pcdh8 (LOC108258318)


Basic Information

Item Value
gene id pcdh8
gene name LOC108258318
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7092802 ~ 7096706 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932363.2
CAGAACAAGGAACCTACATGCACGAGCTGTAAATGGTTTGTGACTAGTTTTAAGGATTACTTACTTCAATTCTTAGGCAGAGATGCAGATTAAAAAGCTGCTACTAAGTTTTAGCTTAGTTGTGATCTTTGCTGCATGGACAGTGAAAGGCACAACAACAAAGTATTACACGTATGAAGAAGACGCACCAGGAACCTTTATTGGAAATCTTTCAACGGATCTGAAGCTCAACCTGTCCGAAGACCCGCACACGAGCTTTCGGTTCATGCAAGAGGGCAACACTTCACTAATTCGCATGCGAAAAAGCGACGGGCTGCTGACGGTGGGAGCGCGCATTGACCGGGAGAGTCTGTGCGGCTCCTCCACGCAATGCATGATCACCGCAGACGTGGTGGTTTTCTCCAAGGAAAAATTCCACCTGATCCACGTCGAGATCCACGTGAGAGACATTAACGACCACGCTCCTGTGTTTCCACGTGGCGAGACCTGGCTCGAGATTTCAGAGAACGCCGCCGTGGACTCGCGCTTTTCCATAGAAGTCGCCACCGACCTGGATGTCGGAAACAATTACATCCAAAGTTATCAGCTCATCAACAGCAGTCATTTTGGCATTGAGGTAGGAACAGGTGAAGATGGCAAGAAGTTTGCTCAGCTTGTGCTTGCGCAGAAGCTTGACAGGGAGCTTGAAGATTCTTACACACTTCAGGTAATTGCAAGTGACGGCGGAAGTCCACCAAAGTCTGGAGCAGTGACTGTGCGCGTAAAAGTGTTGGACTCTAATGACAACAGTCCGCAGTTCGAGCACGACACGATTAGAGTCGAGCTGCACGAAGACGCACCTGTTGGCTTTCTTTTGCTCAGAGTTCAAGCATTCGACCCTGACCATGGAGAAAATGGGGACGTGCGCTACGATTTCGCAGAAGGCGAATCCGGCGAGATCAAAAGCACCTTCGATGTTGATCCTGTTAGTGGAGCTGTGACCTTAAAGTCTTCGGTCGACTTCGAAGCGAGAACATCTTACGAGCTGCACATAAGGGCGTACGATCTGGGCGCCAACTCGGTTCCTTCGACTTGCACGGTCACTGTCGAAATCGTGGACGTGAACGACAACGCACCAGAAGTCACGATCAAGCCGATGGCCTCGAGGAGCGGAGACATGGCGTACATCACGGAGGCGGCGGCGGTGGAAAGTTTCGTCGCGCTCGTGAGCGCCGCGGACAGAGACTCGGGCGCGAACGGCTACGTGCGCGTCAGTCTGCACGGGCACGCGCACTTCAGACTCCAGCAGGCGTACGGAGACACCCTCATGATCGTCACCACGTCTGTTCTGGACCGGGAGAAGATCCCTGAATACAACCTCACTGTCATAGCAGAAGATCTCGGCTCGCCACCATTTAAAACTTTCACCCAGTACACAATCAGAGTGAGTGATGAGAATGATAATGCTCCATCGTTCAGCAAACCCGTCTTCGAAATTTCAGTGATGGAAAACAAAGCAGCAGGATCCTACGTGGCTTCTTTGGTAGCTCGTGATCCTGATGAAGGAGCCAATGGCAAGGTGACGTACAAGCTTCTCGAAAATGAAGTTGAAGGAGTCCCGGTGAGTTCCTTCCTGTCAGTAGACTCAGCTACTGGGACTCTCTACACAGTGAGGCCTCTGGACTATGAGCATGTCAAGCAGATCGAAGTGGCCATCCAAGCAACAGACGGCGGCTCCCCGCCCCTCTCAAGCACGGCTCTGGTCAAGGTCAAGGTTGTGGATGAGAATGACAACACTCCCTTCTTTGTTCACCCCATCCTCATTAATGGCTCAGCAGACATTCCTTTACCATGCAACGCTCCTGCTGGTTACGTGGCCCTGAAACTAGAGGGCCGTGATAATGATGATGCAATGAACGCCGAGCTCTCCTATACCATTATGGAGGATGAGGCATTCCTGTTTGttgtaaatgaaaatacagGTGAGATGGCACTAAAGCATGACCTGGCACTTGTATTCGGAGACACGGTGCATGTCAGAGTGGCAGTAAGCGACCATGGCCGAACGCCTCTTTTCCACACAGCCTCAATCCGCTTTGTGGTTTCGGATGCCATGCCCTTAGAAGAACAAGTGGTGGTGGTTCTTGAGGCAAGTCAAAAACAGGATAAGCCTATTTTTGATGCTTCCTTCATCATCATTGGGCTTCTGGGTGCCGCTTGTGCTGTATTGCTGGTCGCCATTGTGGCTGTCGCGTTCTCACGCAGGAACTTCCAGAGGAATGTCAGCTCCATTAGCAAAATATCTGGGGGAAACTTCCGAAAAACTCAATTACCAACCGACAGCATTGACTCAACAGATTCCAACAGCCTCTCCGGAGGTAGTGTTACAGTCACTGAACAGATTTCATCTTCGAGGGATGAATCATCTTTCTCATTTGAAGATGAACAAAGCAGGGATTCTGACAGTAAGATGTTTCGACCTCTCCTCACTAAAGGTCATTTTGAGCCAGTTTCCCTTTGGCAAGGAGACAGATACACACTTCAGATGAGTGAAATCGGATCTGTCGATCAGACGAGCATGAGGGACAGTGGCAAAGGTGACAGCGACTCCAATGACAGTGACTCTGACAGCGGACAAGCCGGTCAAAAAATTGCTAACATTGGCCACCAGCGAGCTAGCAGTTCCTTGTACACTGCACCAATGGATGGAGCTGGAGCATGCAGAACCAGAGAGATTCCCACACACACTACCAGCACTCATGTGGGCAACAGTGGGTACACTGTAGCATATCGGACACTGGGCTACGGCCGCCATCCAGCTGCCGCCAACCAAGGACCATCCTTCAGAGACTACAGTTATAATGCAGTCTTCAGCCAAACCAAAGATTACCCACATGTCCCTGTGTTTCACAGGATGGGGACACAACCCCAGTATTACTATCAGCATCATGTGCACAGACAGTTAGACAAACAAGCTGTACCTCCCAGAGAGCCGATCACAGACATCATCAGCATGCCTGTAGCAtccttttaaaaagaaacaaaaaaacctcaatGATTTCGTCACAACACATGAACTTCACATTATGTTACTTGTTTAAAGATTCTGGGCTTAATTTGAACTTTAATTCGATcagtgctgtttttcttcagtccTGTAGTAGTCCTACTTTATTTCTGGtctttatttatacaatattGTAGTAAGATCAACACAGTAACTTAGTTCATTTGACATAGATTGTCATAGAAgctgttgtattattatttttatttgtgtaaataacTTATGTAAATAGTTGTAAGTAAAACATCTCGTATTTATTGACACCTTGTGTATATTCCTGTGtaattttgaataaatgaatgaaattaa

Function

NR:

description
PREDICTED: protocadherin-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932363.2 True 3355 mRNA 0.48 4 7092802 7096706

Neighbor

gene id symbol gene type direction distance location
LOC113537541 c26hxorf38 coding downstream 2272 7084926 ~ 7090530 (-)
si:ch211-91p5.3 NA coding downstream 9948 7069178 ~ 7082854 (-)
LOC113537750 fgf14,LOC108258297,LOC108434733,LOC105911936 coding downstream 67796 6958020 ~ 7025006 (-)
arhgap20 LOC108259036 coding downstream 230699 6835427 ~ 6862103 (-)
mxh si:dkeyp-110c12.3,LOC108258858,LOC108434714 coding downstream 296663 6791160 ~ 6796139 (-)
sugt1 sugt1,LOC104941757 coding upstream 59874 7156580 ~ 7181482 (-)
LOC113537349 LOC108258693 coding upstream 88096 7184802 ~ 7201325 (-)
ednrba ednrb,LOC108258323,LOC108434743,LOC107658690,LOC107566659,LOC105911940,LOC106600156,LOC105022329 coding upstream 121659 7218365 ~ 7226649 (-)
mid1 mid1,LOC103030906,LOC106575281,LOC106574413 coding upstream 157045 7253751 ~ 7302564 (-)
lig4 lig4,LOC108412030,LOC107654268 coding upstream 909666 8006372 ~ 8010233 (-)
G371634 NA non-coding downstream 191459 6891766 ~ 6901343 (-)
G371625 NA non-coding downstream 211022 6879870 ~ 6881780 (-)
G371632 NA non-coding downstream 224842 6867744 ~ 6867960 (-)
G371595 NA non-coding downstream 277731 6808493 ~ 6815071 (-)
G371487 NA non-coding downstream 525857 6563849 ~ 6566945 (-)
G371787 NA non-coding upstream 54732 7151438 ~ 7153159 (-)
G371793 NA non-coding upstream 86470 7183176 ~ 7183386 (-)
G371929 NA non-coding upstream 314275 7410981 ~ 7415018 (-)
G371964 NA non-coding upstream 371083 7467789 ~ 7468460 (-)
G371967 NA non-coding upstream 379197 7475903 ~ 7476105 (-)
LOC113537271 LOC108258282 other downstream 24271 7058835 ~ 7068531 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other downstream 182256 6870566 ~ 6910546 (-)
LOC113537742 LOC108258591 other downstream 729599 6358639 ~ 6363203 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 1059409 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 1140489 5942039 ~ 5952313 (-)
LOC113537388 arhgap6 other upstream 260565 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 621557 7718263 ~ 7724795 (-)
fam155a LOC108258331 other upstream 815504 7912210 ~ 7993096 (-)
cars2 cars2 other upstream 972696 8069402 ~ 8084539 (-)
LOC113537489 NA other upstream 1164729 8261435 ~ 8267272 (-)

Expression


Co-expression Network