cct4 (cct4,LOC107700877,LOC107594293)


Basic Information

Item Value
gene id cct4
gene name cct4,LOC107700877,LOC107594293
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14890222 ~ 14898142 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299864.1
CTTTGGTCGCAGCCGGTGGCTCTCTGGAAGGTTCTGTTGTAATTTAACGGAGACAGAACCGGAGCGAATCCGCGTCCATCCGAGCCGTTGGAGCGGTGTGCGGGTCAGCAAGGAGAGCCGACGTTTTCCTAAAACCTTGACAAGAATTAATTTGGTGGGATTtcgtaataataatactaaaataaagaTGCCCGAAGCCGCGATAGCAGTGCCGAAGGGTCCAAGCGGAGGCAAGAACAACGGAGGCGCTTATGTGGACCGGGACAAACCGGCCCAGATTCGGTTCAGCAACATCAGCGCTGGAAAAGCCGTCGCCGATGCCATCAGGACGAGTCTCGGCCCTAAAGGCATGGACAAAATGATCCAGGACGGGAAAGGAGACGTCACTATCACTAATGACGGAGCCACCATCCTGAATCAGATGCAGGTCCTGCATCCTGCTGCTAAAATGctggTAGAGCTGTCCAAGGCTCAGGACATCGAGGCTGGAGATGGCACTACATCTGTGGTGGTGATCGCTGGAGCTCTTTTGGACGCCTGTGCTAAGCTGCTGCagaaagGCATCCACCCGACCACCATCTCGGAGTCGTTCCAGAAGGCGGTGGATAAGGGCGTGGAGATCCTGACCTCCATCAGCCAGCCGGTGGAGCTGAGCGACCGTGAGACTCTGCTCAACAGCGCCACCACCTCGCTCTGCTCCAAAGTGGTGTCCCAGTACTCCAGCCTGCTCGCCCCGATGAGCGTGGACGCCGTCATGAGGGTCATCGACCCGGCAACCGCCACCAGCGTCGACCTCCGCGACATCAACATTGTCAAGAAGCTCGGTGGAACCATAGATGACTGTGAGCTGGTGGACGGTCTGGTTCTGACCCAGAAGGTGGTGAACAGCGGACTGTCCCGCGTAGAGAAGGCCAAGATCGGCCTGATCCAGTTCTGCCTGTCCCCTCCGAAGACTGATATGGATAACCAGATCGTGGTGTCGGATTACGCGCAGATGGACCGCGTGCTCCGCGAGGAGAGAGCTTACATCCTCAACCTGGTCAAACAGATTAAGAAAGCCGGCTGTAACGTCCTGCTCATCCAGAAATCCATCCTCAGAGATGCGCTGAGCGATCTTGCTCTTCATTTCCTGAACAAGATGAAGATCATGGTGGTGAAGGACATCGAGAGGGACGAGATTGAATTCATCTGCAAGACGATCGGCACCAAACCCATCGCCCACGTTGACCAGTTCACGGCGGAGATGCTGGGCTCGGCTGAGCTGGCAGAGGAGGTGAGCCTGGACGGCTCAGGAAAACTGGTCAAGatCACCGGTTGTGCCAATCCAGGTAAGACGGTGAGCATCGTGGTGCGCGGCTCCAACAAGCTGGTGATCGAGGAGGCTGAACGCTCCATCCACGATGCTCTCTGTGTCATCCGCTGCCTCGTCAAAAAAAGGGCTCTGATCGCAGGCGGCGGCTCTCCGGAGATCGAGCTGGCTCTGCGCTTGGCTGAGTACGCCCGCTCTCTGGGCGGCATGGAGGCGTACTGCGTGCGCGCCTACGCCGACGCCCTGGAGGTCATTCCCTCCACGCTGGCCGAGAACGCCGGTCTCAACCCCATCTCCACGGTAACCGAGCTGCGCAACAGACACGCTCAGGGTGAGACGACGGCCGGCATCAACGTGCGCAAGgGTGGTATCTCTAACATCTTGGAGGAACTGGTGGTCCAGCCCCTGCTGGTGTCCATCAGCGCCCTCACCCTCGCCACGGAAACAGTGCGCAGCATCCTGAAGATCGACGATGTCGTGAACACGcgataaggtgtgtgtgtgtgtgtgtgaagagagcaCTGATAGACTGAAGCACTGCTGCTGAAGGATGTGGGGACCTCGCCAAACACCTCGCCATGACCAACCGCTCATGAGCTGTCTGTAGATGTTACGTTGCGTaatttaataaacttttttttttggacacca
>XM_034299865.1
CTTTGGTCGCAGCCGGTGGCTCTCTGGAAGGTTCTGTTGTAATTTAACGGAGACAGAACCGGAGCGAATCCGCGTCCATCCGAGCCGTTGGAGCGGTGTGCGGGTCAGCAAGGAGAGCCGACGTTTTCCTAAAACCTTGACAAGAATTAATTTGGTGGGATTtcgtaataataatactaaaataaagaTGCCCGAAGCCGCGATAGCAGTGCCGAAGGGTCCAAGCGGAGGCAAGAACAACGGAGGCGCTTATGTGGACCGGGACAAACCGGCCCAGATTCGGTTCAGCAACATCAGCGCTGGAAAAGCCGTCGCCGATGCCATCAGGACGAGTCTCGGCCCTAAAGGCATGGACAAAATGATCCAGGACGGGAAAGGAGACGTCACTATCACTAATGACGGAGCCACCATCCTGAATCAGATGCAGGTCCTGCATCCTGCTGCTAAAATGctggTAGAGCTGTCCAAGGCTCAGGACATCGAGGCTGGAGATGGCACTACATCTGTGGTGGTGATCGCTGGAGCTCTTTTGGACGCCTGTGCTAAGCTGCTGCagaaagGCATCCACCCGACCACCATCTCGGAGTCGTTCCAGAAGGCGGTGGATAAGGGCGTGGAGATCCTGACCTCCATCAGCCAGCCGGTGGAGCTGAGCGACCGTGAGACTCTGCTCAACAGCGCCACCACCTCGCTCTGCTCCAAAGTGGTGTCCCAGTACTCCAGCCTGCTCGCCCCGATGAGCGTGGACGCCGTCATGAGGGTCATCGACCCGGCAACCGCCACCAGCGTCGACCTCCGCGACATCAACATTGTCAAGAAGCTCGGTGGAACCATAGATGACTGTGAGCTGGTGGACGGTCTGGTTCTGACCCAGAAGGTGGTGAACAGCGGACTGTCCCGCGTAGAGAAGGCCAAGATCGGCCTGATCCAGTTCTGCCTGTCCCCTCCGAAGACTGATATGGATAACCAGATCGTGGTGTCGGATTACGCGCAGATGGACCGCGTGCTCCGCGAGGAGAGAGCTTACATCCTCAACCTGGTCAAACAGATTAAGAAAGCCGGCTGTAACGTCCTGCTCATCCAGAAATCCATCCTCAGAGATGCGCTGAGCGATCTTGCTCTTCATTTCCTGAACAAGATGAAGATCATGGTGGTGAAGGACATCGAGAGGGACGAGATTGAATTCATCTGCAAGACGATCGGCACCAAACCCATCGCCCACGTTGACCAGTTCACGGCGGAGATGCTGGGCTCGGCTGAGCTGGCAGAGGAGGTGAGCCTGGACGGCTCAGGAAAACTGGTCAAGatCACCGGTTGTGCCAATCCAGGTAAGACGGTGAGCATCGTGGTGCGCGGCTCCAACAAGCTGGTGATCGAGGAGGCTGAACGCTCCATCCACGATGCTCTCTGTGTCATCCGCTGCCTCGTCAAAAAAAAGGGCTCTGATCGCAGGCGGCGGCTCTCCGGAGATCGAGCTGGCTCTGCGCTTGGCTGAGTACGCCCGCTCTCTGGGCGGCATGGAGGCGTACTGCGTGCGCGCCTACGCCGACGCCCTGGAGGTCATTCCCTCCACGCTGGCCGAGAACGCCGGTCTCAACCCCATCTCCACGG

Function

symbol description
cct4 Predicted to enable unfolded protein binding activity. Acts upstream of or within response to hypoxia. Predicted to be part of chaperonin-containing T-complex. Is expressed in several structures, including head; immature eye; midbrain; muscle; and pectoral fin bud. Orthologous to human CCT4 (chaperonin containing TCP1 subunit 4).

NR:

description
PREDICTED: T-complex protein 1 subunit delta-like

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0001666 response to hypoxia biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09496 CCT4; T-complex protein 1 subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299864.1 True 1960 mRNA 0.57 13 14890222 14898142
XM_034299865.1 False 1611 mRNA 0.57 11 14891306 14898142

Neighbor

gene id symbol gene type direction distance location
fam161a fam161a coding downstream 1313 14880246 ~ 14888909 (-)
xpo1a xpo1,LOC108258411,LOC107746076,LOC107729732,LOC107703835,LOC100380723,LOC106585804 coding downstream 11638 14854881 ~ 14878584 (-)
usp34 usp34,LOC107746122,LOC107729952 coding downstream 38269 14787119 ~ 14851953 (-)
commd1 commd1 coding downstream 130184 14751030 ~ 14760038 (-)
zgc:66455 NA coding downstream 152362 14732575 ~ 14737860 (-)
LOC113537617 NA coding upstream 55419 14953561 ~ 14958201 (-)
spast spast coding upstream 162779 15060921 ~ 15072345 (-)
rln3b rln3 coding upstream 176529 15074671 ~ 15077616 (-)
dcaf15 dcaf15,LOC106592097,LOC106594349 coding upstream 206035 15104177 ~ 15113293 (-)
dla LOC108258338,LOC103023774,LOC108438608,LOC107746130,LOC107703728,LOC107598533,LOC107700799,LOC107594356 coding upstream 238091 15136233 ~ 15142801 (-)
G376171 NA non-coding downstream 150415 14739369 ~ 14739807 (-)
G376127 taf5l non-coding downstream 228911 14657946 ~ 14661311 (-)
G376093 NA non-coding downstream 357538 14532367 ~ 14532684 (-)
G376055 NA non-coding downstream 423714 14462142 ~ 14466508 (-)
G376050 snrpb2 non-coding downstream 502347 14386338 ~ 14387875 (-)
G376364 NA non-coding upstream 137023 15035165 ~ 15035466 (-)
G376574 NA non-coding upstream 146570 15044712 ~ 15045359 (-)
G376602 NA non-coding upstream 200874 15099016 ~ 15101012 (-)
G376608 LOC108259073 non-coding upstream 233875 15132017 ~ 15132290 (-)
G376613 NA non-coding upstream 249643 15147785 ~ 15147985 (-)
b3gnt2a LOC108259010 other downstream 140488 14740132 ~ 14749734 (-)
ifngr1 NA other downstream 177576 14697239 ~ 14712646 (-)
G376143 NA other downstream 205894 14682387 ~ 14684328 (-)
meis1a meis1 other downstream 365706 14460283 ~ 14524516 (-)
dand5 LOC108258523 other downstream 613685 14274327 ~ 14276537 (-)
akt3b akt3b,LOC108259077,LOC108438606,LOC107594289,LOC107703832,LOC107729704,LOC101071975 other upstream 12520 14910662 ~ 14961052 (-)
triobpa LOC108259073 other upstream 219370 15117512 ~ 15129256 (-)
dpy30 dpy30,LOC107684266 other upstream 514282 15412424 ~ 15458205 (-)
G376956 NA other upstream 1019486 15917628 ~ 15920553 (-)
khsrp khsrp other upstream 1031611 15929753 ~ 15942730 (-)

Expression


Co-expression Network