f7 (LOC108258589,LOC108429788)


Basic Information

Item Value
gene id f7
gene name LOC108258589,LOC108429788
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6380329 ~ 6384799 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932311.2
GTTTTTGGGTGGCCAGTCTCCAGACTTTGGACTCTTCAACTGTAGGGAACGGAAAGTCTTACAGAACGTCAGCCATTATCCAACATGCGACTCTTATTTCTGCTCTCTCTAGTAATGAGCTTATGTTGCTGCTACCCTGCTTCAGTGTTTATAAAGAGGAAGGTGGCTTATGGAGTCCTCACCCGTACTAAGCGGGCCAACTCTGGTTGGCTTGAGGAGCTGAAGATGGGTGATCTGGAGAGAGAGTGCATAGAGGAGAAATGCTCTTATGAGGAGGCCAGAGAGGTGTTTGAACACACGGAAGTAACGAATGAATTCTGGAAAAACTACAATGTTAAAAACCACTGCCTGACGAACCCATGCGAGAACAATGGTACCTGCACACAGATGAAACAATCCTACGCATGCCTGTGTCCAGCAGGTTTTCAGGGGCGTAACTGTGAGCATGtGATTAAAGATATTCCTGACTCTTGCCTTGATAAGAATGGGGGATGTGAACATTTTTGTGAGGAGGAAACAGGGAGACGCAACTGTTCCTGTGCAGAGGGGTACTTCCTTGGGACGGATGGACAAAGCTGTCTGACGCATgAGACATTTCCTTGTGGTAAAGTGCCACTTCTTAATGCCAACATGACTACAAAAAATGTGGAGCATGACCAACGGGCTCGAATAGTAGGAGGGACAGAATGTCCTAGAGGACATTGTCCATGGCAGgTCTTGCTAAAGTATGGTGAAAAGGGCTTCTGTGGTGGTGTGATCTATAAGCCTACATGGATCCTCACAGCCTCTCATTGTTTAGAAAAGCTTGCAGTCAAGTTTCTCAAGATAGTTGCAGGTGAGCATGACATTGATGTGAATGAAGGCTCGGAACAAACTATAGAAGTGGAAGAGATGATTATGCATCCCAATTACGTCTCAGCAACAGCAGATAATGACATTGCCCTTCTCCGTCTCCGCCGTCCCATCGTCTACAGTACGTACGCAGTTCCTGTGTGCCTCCCTCGCAAAGTAATGGCAGAACGAGAGCTGTGGAGAGTCCGCTTACACACCGTGAGTGGATGGGGACGACGCTCTGAGGGTGGTCCAACATCACGATTTCTCCGGAGGCTCAAAGTGCCCCGTATCCACACTCAGGACTGTCTTAGGGAAAGCAACGTCTCGCTAACCTTGAACATGTTCTGCGCTGGCTACTTCGAGGGCAAGGAGGACTCGTGTAAGGGGGACAGCGGTGGACCTCTCGTCACCTCTTTCAGGAACACCACATTTCTCCTGGGCATTGTGAGCTGGGGTAAAGGATGTGCTCGCCCAGGTCACTACGGCATATACACACGTGTGTCCAATTACCTAGAGTGGATCCACAAGCACACATCAGTTCTCAAGTCAAAAAATGAATGAGTGGTAGTGGGGTCAGTGGAAAGGATTGTCTAgtcaaatgtgtgtttttgtcaatATAAATTCACCAGTCTTACTGCTATAATAAAGGTTTATTACAGTAACTGCAACATAGGCTATAAGCAAGATGCACCCAGAAAACATTCTTACACTATCTGGTGCTGCTCGGTGCCTAACACATCTTACGTCACATggccttgatttatttttgtttacaataaGCTTGACAGAGTGGAGTTAAACATGACCAGATGTACAAAGTAGGTCACTCACAGCAAAATGGTGAATTACGCAATAATTTTCATCTTGTCACTTATTCCAACTTGCCGCATTTCAATACTACttaatctttctttctgttcctttctattttttttttataatatatgatTCACTTTTTTACAGCTATTTCACCTTCATCTCTGCTCTGTCTGTTAGCTTTGaaatatttgcaaataaaagAGAGTTGGTCTAACTAAA

Function

NR:

description
PREDICTED: coagulation factor VII-like

GO:

id name namespace
GO:0007596 blood coagulation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01320 F7; coagulation factor VII

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932311.2 True 1872 mRNA 0.45 9 6380329 6384799

Neighbor

gene id symbol gene type direction distance location
LOC113537543 LOC108258588 coding downstream 154 6363812 ~ 6380175 (-)
f7i fa7 coding downstream 1335 6372375 ~ 6378994 (-)
LOC117596162 LOC108258591 coding downstream 50054 6326777 ~ 6330275 (-)
cul4a cul4a,LOC102780633 coding downstream 62870 6295380 ~ 6317459 (-)
lamp1a NA coding downstream 87582 6279824 ~ 6292747 (-)
f7l LOC108258590 coding upstream 100 6384899 ~ 6392466 (-)
LOC113537540 LOC108258592,LOC108429813,LOC107739159,LOC107739162,LOC107751098,LOC107694465,LOC107570071 coding upstream 18463 6403262 ~ 6404088 (-)
LOC113537523 pou2f1 coding upstream 47210 6432009 ~ 6449919 (-)
dusp27 dusp27,LOC102309085 coding upstream 66776 6451575 ~ 6461551 (-)
LOC113537739 LOC108258596 coding upstream 83718 6468517 ~ 6500613 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 375539 6001838 ~ 6004790 (-)
G371135 NA non-coding downstream 378716 6001179 ~ 6001613 (-)
G371153 NA non-coding downstream 380855 5998848 ~ 5999474 (-)
G371152 NA non-coding downstream 382170 5998003 ~ 5998159 (-)
G371147 ercc5 non-coding downstream 385582 5993489 ~ 5994747 (-)
G371454 NA non-coding upstream 144598 6529397 ~ 6536004 (-)
G371487 NA non-coding upstream 179050 6563849 ~ 6566945 (-)
G371595 NA non-coding upstream 423694 6808493 ~ 6815071 (-)
G371632 NA non-coding upstream 482945 6867744 ~ 6867960 (-)
G371625 NA non-coding upstream 495071 6879870 ~ 6881780 (-)
LOC113537742 LOC108258591 other downstream 17126 6358639 ~ 6363203 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 346936 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 428016 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 833297 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 985317 5388904 ~ 5395012 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 485767 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 674036 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 972472 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 1333464 7718263 ~ 7724795 (-)
fam155a LOC108258331 other upstream 1527411 7912210 ~ 7993096 (-)

Expression


Co-expression Network