fam161a (fam161a)


Basic Information

Item Value
gene id fam161a
gene name fam161a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14880246 ~ 14888909 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932333.2
TGGGACGAAACAGGGCTtgtgtttgttgttattattattattattactatttattttattaatgaaaaaatggaCAGTTCTCATCGCGCTAACGTGCTCGTGACATCCTGTCTGAAAACACCGGTGGATCCGCACACTAAAGTCCCGCTGGCTTTATACGAGAGAGCGCGCGCTGCTCCGGTAATAACGGATGCAGAACAGctgGAGTCTGACTCTGAATTAGACCAGGGCAATGATGATGTTTGCCCTGATGTCAGCTGCCCACTGCCAATTACAGATCGCTGTAAAATGGGCAATCACATTGACCTGCGTGAGCTGTATTTTTCTAATGAGGAGTACTACCGCAAGCTGGAGCAGCTGAGGAGAGCCCACCTTCGCACCATGGCTGATCTCGAGCTCATGTACCTTAAGAAACTTGAGCTGAAGGGCACTGCACCGCTGAGCAACTATGACAGAGCCTGTCTGCTGCAGTGTCCTCAGACAAACAATATGACTGGAGGAAAACTGAAGAAGGCTCACTCAGCCCATGAGCTCAGAAGCAGCACCTACATGGATGAGGTGCGCAATGACCAAGGTGACCATATCgatcaaaatattacaaaagatCTTCTCAGCTCACCGAAAGAACACATCAAAAACATGTGGCAAGGTTTCCATGTTGACAAAATGTCTCCAAGTAAGCAGCAACCTTCCTCAGCGTCGCTAGAGAACCATCCAGGTGACCATAAAGCCATGGTGGAGCCAAACGCCATGGCCAGAGTTCAAAGGTCAAAAAAAGGAAAGCGGTCAAAAGAGGAAGGCTGGCGTCCACAGGTGACGGTGCCCAAGCCCTTCCAGATGACTCTGCGTGAGACGGAATACAAACACAAGGGGATCAGGTCTCGCACCGAAATCGAGCGGGAGAATGAGGAGCTGCGCCGGGAGCTAGAGGAGCTGACAGAGTGCCAGCGCAAGTTCCGAGCCACTGCGGTGCCTGCTCATGTGCGCCTGCCGCTATATGAGGAACTGAGAGAGCGAGATGAAGAACGCCGTCGGCAGGTACGGGCTGCAGAACAGCAGCGCCTCTTCGCTGCCCAGAGGCCATTTAGCTTTCTGGAGAGGGAGCATATCAAGAAACAGCAGAAGGAGCTTCAGATGCTCCTCTCCACTAAGGAGCAAGAGGAGTACAGGAGGCGGCCATTTCGTGCCAAACCTGTTCCCCATGCGGTTAAGGAGGCGGCTTTGGGTGAGCGCCAAAAAGAAGAGCAGCTCTACCGGGAAATCAAGAAAGAGATGCGGGCGACAGAGATGCTCCTGAGCGCCACCGAGCCACCCAGCATACTGGCCAAACGTCTCCGTGAGCGCAGTGAACAGAGAGAAGAGCAGTCTGCCAATAGCACCAACCACAGGAACAGAATCAGCTCCCAGGTGCCCGACTTTGACGCCAGCTATAGGCGCTTCCAGAAGCAGCTTACAAGCAAGCGGGAATGTCGACCTCTGACAGCTTGCGAACCCTTCAAGCTGTGCACAGCTAACATCAGCTCGTGTAAAGAGCGCCTCGCAGCCAATACTGAGGCAGAGAGGAGGAGCCAGAGTGCATCTAGGTGCCTGTTTGTTTCATGTTCACCTCGAACACCTTCGTCCTCTgtgtgttcatctctctctggaAGCCATGATTACCTACCTTCCAAAATTACTGATGCAGCCAAGAAACGTCAAGAGGCTGTTAGGAAAGTTCTCGAACAGAGGAAGAAGGCTGAGCAAGAGGAGGAGAAATGGAAGGAGCGTCAGAGGCAGAAGGAGAGGAAACTGCAAAAGCTGGTTGCCAAGCGTGCTCAGGCCAACGACCCACATGTGGCCCTGGCACAGATTTGCGAATCCAAACTCAAGGAGTTCAGGAAACAGGACCTGCAGAGGCGCAAGGAGTATCaagaggagatgagagaaaTTCAAGAGAGAGTGAAACAAAGACCTCTTTTACTAGAACGAGTAACACAGATGAATGCTAAGAAGGCAGCAGAGAAGCGCTACACTGAAGCTCTGCGTGCGTTTGGTCTCAACGAGGCCTTCGTCAACAGTAAAGCTCCCACAAGTGAACATGatcacactctctcaggtcgtTCGGTGATTCACACGCCTCTCACACACAGGAAGGACCAAACAGCTGATCATCTGGAGGACGCTGATTTTGAAGATTATATACCTGGCGAATATCCTGCTGATTATGAAGATTATGAACAAGACGTCGAGGACGTACTGATGGACAGGAAGAGCGAGAGACAGCAGGAGGATGAGGGAGAAAAACTAGACAAAGAAGGTGACACCAATGAGGACAGAGACAGCAATCGTTCCTATAAGGACGATCTGGATTTTGATGATTATGACGATAAGGATGGGGATGAAAGTGATGAAGGGTGTGGCGACAGGAGCCACAGTTGCCATAGCAACACAAGCAGGGTGAGTGATGACAGAAAAAGAAGTACAAGCCCTTTaagggatggagagatgaaaGAAGACGGGAAAAGCAGACATGGAAGTCAGGTGTCTGTGAGTGGTGaagaaacagaaggaaaagaaagaggagaagaaaagaatgaTGATAAGGACTGAAGAAGCACTTTCATTTGTGCCTCTTTGGCTCCTCTTGTGGAAATggttgggattttttttttgtgcagtatTTAT

Function

symbol description
fam161a Human ortholog(s) of this gene implicated in retinitis pigmentosa 28. Orthologous to human FAM161A (FAM161 centrosomal protein A).

NR:

description
protein FAM161A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932333.2 True 2664 mRNA 0.50 7 14880246 14888909

Neighbor

gene id symbol gene type direction distance location
xpo1a xpo1,LOC108258411,LOC107746076,LOC107729732,LOC107703835,LOC100380723,LOC106585804 coding downstream 1662 14854881 ~ 14878584 (-)
usp34 usp34,LOC107746122,LOC107729952 coding downstream 28293 14787119 ~ 14851953 (-)
commd1 commd1 coding downstream 120208 14751030 ~ 14760038 (-)
zgc:66455 NA coding downstream 142386 14732575 ~ 14737860 (-)
mast1a LOC108258536,LOC108441252,LOC100710771 coding downstream 238792 14586194 ~ 14641454 (-)
cct4 cct4,LOC107700877,LOC107594293 coding upstream 1313 14890222 ~ 14898142 (-)
LOC113537617 NA coding upstream 64652 14953561 ~ 14958201 (-)
spast spast coding upstream 172012 15060921 ~ 15072345 (-)
rln3b rln3 coding upstream 185762 15074671 ~ 15077616 (-)
dcaf15 dcaf15,LOC106592097,LOC106594349 coding upstream 215268 15104177 ~ 15113293 (-)
G376171 NA non-coding downstream 140439 14739369 ~ 14739807 (-)
G376127 taf5l non-coding downstream 218935 14657946 ~ 14661311 (-)
G376093 NA non-coding downstream 347562 14532367 ~ 14532684 (-)
G376055 NA non-coding downstream 413738 14462142 ~ 14466508 (-)
G376050 snrpb2 non-coding downstream 492371 14386338 ~ 14387875 (-)
G376364 NA non-coding upstream 146256 15035165 ~ 15035466 (-)
G376574 NA non-coding upstream 155803 15044712 ~ 15045359 (-)
G376602 NA non-coding upstream 210107 15099016 ~ 15101012 (-)
G376608 LOC108259073 non-coding upstream 243108 15132017 ~ 15132290 (-)
G376613 NA non-coding upstream 258876 15147785 ~ 15147985 (-)
b3gnt2a LOC108259010 other downstream 130512 14740132 ~ 14749734 (-)
ifngr1 NA other downstream 167600 14697239 ~ 14712646 (-)
G376143 NA other downstream 195918 14682387 ~ 14684328 (-)
meis1a meis1 other downstream 355730 14460283 ~ 14524516 (-)
dand5 LOC108258523 other downstream 603709 14274327 ~ 14276537 (-)
akt3b akt3b,LOC108259077,LOC108438606,LOC107594289,LOC107703832,LOC107729704,LOC101071975 other upstream 21753 14910662 ~ 14961052 (-)
triobpa LOC108259073 other upstream 228603 15117512 ~ 15129256 (-)
dpy30 dpy30,LOC107684266 other upstream 523515 15412424 ~ 15458205 (-)
G376956 NA other upstream 1028719 15917628 ~ 15920553 (-)
khsrp khsrp other upstream 1040844 15929753 ~ 15942730 (-)

Expression


Co-expression Network