alg11 (alg11,LOC107556718,LOC107705036,LOC107588826)


Basic Information

Item Value
gene id alg11
gene name alg11,LOC107556718,LOC107705036,LOC107588826
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11546974 ~ 11552722 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932394.2
CCCGGAAGCGAATCCGGAAGTGTAAATGTTGTGTTGTCATTTCTTACGAAGATGTCTGGCCACGATCACTTGTCCATCTGTTTGTGCGATTTAATCAGATTGTTGTGGTCGCTGCTCTTGCCATGCTTCTACCTGTGTCTCATCCTGACGGGAGTGCTCTTCCTGTTCGTCGCGGGGATTCGCACTTGGCTTCAGTCCAGCAGGAAAGCGCGCAGAGCTCAAGATGGACGACCCGCTGTCGCCTTCTTCCACCCGTATTGTAATGCAGGAGGTGGAGGAGAGCGAGTGCTCTGGTGTGCCATTAGAGCCCTGCAGAACAGGTACACGGACGTGGATTTCGTTATTTACACAGGCGATCAGGGTGTTACGGGTGAGCAGATTGTGGATGGTGCTCGTCACCGCTTTAACATCCGCCTACCACGTCCAGTCCGCTTTATCTTCCTGAAACATCGGCTGTTGGTGGAGGCCAGTCTTTACCCCCACTTCACCCTGCTGGGCCAGAGCATCGGCTCACTTTTCTTGGGCTGGGAGGCACTCACGGCCTTTACGCCTGATCTCTACATCGACTCCATGGGCTACGCCTTTACGCTGCCTATCTTCCGTTACCTGGGTGGATGCAGAGCGGCAAGCTATGTGCACTACCCCACCATCAGCACAGACATGCTGTCAGTGGTTCGTGACAGAAACCCCAGGTTCAACAATGCAGACTACATCACTAATAACCCTATTCTGAGTGCCATTAAGGTGGTGTATTACTGCGCCTTTGCCCTGCTGTACGGTCTCGCCGGCTCCTGCAGTGACGTGATCATGGTCAACTCCACCTGGACCCTGGGTCACATCCTGGCACTGTGGCGTGCCCCGAACCGTACCAGTGTTGTCTACCCACCCTGCGACGTCCAGGCCTTCCTTGATATCCCCCTGGAAGAAGAAGAGAACAAAGACGGAGACAGGAAGTGCCACTCCATAGTGTCAGTGGCCCAGTTTCGACCAGAGAAGGACCACCGGCTGCAGGTCAGAGCCTTCCAGAAACTTCTGGACAGGCGTGGGGAGGAGCCTGGCAGGAGGGAGCTGGTGAAGCTGATGCTGATTGGTGGATGCCGGAATCAGGAAGATGAGGATAGGGTGCTGATGCTGAGGGGGCTGTGCCAGGAGCTGGGCGTGGCCGATAGGGTGGAGTTTAAGCTGAACATCCCGTTTGAGGAGCTGAAGAAGGAGTTAGTGGATGCTACAATCGGCCTGCACACCATGTGGAACGAACATTTTGGCATTGgTGTGGTTGAGTGCATGGCTGCTGGGACAGTGATCCTGGCCCACAGGTCTGGTGGTCCTAAGCTGGACATCGTGGTGCCATATGATAGTGGCGTCACAGGTTTCCTGGCTGATGATGAAGAAAGCTACGCTGATGCCATGGAGCGAATCCTCACCATGACCCCCACAGCAAGACTCGAGATCCGGCGTCGGGCACGTCAGTCTGTCAGCCGCTTCTCTGTTCAGGAGTTTGAGGCATCCTTCTTGGCAGCCATGGAGCCTCTGATGGGCACATTGGAGCGATGAAGTTTAGGGAAGATGGAGGATGTTCCATGTCTCATTCAGAGCACATTACGACTGACTTACTGTTAACAGACTGTTGTGCATTGTGCAGACATGTTCATGAGCGTTCATCATCCCCTGTGGATCGCCCCACCTGTGCTGCACAACATTCCCATGCATGTAAAATCCACATGGacgtttcttttgtttttcaggtcTTTAGAAAACTGAGATGCATTGTGGTTAAGAAGAGTGGTGTTTTCAGCTGAAAGAGTTAAAATACTACAAAAATGCTTCAATTTAATGTAGCATTGCACTTGACCTACCTAGCTTGCAAACCCTCTTTCGTAACTTGACCCTAAAAGATAAGCTGCCTTCATCTGATCAGTTCTCAACTGAGCCAAGAAACTGACCTCAAATAAGAGagggtaaaaaaaa

Function

symbol description
alg11 Predicted to enable GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity. Predicted to be involved in oligosaccharide-lipid intermediate biosynthetic process and protein N-linked glycosylation. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ip. Orthologous to human ALG11 (ALG11 alpha-1,2-mannosyltransferase).

NR:

description
GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase-like

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004377 GDP-Man molecular_function

KEGG:

id description
K03844 ALG11; alpha-1,2-mannosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932394.2 True 1968 mRNA 0.52 5 11546974 11552722

Neighbor

gene id symbol gene type direction distance location
spp2 spp2 coding downstream 3277 11539380 ~ 11543697 (-)
trnar-ucu_14 NA coding downstream 74003 11472880 ~ 11472971 (-)
pld6 pld6 coding downstream 75431 11467404 ~ 11471543 (-)
rab3da rab3da,LOC108258507,LOC108435977,LOC103040938,LOC107757002,LOC107747429,LOC107675349,LOC107569532 coding downstream 82352 11448379 ~ 11464622 (-)
tspan34 NA coding downstream 100880 11434514 ~ 11446094 (-)
march4l march4,LOC108258493,LOC106596293,LOC107567720,LOC107663921,LOC107722703,LOC107558390 coding upstream 114187 11666909 ~ 11690520 (-)
vps8 vps8,LOC107699090,LOC107719737 coding upstream 217124 11769846 ~ 11866324 (-)
igf2bp2b igf2bp2,LOC108435967,LOC107699092,LOC107704342,LOC107596519 coding upstream 338952 11891674 ~ 11937127 (-)
LOC117596169 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393,LOC107749880 coding upstream 388430 11941152 ~ 11943095 (-)
LOC113537469 LOC108258698,LOC108435966 coding upstream 393112 11945834 ~ 11953213 (-)
G374230 ddx39aa,ddx39ab,LOC100304672,LOC107603018,LOC107692155,LOC105901571 non-coding downstream 186553 11358843 ~ 11360421 (-)
G374198 grin2b,grin2bb,LOC108258482,LOC107603025,LOC107551907,LOC107676879 non-coding downstream 304137 11238241 ~ 11242837 (-)
G374196 LOC108258482,LOC107676879,LOC107551907,LOC107603025,LOC107692185 non-coding downstream 309543 11237062 ~ 11237431 (-)
G374111 NA non-coding downstream 399301 11147454 ~ 11147673 (-)
G374105 NA non-coding downstream 407163 11139183 ~ 11139811 (-)
G374370 NA non-coding upstream 41244 11593966 ~ 11594981 (-)
G374371 NA non-coding upstream 42470 11595192 ~ 11596239 (-)
G374442 NA non-coding upstream 116271 11668993 ~ 11669256 (-)
G374495 c26h3orf70 non-coding upstream 199852 11752574 ~ 11755115 (-)
G374657 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393 non-coding upstream 381812 11934534 ~ 11943075 (-)
lipt1 lipt1 other downstream 674418 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 1111607 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 1628195 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 2936133 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 3114536 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 526169 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 1072329 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 1754991 13307713 ~ 13320530 (-)
G375428 NA other upstream 1886497 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 2419614 13972336 ~ 13980251 (-)

Expression


Co-expression Network