ccsapa (LOC108258518)


Basic Information

Item Value
gene id ccsapa
gene name LOC108258518
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15172738 ~ 15180828 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932275.2
TCTACTCTCGCGCATGCGCACTGTCAAGCAGCCAGGGCGCGACATTCTGCTTCTGCTGCTGATGGGACTGTAAATACTCCCTGACCTGCTTTTCCTACCTGTTCGCCTGATGCAAGAACTTCTGGAAACACCGACCTGCTTTCTGCAGGAATCCGCGAGGAAAATGTGAGGATGTGATGTGGAGTGGTGTGTCTTCATTCAGCTCTGATCTCGGAGTTTAAAGAGGCCAGAGAGGTGCTCACCGTCAAATCCAGCCCAAATGACGAGCCAACCCAGCAACGCGGCCACCAAGAAGATCCGCACGGAGTACATGAAGAAGTTCCGCGAGCCGAAATGGGAGACGTTCTCCAAATGCTACCAGGACTCGGTGAAGTACAGGCTGAGCCGCCGGCTGATGGAGCACACACACCGGCCGCTGTTCGGGGATGGCTGGGACAGTGGCTCAGACTCCAGCGGCAGGTCCAGCCCCAGGGTCAGAGGGGTGACAGAGTCCTCAAACCCGCATCCGTCCTCCTCCGAGAGTGCAGAGACGCCGCGTGTGAATGCGGAACAGGACACGGACACCGTGGAACACAACTCCCTTCCTGTAGAGAATGGATACCAGCATGTCACAGCTAACGGGCCTTCGGACctcacagtgagacagagacacagagctgCTCGGTCTGAACCCAGCTTCCCTCAGCGTGAACTCGACAGTGATGAGTCCACCGACTCCACGCTGAGAAAACCGACCCGAGCCAAGAGCCAGCCGCCGGCCAGCGCCACAGAGAGAACCTCCAACCGGGACAACAGACGCTCAAATATCCGCTATGACTGGGCTGAGAGGAGCATGGAGGCCAGGGAGAGGAGGAGGCTCAACATGAAAGGCTCAGCGTCCGCTGGAGAGATCCACCGGGCCGATGTCGGGGTCCAGACACGCCGTGACTCTGAAAAACGTGGAATGGCCTTAGAGCGTCGGAGAGCGAGATCGGCTGATCTGGAGAAGTTGCGACGGTCCGAGCTTTCGGCAGCGGACGATCGCTGGATTACTGAGTACATGCGCTGCTTCTCGGCCAGGCTGAGTTGTTTCAGCGAGAATGGACTGGACCATGATGAGACTAAAAGACTTCCATTATGCTTATAGCTTGAAACTCAGGACACATAATGGGATGTTTCTCAGTATGCGTTCTTGTATAATCTTGCGTCTCGACATCAACTTTCACTACCCAATTTCAGTTCCAACACagaagaatgtaaaaaaaacaagagcgCAAATACTCAGAAGAGTTCTTGATCCAGCCCTGACATCGATCCAACCCCAataagaatgaaatgaaagaccTTGAATGCGTCGTGACAACATAGCAATGGTGGACAAGATGATTCATAAGTGTAAGTTTTCTGttcctttattttaattaatcagtATGCAAAATTCTGGTTCAAACAGTTAGATGACAAATGGATACTACAGTCATGGATTTTGCTCATTTGCTACAAGTCCTGgttggctaagttagctagctagcaataacCTCATAAGGTATCTAAGCTTCCTGTGGCACGACTTGGAAGCCGCTAACACAATAGTCAATTACACAGCATGTCTCAAATGCTCTGTTCACATGAGAGAACAACTCGACAAGAACATTCTTCTAGGAAGTCCATTCTTCGCTAATATTCTTGAACTCGTGCAATGATTAGTTTCAAAATAACTCATGGTGATACTTTTAACGGGTTAGTACACTATTACGGGTTGCAGGCCCAGATCTCAAACCAGCATCAGGGAACATTTTAAGCTTTTGTTTGAGCAAAACGTAAACCTCCAGTCCTTTATTTCCATTAAATTTGAAAATCATGCTAAAGGAAAGtaagaaagaattaaaaaaggGATATTTAATGAACATCTTCTTCTActtattacaatgttttattacaatGATCATTCCtctgatcattttaaaagaatgtgACTAACATTGGGTTAATAATGTTACATATGCGTTATGCTGATTGGCTTACATTCATTAGTAGCCACATTTTAGGGCTAACCAGgaaactttaaaacagaaaattccaacattaaataatttcactattaagatttttattataattattgagTTTGTTGGTGGTTTGTTCACATGTCTAGTGCGTTCTGTATTGGTGGATTATTTGAATGCAAGACTAAGTATAACATTAAGTAGCTAGACATCGGAAGATTTGCTGCTAAATATCTGTGTGGACCAAAACGAGTTCTTCACTTTGTTGAATTTGTGTATTGATTTCATTTCCCACTGGACAGCTCTCAGCCTCTTGAGCTTGGTCAGGTTAAAGTTCTTGAATGTGATTTAGTTGTTTTGAATGATTTGAAACAGCATATGTTTGTTGTAATTTGTGTCTTTAGCCTTGAGTTTTATACACCAGCACCGTGAGTTTGTTGCTGTGATGCAGTGTTGAGTTGAACTGAATTGTGGAAAGAAATATGTATGACTTGAAATAtaggtttttaaatatatagatgtgtgtTGTGCTCTCGATAGACACATTCCACAGCTGTATCAGGGCGTAGCCAGCATACTGCAGGGGATGGGTGTTGTTTCCTCCAAATAGTGCACCTTTCTATTACTAGTTAGACAGTTTGGAACACTAGTTTATAGGCTAACTATCTAGCTATTAGTGTTaatattaagcatttttaaTCCTACGTCAACCAAAGTTCCAGAAGGAGATTGCAATTGATGGCCACTGCAGTCAGGAAATGTTACTTAGTTAACTATGTAACACAATGGATTGTtggtagtaacagtaatttAGTTAACATTCATTATTAGCAAGCTAACTATCAGTCAACAGCTAATAAACTGATGCAGAATTACCTGAAAACTGTAGCTGAAATAGGGATACCTCATGGCCTATtccatttttgttaaataaatctgaccacttaagctttctttttctttgcaaaaCGAAACTATACTCTAATTACGCaatacagtgtagtatagttaaagccatcacaatttggcacAAGATTATAGCAGGATCAGCTACTAATATGTAAACCAATGTTGAAAGCTGATGCTTAccacagtgtttagtgtttagccAAGCTGACTATGAACATAGTAGGACACTCGCATTGCTAGCAAAGCTATTATCTATCTTACTATTAACTACCTAGCGTAATTAACTATATTTTCCGTAATGAAATCGTaatgctgtaatgctgtaatgctGTTTTAATTCAGGTATCTTGGTAGTTAGATTTACAATTTGTCTTCTCATATgtacacaataaatatatattttaatccatCATGTTCTGAAGCTGCTTCTAGCCTGTTGATTGGAAATGAGGCACAACAGCTCGAGGTAGTTTCTAAGTTCTAATGAGACTAAAATCTTtcaaatttgtttttcactcGACAAACTGTTTGTCAGCTAGCTTATTTTGATTATAATTGTGATTATAATGTAATTGTAATGAGTAAAAGATGTAACATTAAAATTTTGAGCGAGTCTTCTCACAAAACGCAAATTTAAGCGTAATAACGCGTTCGACGGTTTACAGCATCAACTATATttcttacattaaaaaaaataaataacaatgtcACAATAGAAACTTCATTTCCATACTGTCTGGCAAAATtactcaggttttttttattcattaattttattttttgggcCACATCCTCTCTGCATGGCTACACTCCTGTAAATGGACTTTGTTCCTTCACAGATtcattatattgaaatattaattttatgtgTGATTGCAATGGAAATGACGGCGTATTCGATGGCAAGCCGATGATTTTGAATGTGTTCACCTCACACTGAACTTAATGTAGTGTTAGATGAAGTGATCACCAGCCACAATGGAGACAAAATGCAACAATATTGCCATAAAAAGCTAATTATTTTGCTTTCACTTGTCATTTACACTGTAATGTGTTACTGAGTCTGAGAAGTGATGCTATAATTACAAAGCTTTTGACagaccaacagcaacaacatacacacagttgAAGGGGTGGGCGATATAGCAAAAGAATCAATATTACGATactcaaat

Function

NR:

description
PREDICTED: centriole, cilia and spindle-associated protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932275.2 True 4069 mRNA 0.41 5 15172738 15180828

Neighbor

gene id symbol gene type direction distance location
dla LOC108258338,LOC103023774,LOC108438608,LOC107746130,LOC107703728,LOC107598533,LOC107700799,LOC107594356 coding downstream 29937 15136233 ~ 15142801 (-)
dcaf15 dcaf15,LOC106592097,LOC106594349 coding downstream 59445 15104177 ~ 15113293 (-)
rln3b rln3 coding downstream 95122 15074671 ~ 15077616 (-)
spast spast coding downstream 100393 15060921 ~ 15072345 (-)
LOC113537617 NA coding downstream 214537 14953561 ~ 14958201 (-)
acta1a acta1,LOC102689871,LOC108414322,LOC108430668,LOC103383882 coding upstream 805 15181633 ~ 15186072 (-)
nup133 nup133,LOC107700801,LOC107729904,LOC107746127,LOC106958119,LOC106908639,LOC107729676 coding upstream 10477 15191305 ~ 15208140 (-)
ndufaf5 ndufaf5,LOC107684300,LOC107583196,LOC107594415 coding upstream 56032 15236860 ~ 15243012 (-)
LOC113537336 NA coding upstream 69783 15250611 ~ 15258294 (-)
LOC113537242 NA coding upstream 81218 15262046 ~ 15272834 (-)
LOC117596121 NA non-coding downstream 14092 15158146 ~ 15158646 (-)
G376615 NA non-coding downstream 19618 15152892 ~ 15153120 (-)
G376613 NA non-coding downstream 24753 15147785 ~ 15147985 (-)
G376608 LOC108259073 non-coding downstream 40448 15132017 ~ 15132290 (-)
G376602 NA non-coding downstream 71726 15099016 ~ 15101012 (-)
G376671 jag1 non-coding upstream 216840 15397668 ~ 15401270 (-)
G376670 LOC107729604,LOC103360699,LOC104950577,LOC105910653 non-coding upstream 280306 15461134 ~ 15462622 (-)
G376755 NA non-coding upstream 367564 15548392 ~ 15549785 (-)
G376758 NA non-coding upstream 430794 15611622 ~ 15653021 (-)
G376763 NA non-coding upstream 493979 15674807 ~ 15679171 (-)
triobpa LOC108259073 other downstream 43482 15117512 ~ 15129256 (-)
akt3b akt3b,LOC108259077,LOC108438606,LOC107594289,LOC107703832,LOC107729704,LOC101071975 other downstream 211686 14910662 ~ 14961052 (-)
b3gnt2a LOC108259010 other downstream 423004 14740132 ~ 14749734 (-)
ifngr1 NA other downstream 460092 14697239 ~ 14712646 (-)
G376143 NA other downstream 488410 14682387 ~ 14684328 (-)
dpy30 dpy30,LOC107684266 other upstream 231596 15412424 ~ 15458205 (-)
G376956 NA other upstream 736800 15917628 ~ 15920553 (-)
khsrp khsrp other upstream 748925 15929753 ~ 15942730 (-)
vps54 vps54,LOC107709616 other upstream 783048 15963876 ~ 15984959 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other upstream 972091 16152919 ~ 16164370 (-)

Expression


Co-expression Network