sh3pxd2aa (sh3pxd2a)


Basic Information

Item Value
gene id sh3pxd2aa
gene name sh3pxd2a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 9807172 ~ 9823708 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299861.1
ATGGCACCAGCCTACAGATACACCAGTCTTAGCGAAGGATCACAGGGATACAAAGgctggtGGTTCGTCAGTACTGCAGAAGAACAAGGCTGGGTTCCTGCCACATATTTGGACGCTCAGACTGGCACTAGAGATGATCTGGACCTGGGTACATCTAGATCAGGAGaggTTACTAAGCGGCGCAAGGCCCATCTGAAGCGACTGGACCGGAGGTGGACACTAGGGGGCATAGTCAACCGCCAACAGAGTCGAgagGAGAAGTACATCACTGTGCAGCCCTACACCAGTCAGGGTAAGGACGAGATCGGGTTTGAGAAAGGAGTAACCGTGGAGGTCATTCAGAAGAACCTGGAGGGATGGTGGTATATCAGGTACTTGGGCAAGGAGGGCTGGGCCCCGGCTTCATACCTGAAGAAGCTGAAAGACGACCTGTCCCCAAGGAAGAAAACCCTGACTGGCCCCGTGGAGATCATTGGTAACATCATGGAGATCAGCAATCTGCTCAACAAGAAAGCGGTCAGCGAGAAGGATGTGCAGACGGATGGAGAGGCTACCACACCTGATCGTCACATCTCCAAGAGCGAGATCAGTCTTCCCATGCCATGTGCCCCTGAAGTAGACCAAGTTTCAGTGACAGCCAGCACTGCCCCAAAGGCAGGCTTGCAGTCTGCATGTAGTGCCACCCTACAAGACACTAAGCCAAAGGCAGAGCCGGGCTCGCCTGCTATAGCAAGAGTGGCGCCACACCGAGTGGAGATCGGTTTTGAAGCTATAGGATCTCCAAATCTCAGACAGAAACCTCCCCCTCGACGAGATACAAATCTGGGATTCCAGCTGCCAAAGCCTCCAGAGCCCCCTACTGTGGAAACAGAGTACTACACCATTGCAGAGTTTCAGTCCTGCATCTCAGATGGCATCAGCTTCCGTGGAGGACAAAAGGCTGATGTAATAGAGAAGAACTCTGGTGGCTGGTGGTACGTCCAGATCGGGGACATGGAGGGTTGGGCACCTTGTTCCTACATTGACAAGCGCAAGAAGCCTAACCTAAGCAGGAGAACTAGCACACTCACTCGCCCCAAAGTGCCACCCCCGGCACCACCTGTCAAAAAGCAGGACTCGGAGGACACATCTTGCCCCAGTGCTTCCGCCTCCAAAGCTCCAGAATCCCCCAGTAGGCCTGTATATGAGGAGCCGGAGTATGACATTCCTGCTATCGGATGTGATCTGGATGTGGACACAAGCATTATAAAAAAAGAGCCTCGTCCTGTGcttataaaaagcagtaaagcTGCTGCTGAAAGAATCGCTCAGGCTACAGGTAAAGCCTCACCTCTTTTTACTGTGAAGACCTCCCCCTTAAGGAATGAGCACTCAGTGGAAGAAGTCACCAGGGAGGAGGCAATTTATGAGAATGATGGTTTTAGATATTCCTCTGAAGACTTTGTCTCTGCCAGAGAATCTAGTGCTGTGGGTTCAGAATCCCCAAGAAGTCGTACTTTGGGCCGCAAACCCCTGGGGTCCTCATCTGGGGGCGGAAAATCTTTCAGGGACCCTCCAGATCTGCGAACTCAGTCACTAACCCGTGGTGAGAAGACCAGCCCAAGATTGTCTTCAGATGAATCTGGCCGAAATCCCAAAAGGGAGCCGGTTTTGCGCAAGGATGTGGAACTCCGGATTGGTCAAAGCCCCTCAACTCGTCCCAAACCAGTGGTCCGACCAAAGCCCCTATTGACCAAGTCTGAAACACAGAGCCCAGAGAGGATGGACATCAGCAGCTTGCGGCGGCAGTTGCGTCCTGCAGGAATTCGACATGGGATAGTCCGTGCACGTGGTGGAGAAGACTCTGAGACAGCATCAGTGGTGTCATCAGAGGATTCTGTGACCTCCCGAAGCACATCAGACCTCTCCAGCACCTATTCTAAGGGCAGCAGAGGGGACTCTGATTATGAGGTTGCCTTGTACCGTACTACAGATGCATATGAGCGGGCACAAGAATCTGAGCTCAGCTTTCCTGCTGGTGTGGAAGTGGAGGTACTGGAAAAGCAGGAGAGTGGCTGGTGGTATGTCCGCTGGGGTGTAGATGAGGGCTGGGTACCTACGTTCTACCTAGAGCCTATTAGGCAACCTTCAGATGCAGGTGTCTCAGAGTCTCATGATGGATCCCTGGCAGAGCTGAGCAACACCAGCAAGTCGAATAGCTTAGAAAAGAATGAGCAACGTGTCCAAGCTCTCAATAACCTAAATCAGCAGAATCTACGACGGGCAACAAATCCCAGCCCTCCTATTCCCAATAAGCCACCTGGTGGCTTTAGTAAGCCATCCCCCCAGCTCAACGGTTCAGGTGTACGAATGCGGAACGGCGTTCGTCAGGCAGCTGTGCGACCACAGTCAGTTTTTGTGTCCCCACCACAGCCTGTGAAGGACACCAATTTATACACAGGGTCCTTAAGGCGCAATGAATCACTAGGTGCCAGCGATCACATGAGGTCTAGTGGTGGTGTGCGCCGAAACTCCTCCTTCACTGCTGTGCGGCCACAGCCTGCTACTGATGTAAGGATGAGATCCGGAACCACCACAGTTGCACCAGCCGGAAGCTCTAGCCCCTTGATTGCCCAGAGAAATGGAATTCCAGTCTCTACAGTGAAGCCCAAACCCATAGAGAAGACGCATCTCATTCATAACAACCTACGGGAAGTCTATGTCTCCATTGCAGATTATCGTGGAGACGAGGAGACTATGGGCTTCCCTGAAGGCACCAGTCTGGAGGTTCTAGAAAAGAACCCTAATGGATGGTGGTACTGCCAGGTTCTAGATGGCCTACAAGGAAGGAAAGGCTGGGTGCCATCCAACTaccttgaaagaaagaaatagcaCCGACTCACCTCCCCAAAGAATGTtacttaaatttaaatgtacatttgctATCAAACTCTATGAGGGGGACTTTTTTGTATCAATATGAGACACTTTAGTGCTGGTTTACTTAAAATTACATAAGACTCTAAAGATGATCAGTTATGTGTAAGTGGAGTACGCAAGTAAGAAAATGCCATCAAGGAAAACTGGGCTATCCCAGTGTCTTAAGCATCATTGGAGGATAATGTCTCCATtttgaaagaagaagaacagaaatGGTTTTGATAGAATGGTAGATCCAGGCAAATGTTGAGAGAAATTTTATGCCAAATGGGTGCCTTTGTCCATCATTGACTGAATGTTAAATGGAATAATTTAAAACCAGTGAATCAGTCTAAGTACCAAACTTCAACTTGGTGCCATAGGCCTATGAGTGCAGAAATCAACCAAAACTATTTTTGCtacaaaattacagaaaaaaatagaaatggagAGATTTCagtaaaagaaacacacaaaatgagTGAGCACTCAAAAACAAGAATGTAAGACATCGGATAAGCAAATAACAAATGGTCTTTACCGTTGAGTGCATTTAAAGATTACATttgattttcatatttttaaacttttgttcagttttttaattgctttatcGTATCTTGTGCATTTTCATGTCTTCCTTAGAGATGTATTTCTGCTTTCTTGTGACATCCCTGCAACTCTATCGGCCTGGAAAAAGAAGTCCCTCAACGAGATACTTGTCATGTGATCTTTCGTTTGTTCTGATGTGTCTCTGGTGGGGGTTTTGTAATTGGCTTTACGTTTTTGGCTCTCCATTTTCCTTTACCCCTTTCCTTACCTATAAAGCCCAGCCGTCATGAATAAAGGTCACTGATTCATTAAAGAATAA

Function

symbol description
sh3pxd2a Predicted to enable superoxide-generating NADPH oxidase activator activity. Involved in osteoclast fusion and superoxide metabolic process. Located in podosome.

NR:

description
PREDICTED: SH3 and PX domain-containing protein 2A-like isoform X1

GO: NA

KEGG:

id description
K24032 SH3PXD2; SH3 and PX domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299861.1 True 3769 mRNA 0.48 9 9807172 9823708

Neighbor

gene id symbol gene type direction distance location
cfap58 cfap58 coding downstream 101346 9597014 ~ 9705826 (-)
sorcs3 LOC108258285,LOC108443686,LOC107746061,LOC107566138,LOC107684317,LOC105891017,LOC103472494,LOC106951909 coding downstream 259915 9306733 ~ 9547257 (-)
caly caly,LOC108258305,LOC108434710,LOC103039857,LOC105891014 coding downstream 959008 8835487 ~ 8848164 (-)
msx1b LOC108258334 coding downstream 1008924 8796367 ~ 8798248 (-)
taf5 taf5,LOC107583167,LOC107684290,LOC107676012 coding downstream 1054922 8743452 ~ 8752250 (-)
stn1 obfc1 coding upstream 96114 9919822 ~ 9927977 (-)
lrrc58a LOC108258943,LOC108428195,LOC107566531 coding upstream 107741 9931449 ~ 9937173 (-)
fstl1a LOC108258944,LOC108428196,LOC103028151,LOC106575075,LOC105019681 coding upstream 115588 9939296 ~ 9961370 (-)
gja8b gja8,cx44.1,LOC108258942,LOC107566539 coding upstream 144743 9968451 ~ 9970159 (-)
bcl9 bcl9,LOC107676875,LOC107746285 coding upstream 169993 9993701 ~ 10043255 (-)
G373303 neurl1,neurl1aa,LOC107676877,LOC107746293,LOC107746052 non-coding downstream 7262 9793369 ~ 9799910 (-)
G373316 NA non-coding downstream 14551 9792282 ~ 9792621 (-)
G373310 neurl1 non-coding downstream 20311 9785983 ~ 9786861 (-)
G373296 neurl1,LOC103384027 non-coding downstream 39690 9767039 ~ 9767482 (-)
G373292 neurl1,LOC107676877,LOC107746052 non-coding downstream 42646 9763619 ~ 9764526 (-)
G373317 NA non-coding upstream 1753 9825461 ~ 9825693 (-)
G373327 NA non-coding upstream 7899 9831607 ~ 9832325 (-)
G373398 NA non-coding upstream 138714 9962422 ~ 9964543 (-)
G373629 NA non-coding upstream 198829 10022537 ~ 10024885 (-)
G373649 NA non-coding upstream 260731 10084439 ~ 10084737 (-)
tsga10 LOC108258346 other downstream 1196331 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 1374734 8429562 ~ 8432438 (-)
timmdc1 timmdc1 other downstream 1478146 8320868 ~ 8329026 (-)
LOC113537489 NA other downstream 1539900 8261435 ~ 8267272 (-)
cars2 cars2 other downstream 1722633 8069402 ~ 8084539 (-)
LOC117596103 LOC102201964,LOC102304430 other upstream 55135 9878843 ~ 9918779 (-)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 598444 10422152 ~ 10435367 (-)
lipt1 lipt1 other upstream 1047516 10871224 ~ 10872556 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 2255183 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 2801343 12625051 ~ 12630403 (-)

Expression


Co-expression Network