LOC113535758 (LOC108257886)


Basic Information

Item Value
gene id LOC113535758
gene name LOC108257886
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2768629 ~ 2770657 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299928.1
TTCCCTTAAAAAGTCCAGAATAGCCAAACTGTCCTCGTTAATTCACTGGAAGTGTACACATTCACTATCACATTCATGGCTTCATCAAGGAAGTATGCAGTGGGGTCCCACGCTGGCTGCTACAGAGGAACAGCAAGAACTTTGCTCTACagtgttacagttacaggcctgagtggctattgaTACTGTTCTACTaaagtgaacttcaaacattcatgcaacatttagGACTGAAACAACAGCAGATAATTGTGAGTAGCATTAACAacaagctaacattagttaTATGAGTGATAGCTCTAACTTTTATAAAAATCTTCTCAAAACAGGGTGGGTGTAAGATATGGtaaatgttatagatttaaccaagtactggagtaaaaggaggaggatgagaaggGCGTctacagctgtcctcagtgcagaGACACTTTCACTCCCAGGCCTGTTCTACACAGAAACAACATGCTggctgaagtggtggagaaactgaagaagactgaagtccaagctgcttctcctgctcactgttacgctgaacctggagatgtggagtgtgatttctgcactgggagaaaacacaaagccatGAAGTCCTCTCTGATGTGTCGGACCTCCTTTTGTGAAACTCATCTTAAACCTCATCTTGAACTTCCTACTTTGAAAAAGCACACCTTAATTGAAGCATCCTCAAAACTCCAAGAGAGAACTGAGAAACAGAGGGAGCTAAAGAAGGAGCAGATGAAATCCCAGCAGAGaatccaggagaagcagaagaaggtgcaggagctgaaacaggcTGTGAACATGATTAAGTCTCGTGCTCAGGCAGCAGTGGAGGACAGTGAGATTATCTTTTACTGAGATGATCAGCTTCATGGAGAAAAAGCGCTCAGAGGTGACGgagctgatcagagctcaggagaaggCTGAAGTGAGTCGAGCTGAACGACTCCTGgagcaactggagcaggagatcACTGATCTTAAGAGGAGAGTCACTCATATAAAGAGATCAGGAGGAAAGGATGGGATAAAGAGTGTGGGTTTGGAGTCCTGGAGTCCTGGAGTCCTGTGctgttcttcttcctctctctctttctatcacaACGACATTAAAACTGAGCTCAAAGTTCCATCATCCTCCagaataggagtgtatgtggatcacagtgcaggaagtctgtccttctacagcgtCTCTGACACGATGAAGTTCTtccacagagtccacaccacattcactcagcctctaTATGCTGGGTTTAGGGTTTTGGGAAATGTGAGGTTGTGTGACCCAAAATAACGGTGGATGGAaaaattcttgctcatttcctcatTGTTCCTCAATGACTGTGTTATTTTACTGAGCAGTGCCTTGATGAATCCTGTTTGTAGTTTTTGCAATAAATGGAAGTTAGTCATGACCGTACtcagtttttattcattcttgGATTTTTAACAGATGACATGATTAATGAATTgattaatgaaaatatatattatcaGCATGACATAGTGAGGTTACATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299928.1 True 1532 mRNA 0.43 3 2768629 2770657

Neighbor

gene id symbol gene type direction distance location
tuba8l2 tuba8l2,LOC108411703,LOC103042625,LOC107556293,LOC107750365,LOC100708793 coding downstream 1136 2758969 ~ 2767493 (-)
stk16 stk16,LOC107674016,LOC107750290,LOC107676064 coding downstream 11392 2747268 ~ 2757237 (-)
atic atic,pur9 coding downstream 39934 2718057 ~ 2728695 (-)
cpo LOC108258336,LOC108440461 coding downstream 125943 2637335 ~ 2642686 (-)
efnb2b LOC108259076 coding downstream 135533 2617626 ~ 2633096 (-)
LOC113535480 LOC108258552,LOC108258561,LOC108258559 coding upstream 26611 2797268 ~ 2804129 (-)
LOC113535756 LOC108258552 coding upstream 37660 2808317 ~ 2811609 (-)
LOC113535483 LOC108258552,LOC108258561 coding upstream 53336 2823993 ~ 2827600 (-)
LOC113535482 LOC108258552,LOC108258557,LOC108258559,LOC108258561 coding upstream 62956 2833613 ~ 2838789 (-)
LOC117596192 NA coding upstream 104251 2874908 ~ 2892085 (-)
G369988 NA non-coding downstream 74052 2694149 ~ 2694577 (-)
G369980 NA non-coding downstream 90359 2673555 ~ 2678270 (-)
G369927 NA non-coding downstream 203377 2564712 ~ 2565252 (-)
G369930 NA non-coding downstream 205092 2562804 ~ 2563537 (-)
G369928 pcnp non-coding downstream 206171 2560880 ~ 2562458 (-)
G370023 LOC108257886,LOC108258553,LOC108258555,LOC108258552,LOC108258559,LOC108258557,LOC108262136,LOC108258561,LOC108275310,LOC108257788 non-coding upstream 596 2771253 ~ 2790054 (-)
G370024 LOC108258555,LOC108258552,LOC108258557,LOC108258553,LOC108258556,LOC108258559,LOC108257788,LOC108257800 non-coding upstream 4225 2774882 ~ 2775395 (-)
G370028 NA non-coding upstream 12615 2783272 ~ 2790676 (-)
G370019 NA non-coding upstream 47946 2818603 ~ 2821314 (-)
G370127 NA non-coding upstream 178764 2949421 ~ 2984930 (-)
LOC113535702 mx1 other downstream 194158 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 935900 1824204 ~ 1832729 (-)
G369586 NA other downstream 973405 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 1156963 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 1491816 1276021 ~ 1276813 (-)
LOC117596167 NA other upstream 72555 2843212 ~ 2853211 (-)
G370658 NA other upstream 2072672 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 2618247 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 2759335 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 3171382 5942039 ~ 5952313 (-)

Expression


Co-expression Network