atic (atic,pur9)


Basic Information

Item Value
gene id atic
gene name atic,pur9
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2718057 ~ 2728695 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299942.1
CTAGATTTTTTACATCCACGTGTTTTTAGCTCGCGCGGTTCGTGCTGCCAAGTTCTCTCCGAAGTTCActtcctttcctcctttctGCAGGTCTAAGACAGGATCCAACTCAGCACCATGTCCACTGAACTCGCTCTCCTGAGTGTGTCCGATAAGGCGGGGCTGCTGGACTTTGCGAAGCGGCTCGTGTCGGTCGGGTTGTCGCTGGTGGCGTCGGGCGGCACGGCTAAAGCTCTGCGAGATGCCGGACTCTCAGTGAGAGACGTGTCTGAGCTCACCGGTTTCCCCGAGATGCTCGGCGGTCGGGTTAAAACCCTTCACCCCGCTGTTCATGGAGGAATCCTGGCCAGAAACACTCCGTCTGACCAGGCCGACATGGAAAAACTCGGCTTTAATCTCGTGAGAGTTGTCGTGTGTAACCTTTATCCTTTCGTAAAGACCGTTGCGTCCCCGAATGTGACTGTGGCTGATGCAGTGGAGCAGATTGATATCGGTGGTGTTACTCTCCTGCGTGCTGCGGCTAAGAATCACGCCCGAGTGACGGTGGTCTGCGACCCAGCTGACTACGAGCTGGTGGCGAAGGAGATGGAGGCTTCGAGTGAGAGCGACACGTCAGTCGAGACACGCAAAACTCTCGCGCTTAAGGCGTTCACACACACCGCTCAGTACGACGATGCGATCGCTGATTATTTCCGGCGCGAGTTCAGCAGCGGAGTTTCTCAGCTGTCGCTGCGTTACGGCATGAACCCCCACCAGAGTCCTGCGCAGATTTACACACTGAAGCCTACGCTGCCCATAAAggtgctgAACGGAGCTCCAGGCTTCATCAATCTGTGTGATGCTCTGAACGCATGGCAGTTGGTTAGAGAGCTGAAGAGCGCACTGCTGAcgcctgctgctgcatcgtttAAACACGTCAGTCCTGCTggtGCGGCCGTCGGTGTGCCGCTTAGTGAGGAGGAGGCTCAAGTGTGTATGGTGCACGACATGCTGAAAGATCTCACGCCACTCGCTACTGCCTATGCTCGTGCCAGAGGAGCGGACAGGATGTCCTCGTTCGGAGATTTCATCGCTCTTTCAGACCCCTGCGATGTTCCCACTGCTAAGATCATCTccagagagGTTTCAGATGGAATTATCGCTCCTGGTTATGACCCTGAGGCTCTTCGCATCCTTGGCAAAAAGAAGAATGGAAATTATTGCGTTCTGCAGATGGATCCCAGCTACGAGCCCGACGAACAGGAGGTGAGGATTCTGTTCGGGCTGCACATGAAGCAGAAGAGGAACAACGGCGTCATCGATAAGCAGCTCTTCAGCAACGTCGTCTCCAGCGGCAGCCTTTCCGAGACGGCCGTGCGTGACCTGATCGTAGCCAGCGTCGCCATGAAGTACACGCAGTCCAACTCTGTGTGTTACGCCAAGGACGGCCAGgtgATCGGCATCGGTGCAGGTCAGCAGTCTCGGATCCACTGCACTCGTCTGGCAGGCGATAAGGCCGATAACTGGTGGCTGCGTCGCCACCCGAAAGTTCTGGGCATGAAATTCCGCGCCAACGTTAAACGCGCCGAGATCGCCAACGCTATCGACCAGTACGTCAGCAACACCATCGGAGAGggtccTGATCTAGCCGTGTGGAAGGCTCTGTTTGAGGAGGTTCCTGAACCTCTGAGCGAGTCGGACAGGAAGCAGTGGCTCGGCTCTCTGCAGGCCATCGCTCTCAGCTCCGACGCTTTCTTCCCCTTCAGAGACAACATTGACCGAGCAAAACGGAGCGGGGTTGAGTACATCGCCGCTCCGTCAGGCTCCACCGCCGACGAGGTGGTCATCAACGCCTGCAACGAGCTGGGAATCACTCTGGTGCACACCAACCTGCGTCTCTTCCACCACTGAACACATCGCTACATCTCCAATCTTCCAGTTTCTGACTTCTGAGCCCGAGAGAAGACTAAGACCTTGTAGCAGCTCTTCCATTAGCACCTTTCATTTGCTAAGCTGATTAGCATGACGTGttgcatttttcctgtttttgtgcCCTTTAAACATTCCTTTTTTGTACTGTAACTAATAACAGCCATCTAGTTGTGTTAAATCATCTCAAGTGACCATTAATATTGTAGTTAATGCTGTAAACGGTACAAAACGTTACTCAACACTACAACTCCTTCACATTCCTTAACACTGCCTGTGGCAGCTGACGCACCTGAAACGAGATTAAAATACTTTCTCCAAa

Function

symbol description
atic Predicted to enable IMP cyclohydrolase activity and phosphoribosylaminoimidazolecarboxamide formyltransferase activity. Predicted to be involved in 'de novo' IMP biosynthetic process. Predicted to act upstream of or within purine nucleotide biosynthetic process. Predicted to be active in cytosol. Is expressed in several structures, including digestive system; immature eye; nervous system; neural crest; and yolk. Human ortholog(s) of this gene implicated in purine-pyrimidine metabolic disorder. Orthologous to human ATIC (5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase).

NR:

description
PREDICTED: bifunctional purine biosynthesis protein PURH-like

GO:

id name namespace
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0003937 IMP cyclohydrolase activity molecular_function
GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity molecular_function

KEGG:

id description
K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299942.1 True 2230 mRNA 0.54 15 2718057 2728695

Neighbor

gene id symbol gene type direction distance location
cpo LOC108258336,LOC108440461 coding downstream 75371 2637335 ~ 2642686 (-)
efnb2b LOC108259076 coding downstream 84961 2617626 ~ 2633096 (-)
LOC113535812 mx1 coding downstream 135007 2575450 ~ 2583050 (-)
LOC113535562 LOC108258657 coding downstream 175191 2523115 ~ 2542866 (-)
LOC113535442 LOC108258868,LOC108258869 coding downstream 203039 2501030 ~ 2515018 (-)
stk16 stk16,LOC107674016,LOC107750290,LOC107676064 coding upstream 18573 2747268 ~ 2757237 (-)
tuba8l2 tuba8l2,LOC108411703,LOC103042625,LOC107556293,LOC107750365,LOC100708793 coding upstream 30274 2758969 ~ 2767493 (-)
LOC113535758 LOC108257886 coding upstream 39934 2768629 ~ 2770657 (-)
LOC113535480 LOC108258552,LOC108258561,LOC108258559 coding upstream 68573 2797268 ~ 2804129 (-)
LOC113535756 LOC108258552 coding upstream 79622 2808317 ~ 2811609 (-)
G369988 NA non-coding downstream 23480 2694149 ~ 2694577 (-)
G369980 NA non-coding downstream 39787 2673555 ~ 2678270 (-)
G369927 NA non-coding downstream 152805 2564712 ~ 2565252 (-)
G369930 NA non-coding downstream 154520 2562804 ~ 2563537 (-)
G369928 pcnp non-coding downstream 155599 2560880 ~ 2562458 (-)
G370023 LOC108257886,LOC108258553,LOC108258555,LOC108258552,LOC108258559,LOC108258557,LOC108262136,LOC108258561,LOC108275310,LOC108257788 non-coding upstream 42558 2771253 ~ 2790054 (-)
G370024 LOC108258555,LOC108258552,LOC108258557,LOC108258553,LOC108258556,LOC108258559,LOC108257788,LOC108257800 non-coding upstream 46187 2774882 ~ 2775395 (-)
G370028 NA non-coding upstream 54577 2783272 ~ 2790676 (-)
G370019 NA non-coding upstream 89908 2818603 ~ 2821314 (-)
G370127 NA non-coding upstream 220726 2949421 ~ 2984930 (-)
LOC113535702 mx1 other downstream 143586 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 885328 1824204 ~ 1832729 (-)
G369586 NA other downstream 922833 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 1106391 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 1441244 1276021 ~ 1276813 (-)
LOC117596167 NA other upstream 114517 2843212 ~ 2853211 (-)
G370658 NA other upstream 2114634 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 2660209 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 2801297 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 3213344 5942039 ~ 5952313 (-)

Expression


Co-expression Network