caly (caly,LOC108258305,LOC108434710,LOC103039857,LOC105891014)


Basic Information

Item Value
gene id caly
gene name caly,LOC108258305,LOC108434710,LOC103039857,LOC105891014
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8835487 ~ 8848164 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299956.1
CGACGACGCAGGCGACGCAGCCTCCGCTGAATCCGGCATTGCCACGGTAACCGTGCAGCTCCGCTCAGCCGCactgagcctttttttttccttttcctcagaAATCTTCCCCAAAGAGCAGCCACAGCGTTACCGTCCCAGAAAATCGaaATGGTGAAACTGGGCAGCACTCTCGGCGAGAAGGTGGAGAGGGAGCCATCTCTGGAGGATGGCTTTGATAACATCCCTCTGATCACACCACTGGAGGTTAACCAGCTCCAGAAACCATTTCCAGATAAGGTCATCGTCAAAACAACCACCGAGTATCAGCTGCAGAAGAAGCAAAAGAAGAAACTGTACATGCCAAGCATTAAGAAGTTGAACATAAACCTTTATGACGAGGTGTCAGAGAAGGTCAAGctcacAGGACTTATTCTTATCACCTTGGCTTTCCTTGCGTGTCTGCTACTGCTGGTTATGTATAAAGCTCTGTGGTACGATCAGCTTAGCTGCCCTGAGGGCTTCGTCCTCAAGCATAAGCACTGCACCCCGGCCGCTCTGGAGATGTACTACCCGGAGCAGGACACAGGCTCGAGGGGAAGCCTGTACACCGCCATCAGCCATCTGAACCCAGCTAAGAAGGCTCTCCCTGAGCTCTCATCTCCCTGGCTGCCTGTCATTAACGCCATGAAGGAATCCCAGAAGGCCAAGGGGGAGGCGAGCCACTCCCAGCagtgagggatggagagaggggATGGTGGAGGAGGAGCTATGACAGAGAGGTTATGTGTATGCTTGTTTGAGTGAAAGAGGAAGTACAGCATTTAGATgaagtgtgtgcgtgcgtgtgtgtgcgtgtgtgtgcgcgtgtgtgcgtgtgcacgtGTGCTGGTGTTCCCTCTGTATATGTCCTAAGCATCCAGACGTCCAGACCAGATCAgatatttgtctttaaaatgcaGAGAGGAGCTCCAAAGCCTACTGAAATCAGCCGATCTCTCTAAGGAATTTCCCTTACTCATACTTGACAATACAAACGCTATCAGCTCTTCAGAAACCGTCTCGATGTATTAAATCAAATGTAGATATTAGCAACTCGTTCTTTAGATTCATAACTTCATGTCCTTTGACTCATTGTGCTGTTGTGGATTCATTAGTTTTTGCCTCGGTGTTTGTGCTTTTCACCATCTCCACCTTAAGTAGCTCTCGCTCGGTTTAACGTGAAAGTAGCTTAGCTTAGCAGAACAACCCATGCATGGCGTGTAAAATGTGCTctcaaacaggaaaaaacagcATTCATATGATTAAAAATAGTTTCAATCACAATCAAGTCAGAATCATACTCTATACAATTTTTCTCCTTAAGAAATTTTGCTAAAACATGTGAtctgttaataaatataataaagctaGCAAACCATGTTTTGCTTTATGCATAGACATACTTTATACCCATGTAGAGATTGCTGTATAATCACTGGCTGTTTACACGAAAATGAAAAATTGCTGAATGTAATGTGAAACACAAGTGAACAGGATTTTGATATGTATTTATCACTTCATGtatcgtgattttttttttccttcgtttgtttgtgtatttgtgctcAAATGGACATTTCCCATAAAATTCAAGCCACCAGCAACTGTAGACATATTTCATAAAACATCCTGTTGTGCACACTCAagaatgtgaaattaaaaccactaaattaaataaaggtgTCCTTAAGTATGTAGTTTAAAGGACACCGTTATGAATGTGTTAACTTATCTATCTCCGATAACCATCTTTTACTAATTTTCCCCAATTTGCCTTGATTGTAACGTGCCATCATATACATTTTTCCTTGAAAttcttattgtttatttatgtatcatTTTTGTAAGTATTCATCTGTATAGCTTTTGGGTATTTATTTGCTGGAACTACTTAATTAATTGCATTACATTTCAGTATATTAAGCTggaaatttattttgtatttattttcatactgTTTTTGGTGTATATTTTTACTGGAACAGAACAGTTAGTGTGAGATCCTTTTAAAAAGCAGCTACCGATGTTAATCCTCCACTATTAAGTCATGTGTACATGTGGCAGTCTACTGTTATTAAATGGCTTCATCTTACGGGAATAAAGATTTCAGTATTCAGCA

Function

symbol description
caly Predicted to enable clathrin light chain binding activity. Predicted to be involved in clathrin coat assembly and endosomal transport. Predicted to act upstream of or within dopamine receptor signaling pathway. Predicted to be located in membrane. Predicted to be active in endosome. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in attention deficit hyperactivity disorder. Orthologous to human CALY (calcyon neuron specific vesicular protein).

NR:

description
PREDICTED: neuron-specific protein family member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299956.1 True 2140 mRNA 0.42 5 8835487 8848164

Neighbor

gene id symbol gene type direction distance location
msx1b LOC108258334 coding downstream 37239 8796367 ~ 8798248 (-)
taf5 taf5,LOC107583167,LOC107684290,LOC107676012 coding downstream 83237 8743452 ~ 8752250 (-)
pdcd11 pdcd11,LOC104950700 coding downstream 95070 8710383 ~ 8740417 (-)
LOC113537765 NA coding downstream 138174 8694537 ~ 8697313 (-)
col17a1a col17a1 coding downstream 166168 8640512 ~ 8669319 (-)
sorcs3 LOC108258285,LOC108443686,LOC107746061,LOC107566138,LOC107684317,LOC105891017,LOC103472494,LOC106951909 coding upstream 458569 9306733 ~ 9547257 (-)
cfap58 cfap58 coding upstream 748850 9597014 ~ 9705826 (-)
sh3pxd2aa sh3pxd2a coding upstream 959008 9807172 ~ 9823708 (-)
stn1 obfc1 coding upstream 1071658 9919822 ~ 9927977 (-)
lrrc58a LOC108258943,LOC108428195,LOC107566531 coding upstream 1083285 9931449 ~ 9937173 (-)
G372742 NA non-coding downstream 47346 8775032 ~ 8788141 (-)
G372522 NA non-coding downstream 391422 8428604 ~ 8444065 (-)
G372471 NA non-coding downstream 631263 8202768 ~ 8204224 (-)
G372307 NA non-coding downstream 819099 8016105 ~ 8016388 (-)
G372300 NA non-coding downstream 846289 7988950 ~ 7989198 (-)
LOC113537261 NA non-coding upstream 115421 8963585 ~ 8965621 (-)
G373288 NA non-coding upstream 911577 9759741 ~ 9759949 (-)
G373292 neurl1,LOC107676877,LOC107746052 non-coding upstream 915455 9763619 ~ 9764526 (-)
G373296 neurl1,LOC103384027 non-coding upstream 918875 9767039 ~ 9767482 (-)
G373310 neurl1 non-coding upstream 937819 9785983 ~ 9786861 (-)
tsga10 LOC108258346 other downstream 224646 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 403049 8429562 ~ 8432438 (-)
timmdc1 timmdc1 other downstream 506461 8320868 ~ 8329026 (-)
LOC113537489 NA other downstream 568215 8261435 ~ 8267272 (-)
cars2 cars2 other downstream 750948 8069402 ~ 8084539 (-)
LOC117596103 LOC102201964,LOC102304430 other upstream 1030679 9878843 ~ 9918779 (-)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 1573988 10422152 ~ 10435367 (-)
lipt1 lipt1 other upstream 2023060 10871224 ~ 10872556 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 3230727 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 3776887 12625051 ~ 12630403 (-)

Expression


Co-expression Network