LOC113526630 (LOC108258768)


Basic Information

Item Value
gene id LOC113526630
gene name LOC108258768
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17348953 ~ 17350873 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299906.1
ACTTCAAAAACCTTTGCATGAACTTGAGAGTAAGCTGCAAACCTTGATTTCTGAAAAGTCCAGGTTTGCCACCATACCTAGAAAACTCCAGATTCAGGGCCAACAGACAGAGATGCAGATAAAGGAGGAGTTTAAGAAGCTTTATCAGTTCCTCAGAGAGGAGGAGGTGGCTCGAATATCTGCACTGAGAGACGAACagaagagtaagagagagaagaTTATGGAGAAGATTGCAGAAGTTGAAGGATTGCATACTTCTTTATCtgaatgcataaaaaatattaagGATGATCTAGAGCATGATGAGAGTCTTTTCTTACAAAACTTCAGAGATACAGAGGAGAgagttaAGTTTGCACTACCAGATCCAAAGCTTGATTCAGGGTCTCTGATCGATGTGGCTAAACACATGGGGAATCTGAGATACAGAGTGTGGGAGAAGATGAAGCACCTCTGTCCTTACTaTCCAGTAATTCTGGACCAAAATACCAAAACATCTAACCTTGAGGTATCTCCAGATTTGACAAGCGTTGCATGTTCAGGCACGTCTTTACTGAACTCTCCAGAAAAACGCTCCTGCTACATCCTGGGTTCAGAAGGGTTCAGCTCAGGAGTGCACACCTGGCAGGTGGATTTGGAAGCCTGTGAACACTGGGCTCTGGGAGTTGTTACTGAATCTGCTAAAAGACTGCAAAATCTATCCAACTGTTCTTTCCTCATATCTTATATTAATGatTATGATTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299906.1 True 745 mRNA 0.42 6 17348953 17350873

Neighbor

gene id symbol gene type direction distance location
LOC113526760 LOC108258765 coding upstream 28593 17307615 ~ 17320360 (+)
LOC113526801 LOC108258761 coding upstream 42683 17300942 ~ 17306270 (+)
LOC113526590 LOC108258777 coding upstream 86729 17255077 ~ 17262224 (+)
LOC117596139 LOC108261577 coding upstream 94832 17235595 ~ 17254121 (+)
LOC117596142 LOC108261577 coding upstream 99620 17244768 ~ 17249333 (+)
LOC113526484 NA coding downstream 2086 17352959 ~ 17359864 (+)
LOC113526628 NA coding downstream 80340 17431213 ~ 17441342 (+)
LOC113526593 LOC108258729,LOC107668682 coding downstream 100719 17451592 ~ 17494811 (+)
LOC113526467 NA coding downstream 162712 17513585 ~ 17525427 (+)
tmed1b LOC108258813,LOC108411617,LOC106593283 coding downstream 201127 17552000 ~ 17558053 (+)
G377569 NA non-coding upstream 31982 17316560 ~ 17316971 (+)
G377529 LOC108258812,LOC108258801,LOC108258790,LOC108258798,LOC108258792 non-coding upstream 146335 17182776 ~ 17202618 (+)
G377499 NA non-coding upstream 240283 17108459 ~ 17108670 (+)
G377456 NA non-coding upstream 266542 17053358 ~ 17082411 (+)
G377452 LOC108258734,LOC108258759,LOC108258743,LOC108258770,LOC108258767 non-coding upstream 281521 17034906 ~ 17067432 (+)
G377604 NA non-coding downstream 64531 17415404 ~ 17427856 (+)
G377644 NA non-coding downstream 223888 17574761 ~ 17585043 (+)
G377652 NA non-coding downstream 244215 17595088 ~ 17599934 (+)
LOC117596150 NA non-coding downstream 350795 17701668 ~ 17702743 (+)
G377703 NA non-coding downstream 463658 17814531 ~ 17815106 (+)
LOC113525655 NA other upstream 173849 17156898 ~ 17175104 (+)
LOC113537672 LOC108258734,LOC108258743 other upstream 240964 17095866 ~ 17107989 (+)
LOC113537676 LOC108258766,LOC108258734,LOC108258743 other upstream 331118 17000483 ~ 17017835 (+)
b3gntl1 b3gntl1 other upstream 493937 16822550 ~ 16855016 (+)
G377269 NA other upstream 784437 16561383 ~ 16564516 (+)
LOC113526395 NA other downstream 210572 17561445 ~ 17569467 (+)
LOC113524903 NA other downstream 632613 17983486 ~ 18005140 (+)
G377747 NA other downstream 704751 18055624 ~ 18056805 (+)
G377748 LOC108258742 other downstream 711545 18062418 ~ 18068946 (+)
rdh8b LOC108258824,LOC108258753 other downstream 807220 18158093 ~ 18166225 (+)

Expression


Co-expression Network