asf1bb (asf1b,asf1bb,LOC107747137,LOC103026007,LOC107703766)


Basic Information

Item Value
gene id asf1bb
gene name asf1b,asf1bb,LOC107747137,LOC103026007,LOC107703766
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16413949 ~ 16418007 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299953.1
CCGCTTTTAGAGccataatctaaaaaaaaaaaaaaaaaaaggcagtgacTTTAAGGCACAcccgtgtgtttgtgttagttgGAGTGAAATTAGTGAGATGTTAAAGACTCCTGTGCAGTGGGAaaactgttttataataataattaaggggcaatttgtgttttttcccccaagtgtGTAACGTTAACAGCTAGCATAGTAACCAGGTTAGCTAGTTTTCTCAACCTGCTGTTAGACTGCGGCttatttacactgtttatatcGACCTCTGCCTTTTTTACATAGAAACCCGGGCACAGGAGACATTTACAGACATTAACAGACATTTACAGGAATATAAACAGCCACAGGCAGGTTTATGTTGCAGGTTTTTGGGGAATTATGGCGAAAGTGCAGGTGCTGAATGTGGCGGTTTTGGACAATCCGAGTCCTTTCTGTAATCCTTTTCAGTTTGAGATCACATTTGAGTGCATGGAGGATCTGCCTGAAGATCTGGAGTGGAAGATCATCTACGTGGGCTCGGCGGAGAGCGAGGAGTACGATCAGACGCTGGACTCGGTGCTGGTCGGCCCTGTTCCTGCAGGAAGAcacatgtttgtgtttcagGCAGACGCTCCGAACACGGGGCTGATTCCTGAAAGCGATGCAGTGGGCGTGACCGTGGTGTTAATCACATGCACGTATCGGGGTCAGGAGTTTATTCGCATCGGTTACTATGTCAACAACGAGTACACAGACCCTGAGCTGCGTGAGAACCCGCCCATCAAACCCAACTACACGCAGCTGCAGAGGAACATCTTGGCGTCGAACCCGCGTGTCACACGATTCCACATCAACTGGGAGACAATCGTGGACAAATCAGAGGACTCTGAGAATGTAGACCCCGCCCCCAACACCATGTTCCCACCCAGCTGCCCACCAGGAAAAGCTCCGGCTCTAGGACTCATGCCGGACAATTCTATGGACTGCTTATAGAGGGGGAgcgaatacacacacacacacacacacacacacacacacagtgtttgagCAGAATGATCACTCAGCACTCACAGGATGATTTTGGATGCACTTCTCCTCCTGAACACAGGGTGGCagtgaaggaacacacacacacacacacacacacacacacacacacacacacacacacacaccatgctgctCTAAAGTTCATCAGTGTGAATGTTACTTCTGCAAGTAGGACATGTTCTTGGATTAACATCCCCTGTCACACCAGTCACTGCCTTctgatgtcatcagtgtgcGCCTCTAACTCCGCCCACTCCAAGTCCACTCCAAGATACATCTCTGTGTGTAGCTCTGCCTTGTAGttcataaaattaattaatcaaaatgaaatgatgaaatattgaCCTGCAGTTAACTGTTAAGTTCAAATAATATCAGTAATATCAgtaataattagattttttgcATACCTAGCTTAGAAGTTTTTTGCATACCTAGCTCTAAAAGTTTCCTCTAAAATACGATGTTTTTTTACAAAGACGTTTCAGTATTGCACTATTCAAAATTTGAATACACGTAATActccattttttaaacatattttgatACACACTACAAAATCtgtatgttaatgtgtgtttacCATAGGCGGTAAGTGTGACACATTTCCCTGTATTGAGGAGGATAAAAATAGCAAACACATCGCTTTTATAATGGAGGTCTGACAACAACTCAAACAACTTTCCATTCTTTTATCAGTACAGGAAATGTGTCACTTACTGTCCAGTATAATCGTGCATATGCCATTATTTCATCATCAGGCCAGCCACTCAAGcaattaaagtttttttaaaacattattccaaaaaaaaaatcaataaataagaGCTTAGGTTGGGAAAGAAAATGCTTGAACAAAATCCTGAATTCATTAACGCAGCTGCACCTTTTTCATTCAAATTATTTAGTAGATTGTATTGGTAGTTATTTAGCTGCTTGAGCTAATGCTAGCTCGCTACACACACACGGTAAAAGAGTGCTAATTCAGGCTTGAACGGTCAAATGCGGCtttaaaaagaaacttt

Function

symbol description
asf1bb Predicted to enable histone binding activity. Predicted to be involved in DNA replication-dependent nucleosome assembly and DNA replication-independent nucleosome assembly. Predicted to act upstream of or within chromatin assembly or disassembly. Predicted to be located in nucleus. Orthologous to several human genes including ASF1B (anti-silencing function 1B histone chaperone).
asf1b Predicted to enable histone binding activity. Involved in DNA replication-dependent nucleosome assembly and DNA replication-independent nucleosome assembly. Located in chromatin and nucleoplasm. Part of protein-containing complex. Biomarker of breast cancer.

NR:

description
PREDICTED: histone chaperone ASF1B

GO:

id name namespace
GO:0006333 chromatin assembly or disassembly biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K10753 ASF1; histone chaperone ASF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299953.1 True 2057 mRNA 0.42 4 16413949 16418007

Neighbor

gene id symbol gene type direction distance location
prkacab prkaca,prkacab,LOC107694605,LOC107703755,LOC106526233 coding downstream 2218 16398919 ~ 16411731 (-)
samd1b samd1,LOC108258478,LOC107573600,LOC107580959,LOC103458189,LOC108442215,LOC106534668 coding downstream 25742 16379306 ~ 16388207 (-)
ndufb7 ndufb7,LOC107573602,LOC107694602 coding downstream 40742 16368498 ~ 16373207 (-)
dnajb1b dnajb1 coding downstream 65492 16341237 ~ 16348457 (-)
LOC113537406 LOC108258437 coding downstream 167658 16238209 ~ 16246291 (-)
LOC113537390 LOC108258708,LOC108258415 coding upstream 79778 16497785 ~ 16525406 (-)
LOC117595682 LOC108258708,LOC108258415 coding upstream 115827 16533834 ~ 16559160 (-)
zgc:65894 tubb4a,LOC107711200,LOC103367161,LOC108411210,LOC103372938,LOC100712088,LOC108258713,LOC103468788 coding upstream 165372 16583379 ~ 16589630 (-)
gcgrb LOC108258714,LOC108411214 coding upstream 212617 16630624 ~ 16663097 (-)
LOC113537431 LOC108258715 coding upstream 282090 16700097 ~ 16701130 (-)
G377191 NA non-coding downstream 23146 16389094 ~ 16390803 (-)
G377172 NA non-coding downstream 63490 16350249 ~ 16350459 (-)
G377171 NA non-coding downstream 63889 16349377 ~ 16350060 (-)
G377125 NA non-coding downstream 148302 16263903 ~ 16265647 (-)
G377084 NA non-coding downstream 234827 16178610 ~ 16179122 (-)
G377244 NA non-coding upstream 69783 16487790 ~ 16488131 (-)
LOC113547464 NA non-coding upstream 180906 16598913 ~ 16600222 (-)
G377359 NA non-coding upstream 188323 16606330 ~ 16607547 (-)
G377422 LOC108258724 non-coding upstream 438772 16856779 ~ 16858709 (-)
G377441 NA non-coding upstream 577391 16995398 ~ 16995649 (-)
si:ch211-286b5.5 LOC108258470,LOC108443951,LOC103031617,LOC105901802,LOC101074561,LOC103154361,LOC100701095,LOC105012046,LOC107391594,LOC105938735 other downstream 192334 16216750 ~ 16221615 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other downstream 249579 16152919 ~ 16164370 (-)
vps54 vps54,LOC107709616 other downstream 428990 15963876 ~ 15984959 (-)
khsrp khsrp other downstream 471219 15929753 ~ 15942730 (-)
G376956 NA other downstream 493396 15917628 ~ 15920553 (-)
LOC113537389 NA other upstream 3254 16421261 ~ 16475431 (-)
si:dkey-76b14.2 LOC108258416,LOC105891053 other upstream 148246 16566253 ~ 16583137 (-)
slc25a10 slc25a10,LOC108411213,LOC107747133,LOC107712055,LOC107569289,LOC100693267 other upstream 203160 16621167 ~ 16741989 (-)
G377416 LOC108258724 other upstream 427005 16845012 ~ 16851663 (-)
LOC113525650 LOC108258801 other upstream 758775 17176782 ~ 17194992 (-)

Expression


Co-expression Network