LOC113537751 (vangl1,LOC107588836,LOC107552384,LOC107739810)


Basic Information

Item Value
gene id LOC113537751
gene name vangl1,LOC107588836,LOC107552384,LOC107739810
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8355647 ~ 8415941 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932384.2
CACGGAGCACTGCCCCCGCTGTTATTCCTAACGTGGAGAGCCCATTCCGCCGCCGGGGCTTCCCAACCGGGCTCGATTTACTGCCCTACCTGGGGATTACTACACTCTAGTGTCGTCTGTACAGTATACGGCATAGACACGCGCACGTATCGGAATGCCACGCTTCGGTAAAGATTGATGTTTGATGGCTGGGAGCCTCCAGGCTCGTGTCCGAGATTGACACTCGACAGCGCACACTCTACACCAATCTCCTGAGTGAGTTCCACCTACTGCCAGATAAAAACGCCCACAAGCTCCTGCTACACCTGCCCACCGCCAAGCCGAGCAACATACAAAACGCCCTCAGCCAATCGCTGGGGCTGGAACACGTTACCATGGACACCGAGTCCACCTACTCCGGCTACTCGTACCACTCAGGCCGGTCGAGAGGATCCCACAGACATGGggaGCGCAGCAGAGAGCGACACAAGTCTCGCAGTAAAGACAGCAGTCGCTCGGAGAAGTCTGTCACCATCAATGCTCCTCCTGCAGAGCCCCTGTTGGGAGACCAGTCCATGCGAGGAGATGAAACACAGGATGACAACTGGGGTGAAACTACCACTGCGATCACAGGCACATCAGAGCACTCGCTCTCACAGGAGGACATTGTGCGCATTAGCAAAGACCTGGACGACAGCGTGGGTCTGGACTGTAAACGGTATTTAGCCGTCTCATTCTCTATTATCTTGAGTCTGCTGGTGCTCCTGACGCCACTCGCATTCCTCATCCTGCCGCGACTGCTCTGGCCCGAGAGGCTGCGTCCATGCGGCACGGCCTGTGAGGGCCTCTTCATCTCCGTAGCATTCAAGCTGCTTATTTTGTTGCTAGCCATGTGGGCGCTGTTTTTCCGGCCATCCAAGGCCACCATGCCACGCATCTTCATTTTCCGAGCCCTGCTGGCCATGCTGGCGTTCCTGCTCGTGCTCTCCTACTGGCTGTTCTATGGAGTGCGCATCTTGGACACACAGGATGAGGATTATCAGGGAATTGTGCAGTATGCCGTGTCCCTGGTGGACGCACTGCTCTTCATCCACTATTTGGCTATAGTGCTGCTGGAGCTGAGGCATCTGCAGTCCTGCTTTTCGCTCTGTGTCACACGCTCTACAGATGGAGAGACACGACATTACAACCTGGGACAGCTCAGCATCCAGAGAGCAGCTGTGGCAATTTTGGAGAACTACTACAGAGATTTCCCTGTACATAACCCAGCACTGCTCACAGCTTCCAAATCGCGTGCTGCCAAACACCTGGCTGGCCTCAAGGTCTACAATGTGGACGGTCCAGGAGGCAATAACGCTGCTGCAGCAGGAATCTCTCAGTCCCAGTCTCGCGCCATGATTGCTGCCGCCGCCCGCAGACGAGATTCCAGCCACAACGAGCTGTACTACGAGGAGGCTGAACATGAGAGACGTGTCCGTAAACGCAAGGCCAGACTGGTGGTGGCTGTGGAAGAGGCGTTCACACACATCCGGCGCGTACAGGAAGAGGAACAGAAGAAGTCTCCAGGAGACGTGATGGACCCGCGCGAGGCGGCACAGGCCATCTTCCCATCAATGGCACGAGCGCTGCAGAAATACCTGCGCACAACACGGCAGCAGCACTGCCACAGCATGGAGAGCATCCAGCAGCACCTGGCCTTCTGTATCACACACAACATGACACCAAAGGCATTTTTGGAGAGCTACCTGACCCCAGGCCCGACGCTGCAGTACGGCCGCGAGCGCTGGTTCGGCCGCCAGTGGACACTCATCAGCGAGGCGTCAGTGAACAGCGGCCTCAAAGATGGCACTGTCTTCCTGCTCAAGTGTGTAGACTTTAGCCTGGTGGTCACCACGAAAAAGATCCCCTATATCAGGCTGTCTGAGGAGTTCATCGACCCCAAATCACACAAGTTCGTCCTGCGGCTACAGTCGGAGACTTCAGTGTAGGCCAGTAGCTTGTGGTATTGTCTCTATTTACGGTCATTCACAaccaaatttttttctttggcttaaaaaaaaaatctcagttatTTGGGGGTTTTGCAGTTTTATTATGttgtctttttatatatataatatatacatataaatctGTATACCacatatttgaatatatttccttttattttttctttgctttgttgGTTGGTTTTTGTTTAAACTGAACGGACACATTGATGTTGGGTTGTGCACAAAGACACAAATACGATGAGGGATAACATGACACAAGACTCAAcattctacttcttcttcttaaaaGAGACAAtctagaaaaaagaagaagaataaatacACTCGTAAGAGCCCAGTGGACCACTAATAACGGTGGACAGACCGATTATAAAGCAAGACACATCCATTCTGCTGTTATTCTGCAGCTCTGACGGACCAGCTGCTGGCATCAGAGAACTCCCAGAATGCTCCTCTTTCCACTGCAGAATTTGGAGGTTCAAGtggcaacctttttttttctactgtaaGTGCAAACTAACTCTTGGTGCTCTTTAAAACACATTTGGTTTGTATTTCTGCTGATGATACACAACATAATCATGTTTTCcaatctttctttttcacatatGCACAATGTACAGATGTGAGGTGTTGGTGTGTATCTATTGGAGTGTATTCAGACAAGTTCCGTGTTCAGCTGGTCACAAAATATGATTATAGGTCATTTGATGAAA

Function

symbol description
vangl1 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in primary posterior lateral line primordium. Human ortholog(s) of this gene implicated in caudal regression syndrome and neural tube defect. Orthologous to human VANGL1 (VANGL planar cell polarity protein 1).

GO: NA

KEGG:

id description
K04510 VANGL; vang-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932384.2 True 2707 mRNA 0.51 9 8355647 8415941

Neighbor

gene id symbol gene type direction distance location
poglut1 poglut1 coding downstream 18779 8329650 ~ 8336868 (-)
gk gk,LOC108259045,LOC107700103,LOC107667651,LOC107742635 coding downstream 35804 8294879 ~ 8319843 (-)
zgc:64002 LOC108258972 coding downstream 64296 8289161 ~ 8291351 (-)
LOC113537479 tceanc coding downstream 133104 8218639 ~ 8222543 (-)
rab9a rab9a,LOC108434684,LOC105902834,LOC107654259,LOC107667663 coding downstream 137452 8212903 ~ 8218195 (-)
LOC113537664 zc3h12c,LOC108259022 coding upstream 113541 8529482 ~ 8554308 (-)
LOC113537579 NA coding upstream 140070 8556011 ~ 8569035 (-)
cracdlb LOC108259003 coding upstream 156330 8572271 ~ 8590418 (-)
col17a1a col17a1 coding upstream 224571 8640512 ~ 8669319 (-)
LOC113537765 NA coding upstream 278596 8694537 ~ 8697313 (-)
G372471 NA non-coding downstream 151423 8202768 ~ 8204224 (-)
G372307 NA non-coding downstream 339259 8016105 ~ 8016388 (-)
G372300 NA non-coding downstream 366449 7988950 ~ 7989198 (-)
G372288 NA non-coding downstream 378656 7976777 ~ 7976991 (-)
G372168 NA non-coding downstream 446095 7909124 ~ 7909552 (-)
G372522 NA non-coding upstream 12663 8428604 ~ 8444065 (-)
G372742 NA non-coding upstream 359091 8775032 ~ 8788141 (-)
LOC113537261 NA non-coding upstream 547644 8963585 ~ 8965621 (-)
G373288 NA non-coding upstream 1343800 9759741 ~ 9759949 (-)
G373292 neurl1,LOC107676877,LOC107746052 non-coding upstream 1347678 9763619 ~ 9764526 (-)
timmdc1 timmdc1 other downstream 26621 8320868 ~ 8329026 (-)
LOC113537489 NA other downstream 88375 8261435 ~ 8267272 (-)
cars2 cars2 other downstream 271108 8069402 ~ 8084539 (-)
fam155a LOC108258331 other downstream 362551 7912210 ~ 7993096 (-)
G372086 LOC108258915 other downstream 630852 7718263 ~ 7724795 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other upstream 13621 8429562 ~ 8432438 (-)
tsga10 LOC108258346 other upstream 175466 8591407 ~ 8610841 (-)
LOC117596103 LOC102201964,LOC102304430 other upstream 1462902 9878843 ~ 9918779 (-)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 2006211 10422152 ~ 10435367 (-)
lipt1 lipt1 other upstream 2455283 10871224 ~ 10872556 (-)

Expression


Co-expression Network