arhgap20 (LOC108259036)


Basic Information

Item Value
gene id arhgap20
gene name LOC108259036
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6835427 ~ 6862103 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932365.2
ACTACCCTGACCAGGAGAAAGCGGTAACTGaaagtaagtgagtgagtgagtgaggttCTCCAACAGACCATGTCTTTTGAGGCCGACCTGTTGTTTGGAATGGAAGAAGTTGGCTTTAGGACCCAGGGGCGCGGCTCATGTGTACAGATCAATGGGCTGAGTGGAGCTGAATAAAAGTTGTTGCTGGATCCAGGCTGTTAGTACGCAGCGCAGGACGTCTGCCCCTTTCACTGGATATTACCGGTTCTGGACTATGGACATTACGCATTTCACGTTATCCATTTATTCCTGCCAGTATAAAATGACAGCGAGATGTGTTCAGAATTTGGGTTATGTGTTAATATGAGTGCGTTTTTCGTCGTGGGGTAACTGGCAACTTTGCGCACAGGGGTTCACTTGTCTTGGATCGGTCCAACCACCTGTAAGCGTCTGAATGGAAAGTATGTCACCGCAGCAGCACGTAAACATCAGCCAGAGCCGCTCTTCATCACTCACTGAGGAGACCAATATGTGCGCGCATCTGGATAACAAGCGGaGGACGAAGGCCCTGTCTTGTCGCAGGCAATCTGCTCCTTCCTTGGTCATCAGCAAAGCACTTACTAGATCCAGAACAATATCCAGGGATAACAGTCTCTCTCCAGTCAGCCCAGAGACATGCCTACTGGTACAATCATATCTTAATCCTTCAAGGATGTTTATTGGTCATGTATATGCCCAGCTGAAGACTGGTCTGCAGACCCAGGAGAGGCATATGTTCCTTTTCACTGACATCCTACTCATCAGCAAAGCCAAATCTTCAACCAACTTTAAGCTGAAGGCACAGACACGAGTTTGTGAGATGTGGACAGCAAACTGCATGGAAGAAGTGTGTGAGGGGAGTACATGTCTTGACAAAAGCTTTGTGATGGGTTGGCCGACTTGCAACTGTGTAGCCACTTTCAGCTCAGTTGAACAGAAGGATAGATGGCTTTCCCTTATAAAAAGTCGAAtaaaagaagagaaggagaaagataATCCAAAAACAATCCCCCTTAAAGTGCATGCCAAGGATATGGGGAACTTTTCATATAAAACCATTGCTGTGAGCAATACTGACAGTGCCAATGAAGTTATTCGTCTCGCACTGCAGCAGTTTGGGATTGTGGGTTCTGTGAAAGACTTCCAACTGTGGGTGAGTTCCAGAAAAGACAATGCTCCTTACCCTCTTATTGGTCATGAGTTTCCTTTCAGTATACAGATGAGCCACTTAAGAGAGCCTTTGGATGAAACTGGTGAAAAAACTGATGAAATTATTCCACCTGAAAGACAAATGGAGCTACTCTTTGAGCAGCTACAGTCGGACAGTCAGTGCCAATTCATCCTGAGGCCAAGTCGGGTCGCTGTGGGCCACTCTTTTGTTGTTGATCCAGACCAGAAGCCGTTCAAAAGACGGCGGTCACTCATCAACTGGGCTTTTTGGCGCGGCTCATCCAATCAACTGGATGATCCTCCTTTATCACCCCATCCATTCACAACTGATAGGCTCTTTGGCATGCCCCTCAGCATGGTATGCAAGGATAACAGCCTTCCTAAACCCATCATGgACATGCTAGTGTTTCTGTTCCAAGAGGGGCCATTCACAAGGGGAATTTTCCGGCGCTCTGCTGGGGCCAAAGCCTGCAGGGAGCTGAGAGACAAACTGGACTCAGGAATCCAGGTTGTTCCGATGAACCGACAGTCTATCTTTGTGATTGCTGCTGTACTGAAGGACTTCCTGCGCAGCATTCCAGGCAGCCTGCTGTTGTCAGATCTCTACGAGAAGTGGATGGCCACCATGGATTTATTTGATGAAGTAGAGGACAGTCAATTAAAGTCAATTCAGGGTTTGGTGATGTCTCTTCCTTCTGAGAACATCCTACTCCTAAAGCATGTTTTGGCTGTGCTATACAACATTCAGCTCCATGCCGAAGACAACCAGATGAATGCCTTCAACCTGGCCATATGCATTTCTCCCAGCATGCTCTGGTCCCCAGCTCCTAGCACCCCAGAGATGGAAGGAGAAGGTACTAAAAAGGTCTGTGAATTGGCACGGGTAATGATTGAAAATTGCATGGCAATAATGGGAGAAGATGTGACCACACTATTTGATGGTTTTCCTCAGCGCTGCACTCATGGATCAGATGTGTCCTCTTATCAGATGACCGATTCGTCCTATGACAGCCTTGAGAATGAGCTGAATGACGACTCTGGATCACTTTTCCAGCCCATGCAGAGATCACGAAGCAAGCCAGACAGCCGCAGTTATGACTCAGTCCTCACACTGAGTGACTGTGACCTGGATCAAACTGATACTGACCCAGACatcaccataaacacacaccttttaCTCCCATCACTAGCCTGCCCAGTAAAACCTTCTCCAGTGGTGAGTCCATCCACTCCTCACATGCGATCTCCTTGTAAGGAATCTTCTTTTCCTAAGGGTGTTCGTCAGCTGAGACGTTCTTCTGAGCCTGCCATTTGGAATTCGACTTCATCCTTAACCAGATACCTAGAATGTAGGGAACACAGAAAGGGCAGTTACGAATGTGTGACAAGTCAAGGCAGAAATGACGTAGATGTAGACCTTGAGGTTGATTTAAATACCTTGAGGCTGGAGAAGCAGTGTGATCCTAGTCAAAGGGATCAGAATGAGAGGAATGTCCCTCAGCAACTGAAAGAGCAACTGAAACCTTCACCTCTGCATCTAGATATCAGCTGCACAAATCTCTGCTCCCCTGGGGCTTCACCGATACATTCTTCAGTGAGCTCTCTGGACAGTGCTTCCTCTCAGCACTCTACTGACAACAAACATTTCCCTCATATAGTAGGTAGCTTCAAGGCATCAGCAAAATCTCCCAGGTTCCCTGGCACTTCTCCTGGTCCAACCATACCTTCTCCCAAGGAATACCAACCTAAAGATAAATTAGACTGGAGCCAGTTGAGGAGCAGTCATGGGCTACATCCAAATACCTGGCTTAAGAAAGACCACAGACTTTCCCTGTCTAAGGACAAAGGAGGCCTGGATGACAAGGACATTGGTGATCCACTCCTCCATTCTGAGAATTTCTCCAAGACAAGCCATAGCAAGGAGAGGAGTGCTCAGGAGCCATGTAGTCCACCTGCTAGAAAAAGATCTACCAGCCCTCTCTGCTCTGAAGAATGCTTGCTCGAAACACAGCATTGCAGGTCAGTTTACTCCCCTGCCTTGGAAAAAAAGCTAACAGTGAAAGAACTGAGAGAGATTCACAACCAGGCATGTTCACTGAGTAATCAAACCCCGGTACAAAAGTACTCTCAGAAAAGCACACCAGGAGGTAATACCAGCAGTTTTCCACAGTCTGTGTTCTATGGCCAAAGTGTTCGCCGCTTGGCCTTGTACAGAAAGAAATCTTACTCTCTTGTTCCTGTCGAGCAGAAGTCCCCTGTACCTCCTTCCCTTCAGCGCCGAGCATCTGAACCTGGAGAGAAATGTCTGGGGCTGGATAGGGAGACAGCAAAGAGTCTGGAGCTTATCCACAGGCAGGCTGTAGGAAAACAAGACACATATTCTAACCCCCATACTCATGGACCTAAAATATCTAACCTGGAGCAAGATGAAAAGTATAGTAAACCCCAGTGTGGCTTGTCTCCATCAGCCACAAAGGCTGTGAGGAACTACTTCTTTTGGCAAGGAGGTGAAGATACCCAAAGTAATCTAAAGAAGAGTCAGGAAGTGGCACTGGCTGTTGTCCATGGCAAGCGGGAGTGGATGAGGAGGTGCAGTGACACACAGCTAGAAGACTTTGAGAAAATGCTTTTTTCAGAGGAGTCTTACGTCTAAGTTCCTTGGTTCTAATGCAGTATTTCCCAAATTCAGTCCACGTATAGTTATCCCTGGTCTAAACACCTGATTCAGTATATTTGTTCATTGGTAAATGCATTTGGTGTTTtagataaataagaaaaataaactgtgCAGGATACTTTAGGACTAGATTAGGAAGACACAGCCCTaaatacagtcagctccagaatgaATGGTGCCATTGGTAAAGATGGGTATAAAGGGTTATGAAAAATTTggtctttgtggttaattagcttattCTCCCACtgaaaatatgacagaaatctaacatttaattgtatttatttttgataaaattttaaacccttaccaaaaatatatttctcaACAAAAGCACATGTCCTAATTATCAGCACCCCGAGAAATTCTTATCAAGGATTCTTAGGAAATCTTGAACAGTAatccatgacttcctgtttcattgGGGTATAAACATGAAGTGACTAAATTCCCTACGTCATGAGGAAAATTagagaatttataaatgaagTTAGAGAAAAGGGTGTTGGCCTTCATAAATCAGTCACTGGCTATTAAAATAGCTACATGCCTGTAATGCCCACATTAGAGCAATAATTAAGAAGTTTAAAACAACAGTGAACCTGTCTGGAAGAGAGGTCGAACCTGTCTAGAAGTATGTTCTTCTCATAAGCAGAGTGAGGAGGTTAGAGAGGCAAAAATGGAACACAGTTGGAGATTTGCAGAAGACAGCTGCATTTTGGAGTCACCAAGTCTCCAAATCTACAATTAGACGCCACCTCCATGCCAACAAACTGTTTAGAAGGCATGCCTGAAGAAAAActtttctttcatctaaccACAAAAGTAAGTGCCTGGGGTTTTTTTGGATGCTACTGGGACTTTGACTGGAACTTGTGTTCTAGGgtgagatgaaacaaaaatcctgaaaaaaaaaagtcttttggCAACAAATATTCAAGGTGGGTTTTGAGTAAAAATAAGGTTCCCCACTCTTAGGTATGATGGACGATCTGTGATGTTGAGGGGCTGTTTTTCATGGTAAGACCCTGAGAATCTTGTTAGGATACAGCATCACGAAAATCTGCCTGCCTCTCCCAGGAAGCTACAGCTGGGTCATGGATGAATCTTTCAGGAGGACAGTGATCTGAAGCATACATCTAAATCCACACAAAACTGGTTCAGTGACCAAAGAATCAAGCATTTGACCTGGCCATCCCAGTCCCCAGACCTAAATCCAATTGAAACCTGTGGGGTGAGCTGAAGTGGAAAGTCCACATGAGGGGCTCTAGGACCCTGGAGTATCTGACAAGATTCTGTATTGAGGAATGCGTTCATATCCCTTGCTATATATTCTCCATGGTTTATAGGAGATGACTTATTGCTGTTATGTTGGCAAAAGGTTGCACAGTTCAACAAGTGGAAGAACAAAATACAGGGGTGACAATAATTGTgatataggtttttttttttttttttttaagttcagaAGGGTTTTAATgacctttttttaaacccattttaaagggtgccaataattctggtcTGATTGTATTATTAAGGATTTGAAATATCTGATAGTGAATGTGGCCTGTTGTGTATGCTTACTTTTTCTATCATTCAGTAAATTAAATTCTTAACATTACTTTAAAGCTTTAACAGGGCTTAGTTAGAAGAAATTGTAATTTTCTGCTGCACttaatttgatttttgattATTATAATATCAATCCATGAAATGCAGTGAAGTGCAATGACACTAGGTGTATGTATAATCTTACCAATTAActaacttttaatttaaaagttgtggtatgtaaaataaatatatagactGTGTAAACATAGACAATAGAAAGGTGGAAAGACCTTAACTGATACTATGTAAAGTTCTTTAAAGGGAATTattaaatcaattaattaattaggttACAAAACTATTGGCTTAttaattttgatttaatatGTTTAGAAAGTATCAAATTATATcagattatattaaaataagtaaaatgctTGCTACTGCAAAGCATAAATACTTGTGAACAAAAACAGTGCAGATATGTAATTAGTTGTCAATAATGTGTAAGAAACGTTTTGTTCCTGGACACAAAAATGTTGACGCCTGAGGTTCCGCTTTGGTAGGTGTAAATAATCGGTAAAAATTGTACTGCTTTTTATTTGGTGTCAGTGAGAATATTCTTGCTTATTTAATAAGATTAAGACAGTGTGTCTTTATATGAATTTGCTACTGTATAGGTTTTCTTTCAACTATAAATAAGGCCAATTTATGTGCAGTAAGAGAATAGCACATCTGGAAGCCATGTTTCTATTCTGTAGAcatagtgtatatttttaagAATCTAAAGAGTAATGTCTTaagtatattttcttttctattaaGACATATgttcagatatattttttttcaattgacATTGCTGCCAATTCTTTATACTCATATTACCTTATGGCAGGAGTTCTCTCTTTGCAGTCAGGGATCCCtttaattgtgaaataaaatccaatGACCCCtacagtacagatttatttaatgaacataacccaactattcaaataataggctaattatttaaatatgttcaaTAATATTGTGGCTATTTtttggagccatagagctttttattcctgaaatttccactgacagaacacatgaGGTTcattttgacattatttatagccaAGACATTAGCTTTATTGAGGTTTGGTTAAACCTatttaattcaagtgaccagtcaaaccaACTGTAAGAACTcgataataaattaaatagctTTGAATTgcgatttccaccactgtaataaTATAAAGACACCACaaggctatgcttcacagagcTCACTTTGAGAACTGCTGCCTTTTAGGATGGTGATTATAGAGAATATGGTAGCAGACATAAAATACTGTACctctatatatgtgtatgtgtttatataattCCAATTGTGACTTAAGGCTCTTAATGCATTTTTGTACATGcctgtgctgctgctgtcttAAACTATTTGCTACTGCAAAA

Function

NR:

description
PREDICTED: rho GTPase-activating protein 20-like

GO: NA

KEGG:

id description
K20641 ARHGAP20; Rho GTPase-activating protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932365.2 True 6886 mRNA 0.41 15 6835427 6862103

Neighbor

gene id symbol gene type direction distance location
mxh si:dkeyp-110c12.3,LOC108258858,LOC108434714 coding downstream 39288 6791160 ~ 6796139 (-)
LOC117595692 LOC108258862,LOC108258860,LOC108258859,LOC108258861,LOC108429797,LOC108261765 coding downstream 56137 6772355 ~ 6779290 (-)
LOC113537509 LOC108258862,LOC108258860,LOC108258861,LOC108258859,LOC108429797,LOC108261765,LOC108258858,LOC108434714 coding downstream 64709 6742587 ~ 6770718 (-)
LOC113537618 LOC108258862,LOC108258860,LOC108258861,LOC108258859,LOC108429797,LOC108261765 coding downstream 102071 6721328 ~ 6733356 (-)
cep97 cep97 coding downstream 120859 6703434 ~ 6714568 (-)
LOC113537750 fgf14,LOC108258297,LOC108434733,LOC105911936 coding upstream 95917 6958020 ~ 7025006 (-)
si:ch211-91p5.3 NA coding upstream 207075 7069178 ~ 7082854 (-)
LOC113537541 c26hxorf38 coding upstream 222823 7084926 ~ 7090530 (-)
pcdh8 LOC108258318 coding upstream 230699 7092802 ~ 7096706 (-)
sugt1 sugt1,LOC104941757 coding upstream 294477 7156580 ~ 7181482 (-)
G371595 NA non-coding downstream 20356 6808493 ~ 6815071 (-)
G371487 NA non-coding downstream 268482 6563849 ~ 6566945 (-)
G371454 NA non-coding downstream 299423 6529397 ~ 6536004 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 830637 6001838 ~ 6004790 (-)
G371135 NA non-coding downstream 833814 6001179 ~ 6001613 (-)
G371632 NA non-coding upstream 5641 6867744 ~ 6867960 (-)
G371625 NA non-coding upstream 17767 6879870 ~ 6881780 (-)
G371634 NA non-coding upstream 29663 6891766 ~ 6901343 (-)
G371787 NA non-coding upstream 289335 7151438 ~ 7153159 (-)
G371793 NA non-coding upstream 321073 7183176 ~ 7183386 (-)
LOC113537742 LOC108258591 other downstream 472224 6358639 ~ 6363203 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 802034 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 883114 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 1288395 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 1440415 5388904 ~ 5395012 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 8463 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 196732 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 495168 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 856160 7718263 ~ 7724795 (-)
fam155a LOC108258331 other upstream 1050107 7912210 ~ 7993096 (-)

Expression


Co-expression Network