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 1455726 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 2763664 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 2942067 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 699088 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 1245248 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 1927910 13307713 ~ 13320530 (-)
G375428 NA other upstream 2059416 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 2592533 13972336 ~ 13980251 (-)

Expression


Co-expression Network