LOC117595692 (LOC108258862,LOC108258860,LOC108258859,LOC108258861,LOC108429797,LOC108261765)


Basic Information

Item Value
gene id LOC117595692
gene name LOC108258862,LOC108258860,LOC108258859,LOC108258861,LOC108429797,LOC108261765
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6772355 ~ 6779290 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299998.1
gtgtatatatatatatatagagagagagagaaccacaTGAATCACTTTCAGTTTATTCACATCCTTTGTGAAATCAAGTAGCTATGATGGAGCGTAAACAAGATAGTTATGAAGATATTGCTTATTCTGGTGAAAAGAGTAAGCCAATGGAGGGGGTCTTCCATAGCCATTTAGAGGAGAGAGTTCGTCCTTATATTGATCTGATTGACTCTTTGAGGCTGATTGGTGTTGAAGAAGATTTGTCTTTGCCAACTATAGCTGTAATTGGAGATCAGAGTTCTGGAAAAAGCTCTGTGCTGGAGGCACTATCTGGAGTGGCATTGCCCAGAGGGAGTGGTATTGTGACAAGGTGTCCACTGGAGCTAAAGCTGAGGAAGATTAAATGTGGTGTTCAATGGAAAGCCGTAATATCTTACAAAGAACAGTTCGTTGAGTTTGATGACCCAACACTGATTGAGGGTTACGTTGAGGAAGCCCAGAATGAGCTGGCTGGAGAAGGCGTTGGAATTTGTGATGAACTCATCACTCTGGAGATCATGGCTCCTGATGTGTGTGACCTCACACTGATCGATCTCCCTGGGATTGCACGAGTTCCTGTAAAAGGTCAACCTGACGACATTGGACATAAAATCAAAAATCTCATATGGAAATATATAGAGAAGGATCAGACTATAAATTTGGTCGTAGTCCCATGTAATGTTGACATTGCAACAACAGAAGCTCTGAAAATGGCACAGGAAGTGGATCCTGAAGGAAAAAGGACATTGGctATTCTTACAAAGCCAGACCTTATAGACAGGGGAACAGAGAAGAACATATTGGATATAGTCCGAAATCAGGTCATTCCCTTAAGCAAAGGATATGTCATCGTCAAATGCCGTGGCCAAAAGCAAATTGATGATAAGATCTCTCTGTCTGAGGCCACTGGAGTAGAGAGGGAATTCTTCAGACGTCATGAATTCTTCAGTTGCCTGTTGTATGAGGAGAAAGCAACTATTCAGTCTCTCGCCACCAAACTGACTCAAAACCTAGTTGATCACATCAAAaAATCATTACCGCTAATCTCAGAGGAGATAAAGAAGCAGCTGTGGATCTTGAGGAAAGAGCTAAGTCAGTGTGAACCTGGCCCACCACTGGAACCACAGAAGAGGAAGATCTTTTTTATTGAtACCTTGACAAAATTTAATGATAAGATCAATCGCTTGGCATCTGGGGAAGTGGTCAACAATGACAACTTGTTTGTACTGCTTCGGTCTGAATTCAAAAAGTGGAAGGACCATCTTGACAACACAAAGGGATCATTTCACAAAACGGTCCAGGACGTGGTGAATGAATATGACCTGATGCACAGAGGACGTGAGCTGCCTGGTTTCAGTGACTACAAGGTGTTTGAGATGGTGGTGCAGAAGCTTGTGATCCAGCTAACAGGAACAGCCATTGACACACTCAGGGTCATCAGAGACACCATTCAGAAACAGTTTTCAGATGTTTCCAAAACCTGCTTCCTCAACTACCCTTTCCTCCAGTGTGTTGCAAcgAACAAGATAGACAACATTCAGTCAAAGCAGGAAGCCAAGGTGGAGCAGAGGATCATGGAGCAGTTTGAGATGGAACAACTGGTCTACACTCAAGATGGCATCTACTTCAAGACTTTGAATGTGACTCACTCTGCTGAGGGACAAAAGGCTTCAGAAGACAACTTTTCTGGATTTGATAGCAGAAACAAATATCCTGAAATGCTGCGGGCTTACTATGAGATCGTGGTGCAGCGCTTGGCTGACCAGGTGCCCATGCTGATCCGATACTTCATGCTAAAGGAATCCGCTCAGCTGTTGTGCACCGAGATGCTGGGTTTAATGGACAGTGCCAACGTGGCCGATGCATTGCGTGAAGACTCAGATGCCAGCAGACGTCGCATTGACACGCAGAACCGCGTGGACCGTCTTACCCTTGCTCAAGAGAAACTCAGCAACTTTGTTTGAATccagtgaaaatcccagatcagtagctatagaaatactcaaaccagtctggcaccaacaatcatcccacggtcaaagtcacagagatcagatttttttccctattctgatgtgaacattacctaaAGCTGcgggcctgtatctgcatgattttatgcattgcactgctgccacacaattggctgattagatgcATGAATTAGTAGATGTATAGGTGATTGTTGGatagtttctttttctttattatagAAACCTGGAAGTATTACTTGGTTGATACAGTTTATCAGAAAATGTGGATCTAAAGAGCGAAATTTCACCATACCATTGCATTTCCAAAGTCAccattcatttcattatttcagtgGATTCTTTTACCTCCAGCCTTCATTACCACAAACATGATCTAATAGAGCATACACcaattagccataacattaaaaccactgacaggtgaagtgaataacattgattatctcattacagtggcatctgtcaaggggtggggtatattaggcagcaagtgaatagtcgacaagttgatgtgttggaagcaggaaaaatgggcaagcgtaaggatctgagtgacattgacaagggccaaattgtgatggctagacgactgggtcagagcatctccaaaatgttatgttagtataaataacttcaaatgatttaaatttatatccagatttttaTGTAATGCCAACAGTATTGTTATACATAATTCTTCTGCCAGTTAGACAATAGTGGTGTATATAGCGGTATCTGGGAGGGATAGATTTGTTTAACGATACATATTCATTTGCCTAATTCTTGTTTCTATTATACAAAGTACTTTAAattcctgatcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299998.1 True 2834 mRNA 0.42 14 6772355 6779290

Neighbor

gene id symbol gene type direction distance location
LOC113537509 LOC108258862,LOC108258860,LOC108258861,LOC108258859,LOC108429797,LOC108261765,LOC108258858,LOC108434714 coding downstream 1637 6742587 ~ 6770718 (-)
LOC113537618 LOC108258862,LOC108258860,LOC108258861,LOC108258859,LOC108429797,LOC108261765 coding downstream 38999 6721328 ~ 6733356 (-)
cep97 cep97 coding downstream 57787 6703434 ~ 6714568 (-)
nfkbiz nfkbiz coding downstream 73324 6691664 ~ 6699031 (-)
eed eed coding downstream 96434 6668223 ~ 6675921 (-)
mxh si:dkeyp-110c12.3,LOC108258858,LOC108434714 coding upstream 11870 6791160 ~ 6796139 (-)
arhgap20 LOC108259036 coding upstream 56137 6835427 ~ 6862103 (-)
LOC113537750 fgf14,LOC108258297,LOC108434733,LOC105911936 coding upstream 178730 6958020 ~ 7025006 (-)
si:ch211-91p5.3 NA coding upstream 289888 7069178 ~ 7082854 (-)
LOC113537541 c26hxorf38 coding upstream 305636 7084926 ~ 7090530 (-)
G371487 NA non-coding downstream 205410 6563849 ~ 6566945 (-)
G371454 NA non-coding downstream 236351 6529397 ~ 6536004 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 767565 6001838 ~ 6004790 (-)
G371135 NA non-coding downstream 770742 6001179 ~ 6001613 (-)
G371153 NA non-coding downstream 772881 5998848 ~ 5999474 (-)
G371595 NA non-coding upstream 29203 6808493 ~ 6815071 (-)
G371632 NA non-coding upstream 88454 6867744 ~ 6867960 (-)
G371625 NA non-coding upstream 100580 6879870 ~ 6881780 (-)
G371634 NA non-coding upstream 112476 6891766 ~ 6901343 (-)
G371787 NA non-coding upstream 372148 7151438 ~ 7153159 (-)
LOC113537742 LOC108258591 other downstream 409152 6358639 ~ 6363203 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 738962 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 820042 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 1225323 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 1377343 5388904 ~ 5395012 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 91276 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 279545 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 577981 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 938973 7718263 ~ 7724795 (-)
fam155a LOC108258331 other upstream 1132920 7912210 ~ 7993096 (-)

Expression


Co-expression Network