wu:fa56d06 (LOC108258903)


Basic Information

Item Value
gene id wu:fa56d06
gene name LOC108258903
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5549553 ~ 5557090 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300024.1
TGTGCGTATCTTAATCAGGTTCAGTGTGCTAACTGCACATGCTGCGTGAAACCTGAGCATCTCGCTCAAGATTTTATCTATTGGAGACATGTTAAAATTTGTGTTGCTACTCTGTGTTGCTGTGGCTGgCTCTAATGCTAGACCTTTGCAATATAATACTCTTCGTATCCAAAATGGTGGATGGGTCATTGGAGCCCCACAGCTGGTACAAAATGGGCAAGAATACATGGGGAACTTTGGATCTGCTGAACACCATAGACAGGACACAAACGcTGAACCTCAGTGGGAAGTTGTTCTTGCTCCAGAGCATACAGAAAAGATGCAAGATGATATGAACCAGAAAGTTGCTCCCACTGAGGAACACAGACAAGGCACTGAACCATCTAGGCGCTTCTTGGTGGACCTGAACACCGGCTTGTTAAAGGAATACATCAGTGAGATGGACAGGAGTGTTGAAGTCTACAATCCTGCATCCAATTCTGCGTTCAGACAGGGCACTCAGAACTCTTGTGTAACTCTGGTGGACGTTAGAACAGGGCAACGGTTGCCTCAGCTGTCAGAGATGCAGAGGAGAGCAGCACcatTGTCTCAGTTCAGACAAGGCACAGAGTACAATGAGGCACTGTTGATGGAACTCAGGAAGGCCCAGATGATTGAGAGCATGGAAACAGCCAAAGTTAGCAAACAGGAAACCACCCACAAATCAGTTCTACCTGAGCTCCGCAGACAAGGAACAGAACCTTCTAGACGCTTTCTTGTGAACCCAAACACTGGATTAGTAAAGGACCATGTCAGTGAGATGGAAAGAAGAATTTCAGGCTTCTACAATCCTGCATCCAATTCTGCATTCAGACAGGGCACTCAGAACTCTCGTGTAACTCTGGTGGACACTAGAACAGGGCAGCAGTTGCCCCAGATGTCAGAGATGCAGAGGAGAGCAGCACCATTGTCTCAGTTCAGACAAGGCACAGAGTACAATGAGGCAATGTTGATGGAACTCAGGAAGGCCCAGATGATTGAGAGCATGGAAACAGCCAAAGTTAGCAAACAGGAAACCACCCACAAATCAGTTCTACCTGAGCTCCGCAGACAAGGAACAGAACCTTCTAGACGCTTTCTTGTGAACCCAAACACTGGATTAGTAAAGGACCATGTCAGTGAGATGGAAAGAAGAATTTCAGGCTTCTACAATCCTGCATCCAATTCTGCATTCAGACAGGGCACTCAGAACTCTCGTGTAACTCTGGTGGACACTAGAACAGGGCAGCAGTTGCCCCAGATGTCAGAGATGCAGAGGAGAGCAGCACCATTGTCTCAGTTCAGACAAGGCACAGAGTACAATGAGGCAATGTTGATGGAACTCAGGAAGGCCCAGATGATTGAGAGCATGGAGACAGCCAAAGTTAGCAAACAGGAAACCACCCACAAATCAGTTCTACCTGAGCTCCGCAGACAAGGAACAGAACCTTCTAGACGCTTTCTTGTGAACCCAAACACTGGATTAGTAAAGGACCATGTCAGTGAGATGGAAAGAAGAATTTCAGGCTTCTACAATCCTGCATCCAATTCTGGGTTCAGACAGGGCACTCAGAACTCTCGTGTAACTCTGGTGGACACTAGAACAGGGCAGCAGTTGCCCCAGATGTCAGAGATGCAGAGGAGAGCAGCACCATATGGTTTCAGACAAGGCACTGAGTACAATCTGCTGACCTTGTTGAATCTCAGGAATGCACAGATGATACACACCAAAGACAGCAAAGATAAAACCCCACACACTGTACAGGACATGGAAACCAATGAGGtgtttCCTGAGTTCAAACGTGGCATTGAATATTCACAAGCTCAAAGACAACAGATCATGGATCAACACCTTTTCCAAGCTCTAGAAAGTAATGAAGTGGATATTTCACCCCCATTGGAAGAGTTCAGACATCATATGGATTACAGCTATGGTAATGTAATAGATAGACGAATCATGGAGCCTTCTTATGTGAAGCAAAGTGATGAAGTTTCGACCTGTCAAGGAGAGGTTATTGCTGGCAAATGCTATATTTTCAAACCAAAATTACAGACCTTCGGTGAAGCTGAAGATGTTCAGAATTGATGAAAGCTGGTGGACAGCAGTAGCCTGTGGCCTGAAAACAGTGTAAAAATCTCAGAGGAACAAAACCATCTGTCTTATCAAATGATTATACACTGGTTTGCCTAACTAGGAAGAggatgtttttatctgaaataatTCACAATCTCTTAATGTTTTTcaacaaaataaagaac

Function

NR:

description
PREDICTED: uncharacterized protein LOC107555251 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300024.1 True 2277 mRNA 0.45 15 5549553 5557090

Neighbor

gene id symbol gene type direction distance location
urp2 LOC108258299 coding downstream 136780 5409611 ~ 5412773 (-)
LOC113537353 atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265 coding downstream 209032 5331920 ~ 5340521 (-)
LOC113537467 atp1a1a.4,LOC108258577,LOC108429867,LOC108429865,LOC108429869,LOC108258578,LOC108258576,LOC108429866,LOC107717913,LOC107653679 coding downstream 233358 5288685 ~ 5316195 (-)
LOC113537466 atp1a1a.4,LOC108258574,LOC108429869,LOC108429865,LOC108258576,LOC107717913 coding downstream 272461 5269510 ~ 5277092 (-)
LOC113537465 atp1a1a.1,LOC108258575,LOC108429870,LOC107653678,LOC107717912,LOC107718011,LOC107698904,LOC107555257 coding downstream 281355 5253693 ~ 5268198 (-)
n6amt1 n6amt1,LOC107563652 coding upstream 32682 5589772 ~ 5596095 (-)
jam2a jam2 coding upstream 339246 5896336 ~ 5908867 (-)
mrpl39 mrpl39 coding upstream 356869 5913959 ~ 5920199 (-)
mrpl16 mrpl16 coding upstream 406662 5963752 ~ 5969065 (-)
txnl4b txnl4b coding upstream 413950 5971040 ~ 5973439 (-)
LOC117596170 NA non-coding downstream 31173 5510716 ~ 5518380 (-)
G370942 NA non-coding downstream 41184 5508102 ~ 5508369 (-)
G370941 NA non-coding downstream 43236 5506112 ~ 5506317 (-)
LOC113537576 NA non-coding downstream 120121 5415626 ~ 5429432 (-)
LOC113537484 NA non-coding downstream 184405 5345595 ~ 5365148 (-)
G371117 NA non-coding upstream 323386 5880476 ~ 5885612 (-)
LOC117596178 NA non-coding upstream 329756 5886846 ~ 5891797 (-)
G371121 NA non-coding upstream 335236 5892326 ~ 5895688 (-)
G371147 ercc5 non-coding upstream 436399 5993489 ~ 5994747 (-)
G371152 NA non-coding upstream 440913 5998003 ~ 5998159 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 2521 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 154541 5388904 ~ 5395012 (-)
G370658 NA other downstream 660172 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 2696342 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 2975082 2566757 ~ 2574471 (-)
LOC113537623 NA other upstream 384949 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 458636 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 801549 6358639 ~ 6363203 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 1313476 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 1501745 7058835 ~ 7068531 (-)

Expression


Co-expression Network