nup133 (nup133,LOC107700801,LOC107729904,LOC107746127,LOC106958119,LOC106908639,LOC107729676)


Basic Information

Item Value
gene id nup133
gene name nup133,LOC107700801,LOC107729904,LOC107746127,LOC106958119,LOC106908639,LOC107729676
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15191305 ~ 15208140 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932290.2
GTGTATTCTCCGCGCCACCGTTCTTCTGAGCGTGACGTAAATCGTGCGCGCGTTTCCATCGATTTGTGCGCGCGCTACATGAACCCGACCAACCCATTACATGAGCCAGTGTAGTTTTAGATTTTCGGCGTTAAAAGGAGTTTTGTGGTTAGAAATAAGCGAGTGAATCAGGATGTTTACTCCCCGCGGAGCCTCAGGCTCGGGACGCCGGCACACGGCGAGGACCGGCGGCAGGAAGAGTGTCAACACGCCGTCAGGGCTGCTGTTCTCCCCGCGCAGAGCTCCCCTCACTCccagCCGAGCGACTCCCACGCGGGTGCAGAGCTGTGCCACGGTGGACTCGGACCATTTCGACGTGCAGACGTTCGGGTCGTCTCTACCTGTCAAAGTGATGGAGGCTCTGACCATGGCGGAAGTGGATGACCAGATCTCGGTGAAGGTGGAGGAATCAGGCTGGGCGTGGATGGTGTGTGGGGAGAGGCTGATCATTTGGAAGATCTGTCAGACTGCAGTAGCGAAGctgtctGTGTGTAAGGACCTGCAGTTATCCCCCAGTGAGTACGCCTACAGCGCTGATCTCATCTCCATCAGCTCATCATCTCCGCTGGAGTCAGCGTCGGTGCAGtcggtgtgtgtgttggccgTGTCTCCGGATGGTTTGGCCCGGTTCTGGCCCAGTCTGGCCCACGAGGGGACGTACACGGAGACGCACGCTGATCTGGGAGGACACCTGTGTAACTACGTGACCGCAGTCAGGGGAGGCAGCTTCATCGTGTCCTCGTACCGCGGGCAGCTGCTGCGGGTGGGCATGGAGGCTTCTGGAAGGCTCTATCAGCGGGCAGTGCAGCAGGGACACGGGATGCTGTCGGGGATCGGACGCCGCGTCTCCAGTCTGTTCGGCCTCCGCAGCCCTCCAGCCGACACAGCCGTGCACAGTGTGTTGTGGGTGCCGGATTCGGGATGCCTCTACACACTCAGTACGTGTGGGTTGAATAAGTGGGAGGTCGGGGACACCACGGAGGTTCAGGTCCTGAGCTGGAACGCCTGCCCGAGCCTCTCCGACAGCATCGCCGACGCCATCTGGggtTCGGAGAGTAACTACGCTGAGCTGAAGGCGGGAGTAAACGTGGCGTATCTGGACATGCAGCTCAGTCACGCTGGCTTGGTGGTGTTGGCTGCAGCATGGCATCCTGCTGATACTCCGTGTTTGGCGTATTTCTGCTTGGTCACGCTCCCAGACACCACGCTACCCGTGTCAGACGAACTCTCTGTAGAGGTCACTAAGTACAACCCGCCGTTTCAGagCGAGGAGGAGCTCCATAAGACGAGGCTGTTGTTGCCGCGGGTGAAAAGTCCTGCAGCGTATCTCTACAACGAGGAGCTGGTGTACACGTGCACCACCGGCGCCGGGCGCAGCGGGCTGCCAGAAGAGAAGCTGACCTTTAACGCCTCCGGTGACCGTATCCGTGGTGGAGGCGTGTGTGCCGACTTGCCAGTTTTCTTCTCCCAGATTAACGGCCTGGTTGCCGTGGTACCCAGAGAGAGCGCCTCCATCTTGCCAGAGACCATGGAGGATTCTCTGTGTACTTCACTGGCTGGGCCTGGCCCTGAGGGGACTCCACTGGAGACACCACCTAAAATGGACACGGTAGCACAAGAGGACAAAACAAAGCTGCTGAAACAAGCCTTCCTGGAGTTCTGCCGCAATCGTGTAATGGAGGCTCAGAAGATGACGGACGAGCTCTTCCCTGACGACGGAGAGGGCGGCGGGAGGGAGCTGGACGCGCTGGTGACTCAGATCGACCTGGACCTGGTGGATGATTATCCTGCGTCGGATCCTCGCTGGGCCGAGTCCGTGCCTGATGAGAACGCCGGCTTCACTCTGACCTCGCTGATTCTGCTGCACCAGCTGGAGGACAAAATGAAAGCTCACCACTGCTTCATGGACTTCCTGCTGCAGACCGGGGTCCTGGACCGGCTCACCTCGACGACAGTGCGCTCGTCTCCCATGGCGACTCGGATGTTGCTATGCGAACACGCGGAGAAGCTGTCGGCGGCCGTCGCGCTGAAGAACCACCACAGCAAGCAGCCGGAGCTGGTGAACGCCGCCGTCGTCGCCACGCTGAGGAAAACCGGTGCGAACGTGCCCTCCAGCCTCACGCCTGCTGACGTCTTCTTCAGAGAGGTGTCTCAGATCTCCTCGATCTTCGAGTCACTGCTGGATGAGGAGGAGAAGTGTCTGAAGGAGAACCCCGTGACCTCAGTGAAGTGGGCCGAAGTCGTCCTCAACGTCAACAACATCATCAAGGACATGCTCCAAGCAGCAGCGCAGTACAGAGAGACTAAAGCGTCCCTCTACAGAGCAGCAGAAAACGCCGCTCCCGAGCCGGAGTACATCCCATGGACAGCCTCGGGCGGAGTGGGCGGAGTTCGTACAGTCATCGCCCGGCAGCATGACGTGATCCTGCGCAGTGTGTATCCTCACGCTGACTCGGGACTCCGTAACGCTCTTAGCGAGCAGCTGGTGGCGCTGCTGGACTCGCTGCTCGGCGGTTACGTGGCTCAGCTCACCTCGCTGCGTCGCCCCGGGCAACAGGAGCGCTACGACGCCCTGGAGATGGAGTACACACAGCGCCGCGCCGAACTGCTCACACCGCTCCtggaGCTGGGTCAGTATCAGTGGGTGGCGGCTCTGGCCGAAAAGTACTGCGATTTTGACATCCTGGTGCAGATGTGCGAGCAGACGGACAATCAGACTCGCCTGCAGCACTACATGACTAAATTCGCTGACCAGaACTTTGCGGACTTCCTGTTCCGCTGGTACATGGAGAAGGGGAAGCGAGGGAAGCTGCTGTCTCAGCCCATCGCTCAGCATCAGCAGCTCGCCAGCTTCCTGCAGGCCCACGAACACCTGAGCTGGCTGCACCACATCCACGTGCAGGACTTCCAGAGTgccCACCACACTCTGTACAGCCAGGCCAACACAGAGACACGCTACTTCAGCAAGAAGAAAACTCTGCTAGCGCTGAGCAAACTCACGGCTCTGGCCTCAGACATGCCCGAGCCGCTGCAGCGCAAGCAGGTCAACGatattgTGGAGCAGGAGCGCTTCCTCCTTCATCAGGAGACTCTTCCCAAACAGCTGCTGGAGGACAAGCAGCAGAACCCAGACACCATGCCTCTACTGAGTGCCCATAACCTTattaatCTGTATATATGTGATGAAAACCGCGGCGCTGATGAGTATGACTTCAAGAAAGCCCTCGACTTGCTGGAATACATCGACAAGGAAGACGCTGTGGATATTACAGCTCTGAAGTGTGCGATTCTCAGCAAAGCCTTGAAGAAAGACTGGAAAGAGAATTGGTCAGCCTCAGACGGCAGTGATGATCCTCTGGAGGCAGCTAGAGACAGCATCTTTGTTAAAATTCTCCAGAAACTCATTCAGGAAGgCGTTCCTCTGCAGGAGTATCTGCCCGATGTGAAGGAGCTGCTGCAGGTAGACGAGTTGGAGGCTCTCAAATCTAAACCCTTCTTTGAGTTCTTACTGAGAGCCAACTACGAGCACTTCGTCCAGTCGCAGATCTGACCCAACGTTCCTGTCCTCTACTCTGCTCTACACTtttctactgtgtgtgttagactcTGTTCTCTCCAcgtgaggatttttttttttttttg

Function

symbol description
nup133 Predicted to be a structural constituent of nuclear pore. Predicted to be involved in poly(A)+ mRNA export from nucleus; protein import into nucleus; and transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery. Predicted to act upstream of or within mRNA transport and protein transport. Predicted to be located in kinetochore and nucleus. Predicted to be part of nuclear pore outer ring. Is expressed in several structures, including heart; integument; liver; nervous system; and pleuroperitoneal region. Used to study Galloway-Mowat syndrome 1. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome and nephrotic syndrome type 18. Orthologous to human NUP133 (nucleoporin 133).

NR:

description
PREDICTED: nuclear pore complex protein Nup133

GO: NA

KEGG:

id description
K14300 NUP133; nuclear pore complex protein Nup133

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932290.2 True 3681 mRNA 0.58 27 15191305 15208140

Neighbor

gene id symbol gene type direction distance location
acta1a acta1,LOC102689871,LOC108414322,LOC108430668,LOC103383882 coding downstream 5233 15181633 ~ 15186072 (-)
ccsapa LOC108258518 coding downstream 10477 15172738 ~ 15180828 (-)
dla LOC108258338,LOC103023774,LOC108438608,LOC107746130,LOC107703728,LOC107598533,LOC107700799,LOC107594356 coding downstream 48504 15136233 ~ 15142801 (-)
dcaf15 dcaf15,LOC106592097,LOC106594349 coding downstream 78012 15104177 ~ 15113293 (-)
rln3b rln3 coding downstream 113689 15074671 ~ 15077616 (-)
ndufaf5 ndufaf5,LOC107684300,LOC107583196,LOC107594415 coding upstream 28720 15236860 ~ 15243012 (-)
LOC113537336 NA coding upstream 42471 15250611 ~ 15258294 (-)
LOC113537242 NA coding upstream 53906 15262046 ~ 15272834 (-)
btbd3a btbd3,btbd3a,LOC107747408,LOC107594463,LOC107675618,LOC107583195,LOC103354797 coding upstream 77970 15286110 ~ 15291362 (-)
srd5a2a srd5a2 coding upstream 217104 15425244 ~ 15436260 (-)
LOC117596121 NA non-coding downstream 32659 15158146 ~ 15158646 (-)
G376615 NA non-coding downstream 38185 15152892 ~ 15153120 (-)
G376613 NA non-coding downstream 43320 15147785 ~ 15147985 (-)
G376608 LOC108259073 non-coding downstream 59015 15132017 ~ 15132290 (-)
G376602 NA non-coding downstream 90293 15099016 ~ 15101012 (-)
G376671 jag1 non-coding upstream 189528 15397668 ~ 15401270 (-)
G376670 LOC107729604,LOC103360699,LOC104950577,LOC105910653 non-coding upstream 252994 15461134 ~ 15462622 (-)
G376755 NA non-coding upstream 340252 15548392 ~ 15549785 (-)
G376758 NA non-coding upstream 403482 15611622 ~ 15653021 (-)
G376763 NA non-coding upstream 466667 15674807 ~ 15679171 (-)
triobpa LOC108259073 other downstream 62049 15117512 ~ 15129256 (-)
akt3b akt3b,LOC108259077,LOC108438606,LOC107594289,LOC107703832,LOC107729704,LOC101071975 other downstream 230253 14910662 ~ 14961052 (-)
b3gnt2a LOC108259010 other downstream 441571 14740132 ~ 14749734 (-)
ifngr1 NA other downstream 478659 14697239 ~ 14712646 (-)
G376143 NA other downstream 506977 14682387 ~ 14684328 (-)
dpy30 dpy30,LOC107684266 other upstream 204284 15412424 ~ 15458205 (-)
G376956 NA other upstream 709488 15917628 ~ 15920553 (-)
khsrp khsrp other upstream 721613 15929753 ~ 15942730 (-)
vps54 vps54,LOC107709616 other upstream 755736 15963876 ~ 15984959 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other upstream 944779 16152919 ~ 16164370 (-)

Expression


Co-expression Network