f7l (LOC108258590)


Basic Information

Item Value
gene id f7l
gene name LOC108258590
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6384899 ~ 6392466 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932313.2
atgggatgttcaacaaggacatataggtgtgatggtcaagtgtccataaacttttggagATAGTGTAGGCGGCCTTTTGCACTAAACAGGCTGTTTAGCTCTTTGATTTTCTGAGTTCTTCTCACATGACCTCGTATGTGTGACGAGCGTTTGGGAAGATGAGTGATCCTCTCTTGTGGTTTTAAGACTACAGCTACTACAAAAAAGaccTGATTGCACACTGAGTTTGCAGGCTGAACTTTGATCAAAACTGTTAGACCTGAAATGGAGTCGAGTCCATGCAGAATgaatctctttctcttcatctcatTGCTATGTATCCAAGACTGCTTTGGGGTTCCAGCAGCATCAGTGTTCCTGAATAGGTCTGAAGCTAACCAGATGCTTCTGCATCGGTATCGACGTGCCAACTCATTCCTGGAGGAGCTGAAATTAGGAAATCTGGAGAGGGAGTGTGTAGAAGAGAAATGCTCATACGAAGAGGCCAAGGAGATCTTTTCTGGGCCTGAACAATTGgatGAGTTCTGGAAGAAGTACACAGAGGTGGACCAATGTCAAACTGGCCCATGTGCAAACGGGGCCACTTGTGTCAGTCAGGACAACACTTATATCTGTATATGTCCACCTAGATTCCAGGGACGGAATTGCGACAAAGAAACACTTCCGCAGACTTTTTATGGCTGTCTCTATAAGAACGGAGGATGTGAGCACTTCTGCACAGAGGCTGCAGATTCGGTCCATCAATGTCACTGTGCTACTGACTACAGCTTAGCGGCTGACAACAGAAGCTGTGTGTCACAAGtaCCTTTTCCTTGTGGTAAACCGGTGGTGACAACTGTAGGCCCTAGGATTGTTAAAGGACAATTGTGCCCTAAAGGACAGTGTCCTTGGCAGGCATTACTTAAGCTTGagaatgtgtataaatgtggaGGAGTTATTCTAAACTATGAGTGGATTCTCACGGCAGCTCACTGTGTCTGGCAATACAACCCCTCCCAACTACTAGTGACAGTAGGTGAACACATAATTAATGTGAACGAGGGCACAGAGCAAACTAGAAGAGTGTCCAAAATATTAATCCATCCTCTCTACAACCACACATCCAATGATGCTGACATAGCACTTCTACATCTGCACAAGAACATATCGCTAGGCCCCTACGTGGTGCCCATCTGCCTTCCTCCAGCACAAGGCACATTTTCTCGCGTGCTAGGGGCAGTGCGCACCTCCGTCGTGAGCGGATGGGGACGGCTTTCTCAGCAAGGACCTCTGTCCTCCATTCTTCAGCGGCTAGAAGTGCCCCGGGTGCCACTCGAGAGGTGCCGAGCCCACTCAGGTCTGAGCCTGACCAACAATATGCTGTGTGCTGGCTTTAAGGAAGGAGGACGTGACGCCTGTCAAGGGGACAGCGGTGGGCCACTGGTCACCCACTACAACAACACATGGTTTTTGACCGGCATAGTGAGCTGGGGAAAAGGTTGTGCCCGCTCAGACATGTATGGTGTCTACACCCGTGTAGCAGTCTTTGTAGAGTGGATTATGAACACAATGGCTGCAGAATAAATTAAGGAAGACCAAAGAGCAACAtcttaaaatgtaatatcagaTGATTTGGTGTTGTATAGATCAATACAGACTGTACTGATATTTAGCTTCACTATAAAGCACTGTATTTCCCTATGTATATGATGAACAATGAATTACTATACCATTCAGTTTGTACAACCACTAATAAAATGAATGTTGCTATGTTG

Function

NR:

description
coagulation factor VII-like isoform X1

GO:

id name namespace
GO:0007596 blood coagulation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932313.2 True 1754 mRNA 0.46 11 6384899 6392466

Neighbor

gene id symbol gene type direction distance location
f7 LOC108258589,LOC108429788 coding downstream 100 6380329 ~ 6384799 (-)
LOC113537543 LOC108258588 coding downstream 4724 6363812 ~ 6380175 (-)
f7i fa7 coding downstream 5905 6372375 ~ 6378994 (-)
LOC117596162 LOC108258591 coding downstream 54624 6326777 ~ 6330275 (-)
cul4a cul4a,LOC102780633 coding downstream 67440 6295380 ~ 6317459 (-)
LOC113537540 LOC108258592,LOC108429813,LOC107739159,LOC107739162,LOC107751098,LOC107694465,LOC107570071 coding upstream 10796 6403262 ~ 6404088 (-)
LOC113537523 pou2f1 coding upstream 39543 6432009 ~ 6449919 (-)
dusp27 dusp27,LOC102309085 coding upstream 59109 6451575 ~ 6461551 (-)
LOC113537739 LOC108258596 coding upstream 76051 6468517 ~ 6500613 (-)
LOC113537384 prss23,LOC107570079,LOC106575973 coding upstream 214134 6606600 ~ 6610907 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 380109 6001838 ~ 6004790 (-)
G371135 NA non-coding downstream 383286 6001179 ~ 6001613 (-)
G371153 NA non-coding downstream 385425 5998848 ~ 5999474 (-)
G371152 NA non-coding downstream 386740 5998003 ~ 5998159 (-)
G371147 ercc5 non-coding downstream 390152 5993489 ~ 5994747 (-)
G371454 NA non-coding upstream 136931 6529397 ~ 6536004 (-)
G371487 NA non-coding upstream 171383 6563849 ~ 6566945 (-)
G371595 NA non-coding upstream 416027 6808493 ~ 6815071 (-)
G371632 NA non-coding upstream 475278 6867744 ~ 6867960 (-)
G371625 NA non-coding upstream 487404 6879870 ~ 6881780 (-)
LOC113537742 LOC108258591 other downstream 21696 6358639 ~ 6363203 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 351506 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 432586 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 837867 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 989887 5388904 ~ 5395012 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 478100 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 666369 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 964805 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 1325797 7718263 ~ 7724795 (-)
fam155a LOC108258331 other upstream 1519744 7912210 ~ 7993096 (-)

Expression


Co-expression Network