si:ch211-243a20.3


Basic Information

Item Value
gene id si:ch211-243a20.3
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11247809 ~ 11258475 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299986.1
AAAGCTCCCATCTGGACACAGCTGgactacaggagagagagagagagacagagagagagagagacagagagagagagagatgaagagagttGAAGAAGCGtgaattctctctctgtcccaaataaaaacaagtgGGGCACAGCTTGCATAGCTCTTCCTATAATCACATTACTGCTGCTCAGAAAAGAGGGAGGGGAACAAACAAGAGATAGACAACGATTCAGAAAGGGAAAAAGGAAAGCAGGAGAAAGCTGTGAAAGAGTGGTcggaaggtaaaaaaaaaatctgtttttgaatgaaaaaagtCCTGCAGCAGGTGTAAGACAACCAGCAGAAGAACACCATCACCTTCTGAAAGCgccTCTGAGCTGTCGTGCCCATTCCCATGGCAACGAGGACAGTAATGATGCTGGCTGTCATCTTGATGTTTTTGGCCTCGTCGCGTGCAATGAGCAATGAGCTGGAAGATTATGGCACCTGGAACTATAGAGAAGGAGCGGAACACGTGAACGTGGCTAATGTTCGGAGTGTGACGAGAGTGCTGGACACTTGGGGCAAGCACATCTTTAACGAGATCAAGACGCTGCTGCACTCCCAGCCCAATACTCTCCTGCCTGACTACTCAAGAGTACGTCCTCTCTCCGAGTCCCTCAACGATCTCTTCAGAGAAGTCTCCCACTTACAGAGGCGCATCACAGACCTCAACAATCGCCTAGCAACCTTGGAGCCCTTTCTCCGTCGTCATGGCTACTACGAGGAAGACAAGCAGGCCACTGAAGGAGCCCCCCAGAGCCTAAAAGGTGCAGGCACGAGTCTGGCACAGTACCCGCGCCGGAGCAGGGTCCGAGTGACCCGGCCCGTGAACAGGGTGGTTCGAACCAGGAGAGTCAGGGTGTACAAGGATGAAACTGGGAAGGTCAAAGTGAGGGACATAGAAAGATAGGTAGAAAGGAGTGACAGAGATATATTATAGCCTAAGATATACAAactattgatattttaaaaagatattaataatatgcaaattaattttaattaatattaataatgtaaattaatatgaataatgtaTTGAATATAACCAGAAAATTGTCCGTGTTGAATTATCATTCTCATATCAACCTCATGTACTGAGTCACGTACATCATATAAATTATAGAAGAATATGTTCTCTCTGCTGGCTGCACTAGTGTAAGCTCAGATCTCAGAGGTCCAATCAGAGTTCTCTGGCAGAGGAAACTTTAAGCAGCTTTCACTGGACTGTAACTAACACCCCCAGCACAGAAAACTTCGCCTAGCTTGTTAACAGTCCCCCGGTGATTTAACTTTTTGACCAAGTTAAGATTAGTCTTAAAAACCTCaaagaaaatgttcttttttataCTGGTAAGTTTGTTTGGACTTTTGGGATGAGGACTCAGGCTAACACACAAGTGACAGAGTTTCAGCTGAAGAAACTACTTCTCAATAAACATGTGCTGAAACTTTGTTTGAAGGAGTGAtcttaatgtttataatatactACATTAATTATGCAGTACAAATTCACTGATTCACAAGACATATATCAATTTACAAGACAGCTTGTTTGgctgaatgaatcatttactAGTAGACTAGAAACATAGTCAGTCTATACACATATGGGTCAAAGACAAGAAGggttttaaaacataaaaatgtcatttgaattcatttgaattaagtaCTTTTTACTAGATGGCTGAGTgtttcataatttttatttaggAAAAATTCAGCAGAAATTAAGTCAattgaaatgtcattttgtaTAACCGATAACTGTCAAAAATGAAGCACACTTTTACCTATACAAGCTAATATGTACAAAAATCATACTTTAAAGATTTATACGCCACCTAGGCTGTTTtccactttctttatttttttttatctttaagccaatttaagtatttaatcttcattcattcaagtatcttcatttaaataataataataataataataataataataataataaatgtgatattaatattgatattcattttgatacatataaagcaaaatacaaaatatatgtgCTGTGATATATTGAAATTCTGAATGTTTTCCTGTATGTTGACATACCTAagagatatactgtacataactcAATATTTCTAGTTGTGTGTTGAATCAGTGTCtgatatatacagttatatatacagttatgtGCAGAAGTTTGCACCACCCGTAGATTTTAGGTGAAGAAGAAAGCATATCTATTAACCTACAAAAAAGTATTACATTATTCATATGAAATTAGAAAGGAAGATGCAAACCTCCAAAAATTTAtaactttaaaatttatttgtttgtcattttgttaTGCAGTAAATTGCAAAAAGTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107676841 isoform X2

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04510 Focal adhesion

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299986.1 True 2374 mRNA 0.37 4 11247809 11258475

Neighbor

gene id symbol gene type direction distance location
trappc5 trappc5,LOC107712234,LOC107692146,LOC107676838 coding downstream 195697 11046759 ~ 11052112 (-)
mcoln1a mcoln1,mcoln1a,LOC108428233,LOC107561871,LOC107676888,LOC107718592,LOC107603030 coding downstream 201744 11025293 ~ 11046065 (-)
si:ch211-214c7.4 prr36,LOC108258951 coding downstream 227824 11001667 ~ 11019985 (-)
pkn1a LOC108428230,LOC107603033,LOC107712223,LOC107676851,LOC107561874 coding downstream 252044 10949078 ~ 10995765 (-)
map2k7 map2k7,LOC107712243,LOC107692141 coding downstream 301107 10934145 ~ 10946702 (-)
emp1 emp1,LOC108258510,LOC107718756,LOC107692152,LOC107603024,LOC107676894 coding upstream 16787 11275262 ~ 11280128 (-)
LOC113537574 LOC108258505,LOC108439141,LOC107376145,LOC106957017,LOC103468358,LOC106517844,LOC102204789,LOC106930820,LOC102799753,LOC101476653,LOC102083067 coding upstream 44308 11302783 ~ 11308486 (-)
si:ch211-239f4.1 evi5l,LOC108258486,LOC108428244,LOC107676895,LOC107718810,LOC107692153 coding upstream 54290 11312765 ~ 11352381 (-)
LOC113537567 LOC108258496,LOC108428189 coding upstream 102951 11361426 ~ 11370055 (-)
LOC113537638 LOC108258487,LOC108258488 coding upstream 116030 11374505 ~ 11379803 (-)
G374198 grin2b,grin2bb,LOC108258482,LOC107603025,LOC107551907,LOC107676879 non-coding downstream 4972 11238241 ~ 11242837 (-)
G374196 LOC108258482,LOC107676879,LOC107551907,LOC107603025,LOC107692185 non-coding downstream 10378 11237062 ~ 11237431 (-)
G374111 NA non-coding downstream 100136 11147454 ~ 11147673 (-)
G374105 NA non-coding downstream 107998 11139183 ~ 11139811 (-)
G374093 atf7ip non-coding downstream 126978 11084642 ~ 11120831 (-)
G374230 ddx39aa,ddx39ab,LOC100304672,LOC107603018,LOC107692155,LOC105901571 non-coding upstream 100368 11358843 ~ 11360421 (-)
G374370 NA non-coding upstream 335491 11593966 ~ 11594981 (-)
G374371 NA non-coding upstream 336717 11595192 ~ 11596239 (-)
G374442 NA non-coding upstream 410518 11668993 ~ 11669256 (-)
G374495 c26h3orf70 non-coding upstream 494099 11752574 ~ 11755115 (-)
lipt1 lipt1 other downstream 375253 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 812442 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 1329030 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 2636968 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 2815371 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 820416 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 1366576 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 2049238 13307713 ~ 13320530 (-)
G375428 NA other upstream 2180744 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 2713861 13972336 ~ 13980251 (-)

Expression


Co-expression Network