LOC113537617


Basic Information

Item Value
gene id LOC113537617
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14953561 ~ 14958201 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300026.1
GTACGTAGTTTAGTGACTCAGCATAAAAATGGGGAATTCTTCAGGGACTTGGCAGGCTTATATATGGCAGGTAAGAGGCTCAGTACCTGCACAAGATAACTGACGAGACACAAGCAGACTGCAGTATGAAGATCCGTGTCGAGGTCCAGCTGTTGGCGATGGTGGTTGCGCTGTACCTGGCTTTAGGTATGAGTGACGGCCTGGTGATAGACAAGTGTGAACTGGGGGACGAATTGAACTCGACCCTACCTGCAAACCTTTTGGACCAGATCACCAACCTGGTGGCCAAGATTGTGTGCCATGTGGAGCTGAGCTCTCACTTCAACACCAGCACCATCAATCATATCACTGGACCCAACATTCAAAGTTTCATCCGTGGAGGTCATGGAGGACGCAAGAGCAGGTCTGCAGAGTCAAGCAGTGAGGAGTCCAGTGAAGAAGACTCATCCAATGGTGCAGGACACCGAAAGATATCTGCATCGGGGTCCAGCAGTGATGAGTCCAGTGAGGAAGACATCCAGGTGCCTAAACGTGGTTTCAATTCTTCGATGGTTAATCCAGTCACTCATCCTCATGGTAACAACTCATCCAGCGGAGGAGGTCATGGAGGACGCAAGGGCAGGTCTGCAGAATCCAGCAGTGATGAGTCCAGTGAGGAAGACATCCAGGTGCCTAAACGTGGTTTCAATTCTTCGATGGTTAATCCAGTCACTCATCCTCATGGTAACAAGTCATCCAGCGGAGGAGGTCATGGAGGACGCAAGGGCAGGTCTGCAGAGTCCAGCAGTGATGAGTCCAGTGAGGAAGACATCCAGGTGCCTAAACGTGGTTTCAATACTTCGATGGTTAATCCAGTCACTCATCCTCATGGTAACAACTCATCCAGCGGAGGAGGTCATGGAGGACGCAAGGGCAGGTCTGCAGAGTCCAGCAGTAAAGAGTCTGAAGAGAGAACCACGTGGACTTTGTACGGGTTGTTCCAGCTGCCCGGTCACATTGCCTGCACCTCTGGGCTTGAACCCTCTCTCAACGTCTGCAGTATGGCCTGTGACAAACTGATCGATGACAATATCAGAGATGACATCACCTGTGTTGAGACCATCATCaaaaaaatGTTGTCAGAAGGAAGGAGTCATGGTCCAAATAAAGCAGTTTTCAGCAAATTGTTAGCTTCTTTCTTCCAGAAGGAGTGCAAGAATGTGGAGGACTTTGAGTACTTCTCCACTTGTTAAAACAGACTGCAGGCCAAGCAAACATCTCGACTCAATTCTACTCAAACAATTTCACTTGTtaactaaattttaaattaaaaaacaattacaatcaCACAATTTTGATAGATTATGGCTACACTGAGTTAATTAACCCTGGGTTAAATTAGTGGTCACGTGATCGCACTTCAACACACTGAATGAGTCGGGAGCACACAGCCGTTTTAGCCTGTAGCATGCcatgaatttctttcttttcctcctcatGTCTACTTCATTATCAATTTATTATTCCTGACTGATCAATATCTATGATTATCACAGAATTCCTGTTGTGTATTTAGTCTGAAAACAGAGCTGCCTCTAAGGTATTCCGTCATATCCGCTTGTGTGTTATAAAAAAGatcaaaattttattaaattggcCAAGAGGAAGGGAGAAAACTGTCAGAGTAAAAATGTATCTTAATTGGCACGACGTCGCAACTCGTTTGCTAATTGGCAAGATGTCGGGACAGCATTGTTTTTCAGCCAAGCTTCCGTGTAATATGTGATTTAGGCTCCCTTATTTAACAACATAATTTTCTAATAAGAACATACATTAACTAAACTTTTAACCCAAATCCATTGACATCTTCCCAATTAGCAAACGAGTTGCACGTGTCGTCATTGAGACGTCATTTGAGACGTCatttctgcgtgtgtgtgtgtgtgtgtgtgtgaaagcgtGTTACCTGGGATCTGGATTAAGTGGGTTAAATAGTCTATTTGGCCACACAAGAACAGACAccaacacagatttatttttgccAGCTGAGacaagacaaagagagaaaagttCTAATAAAACCAGATAAGTGTTAAGTTTCAAAAGAATATGCTGTtaattttatcctttttttcccccctgccTTTTCATGTTCAATTTCTTCTCTCATTTAAAA
>XM_034300027.1
GTACGTAGTTTAGTGACTCAGCATAAAAATGGGGAATTCTTCAGGGACTTGGCAGGCTTATATATGGCAGGTAAGAGGCTCAGTACCTGCACAAGATAACTGACGAGACACAAGCAGACTGCAGTATGAAGATCCGTGTCGAGGTCCAGCTGTTGGCGATGGTGGTTGCGCTGTACCTGGCTTTAGGTATGAGTGACGGCCTGGTGATAGACAAGTGTGAACTGGGGGACGAATTGAACTCGACCCTACCTGCAAACCTTTTGGACCAGATCACCAACCTGGTGGCCAAGATTGTGTGCCATGTGGAGCTGAGCTCTCACTTCAACACCAGCACCATCAATCATATCACTGGACCCAACATTCAAAGTTTCATCCGTGGAGGTCATGGAGGACGCAAGAGCAGGTCTGCAGAGTCAAGCAGTGAGGAGTCCAGTGAAGAAGACTCATCCAATGGTGCAGGACACCGAAAGATATCTGCATCGGGGTCCAGCAGTGATGAGTCCAGTGAGGAAGACATCCAGGTGCCTAAACGTGGTTTCAATTCTTCGATGGTTAATCCAGTCACTCATCCTCATGGTAACAACTCATCCAGCGGAGGAGGTCATGGAGGACGCAAGGGCAGGTCTGCAGAGTCCAGCAGTGATGAGTCCAGTGAGGAAGACATCCAGGTGCCTAAACGTGGTTTCAATACTTCGATGGTTAATCCAGTCACTCATCCTCATGGTAACAACTCATCCAGCGGAGGAGGTCATGGAGGACGCAAGGGCAGGTCTGCAGAGTCCAGCAGTAAAGAGTCTGAAGAGAGAACCACGTGGACTTTGTACGGGTTGTTCCAGCTGCCCGGTCACATTGCCTGCACCTCTGGGCTTGAACCCTCTCTCAACGTCTGCAGTATGGCCTGTGACAAACTGATCGATGACAATATCAGAGATGACATCACCTGTGTTGAGACCATCATCaaaaaaatGTTGTCAGAAGGAAGGAGTCATGGTCCAAATAAAGCAGTTTTCAGCAAATTGTTAGCTTCTTTCTTCCAGAAGGAGTGCAAGAATGTGGAGGACTTTGAGTACTTCTCCACTTGTTAAAACAGACTGCAGGCCAAGCAAACATCTCGACTCAATTCTACTCAAACAATTTCACTTGTtaactaaattttaaattaaaaaacaattacaatcaCACAATTTTGATAGATTATGGCTACACTGAGTTAATTAACCCTGGGTTAAATTAGTGGTCACGTGATCGCACTTCAACACACTGAATGAGTCGGGAGCACACAGCCGTTTTAGCCTGTAGCATGCcatgaatttctttcttttcctcctcatGTCTACTTCATTATCAATTTATTATTCCTGACTGATCAATATCTATGATTATCACAGAATTCCTGTTGTGTATTTAGTCTGAAAACAGAGCTGCCTCTAAGGTATTCCGTCATATCCGCTTGTGTGTTATAAAAAAGatcaaaattttattaaattggcCAAGAGGAAGGGAGAAAACTGTCAGAGTAAAAATGTATCTTAATTGGCACGACGTCGCAACTCGTTTGCTAATTGGCAAGATGTCGGGACAGCATTGTTTTTCAGCCAAGCTTCCGTGTAATATGTGATTTAGGCTCCCTTATTTAACAACATAATTTTCTAATAAGAACATACATTAACTAAACTTTTAACCCAAATCCATTGACATCTTCCCAATTAGCAAACGAGTTGCACGTGTCGTCATTGAGACGTCATTTGAGACGTCatttctgcgtgtgtgtgtgtgtgtgtgtgtgaaagcgtGTTACCTGGGATCTGGATTAAGTGGGTTAAATAGTCTATTTGGCCACACAAGAACAGACAccaacacagatttatttttgccAGCTGAGacaagacaaagagagaaaagttCTAATAAAACCAGATAAGTGTTAAGTTTCAAAAGAATATGCTGTtaattttatcctttttttcccccctgccTTTTCATGTTCAATTTCTTCTCTCATTTAAAA
>XM_034300028.1
CAAGGTACGTAGTTTAGTGACTCAGCATAAAAATGGGGAATTCTTCAGGGACTTGGCAGGCTTATATATGGCAGGTAAGAGGCTCAGTACCTGCACAAGATAACTGACGAGACACAAGCAGACTGCAGTATGAAGATCCGTGTCGAGGTCCAGCTGTTGGCGATGGTGGTTGCGCTGTACCTGGCTTTAGGTATGAGTGACGGCCTGGTGATAGACAAGTGTGAACTGGGGGACGAATTGAACTCGACCCTACCTGCAAACCTTTTGGACCAGATCACCAACCTGGTGGCCAAGATTGTGTGCCATGTGGAGCTGAGCTCTCACTTCAACACCAGCACCATCAATCATATCACTGGACCCAACATTCAAAGTTTCATCCGTGGAGGTCATGGAGGACGCAAGAGCAGGTCTGCAGAGTCAAGCAGTGAGGAGTCCAGTGAAGAAGACTCATCCAATGGTGCAGGACACCGAAAGATATCTGCATCGGGGTCCAGCAGTGATGAGTCCAGTGAGGAAGACATCCAGGTGCCTAAACGTGGTTTCAATTCTTCGATGGTTAATCCAGTCACTCATCCTCATGGTAACAAGTCATCCAGCGGAGGAGGTCATGGAGGACGCAAGGGCAGGTCTGCAGAGTCCAGCAGTGATGAGTCCAGTGAGGAAGACATCCAGGTGCCTAAACGTGGTTTCAATACTTCGATGGTTAATCCAGTCACTCATCCTCATGGTAACAACTCATCCAGCGGAGGAGGTCATGGAGGACGCAAGGGCAGGTCTGCAGAGTCCAGCAGTAAAGAGTCTGAAGAGAGAACCACGTGGACTTTGTACGGGTTGTTCCAGCTGCCCGGTCACATTGCCTGCACCTCTGGGCTTGAACCCTCTCTCAACGTCTGCAGTATGGCCTGTGACAAACTGATCGATGACAATATCAGAGATGACATCACCTGTGTTGAGACCATCATCaaaaaaatGTTGTCAGAAGGAAGGAGTCATGGTCCAAATAAAGCAGTTTTCAGCAAATTGTTAGCTTCTTTCTTCCAGAAGGAGTGCAAGAATGTGGAGGACTTTGAGTACTTCTCCACTTGTTAAAACAGACTGCAGGCCAAGCAAACATCTCGACTCAATTCTACTCAAACAATTTCACTTGTtaactaaattttaaattaaaaaacaattacaatcaCACAATTTTGATAGATTATGGCTACACTGAGTTAATTAACCCTGGGTTAAATTAGTGGTCACGTGATCGCACTTCAACACACTGAATGAGTCGGGAGCACACAGCCGTTTTAGCCTGTAGCATGCcatgaatttctttcttttcctcctcatGTCTACTTCATTATCAATTTATTATTCCTGACTGATCAATATCTATGATTATCACAGAATTCCTGTTGTGTATTTAGTCTGAAAACAGAGCTGCCTCTAAGGTATTCCGTCATATCCGCTTGTGTGTTATAAAAAAGatcaaaattttattaaattggcCAAGAGGAAGGGAGAAAACTGTCAGAGTAAAAATGTATCTTAATTGGCACGACGTCGCAACTCGTTTGCTAATTGGCAAGATGTCGGGACAGCATTGTTTTTCAGCCAAGCTTCCGTGTAATATGTGATTTAGGCTCCCTTATTTAACAACATAATTTTCTAATAAGAACATACATTAACTAAACTTTTAACCCAAATCCATTGACATCTTCCCAATTAGCAAACGAGTTGCACGTGTCGTCATTGAGACGTCATTTGAGACGTCatttctgcgtgtgtgtgtgtgtgtgtgtgtgaaagcgtGTTACCTGGGATCTGGATTAAGTGGGTTAAATAGTCTATTTGGCCACACAAGAACAGACAccaacacagatttatttttgccAGCTGAGacaagacaaagagagaaaagttCTAATAAAACCAGATAAGTGTTAAGTTTCAAAAGAATATGCTGTtaattttatcctttttttcccccctgccTTTTCATGTTCAATTTCTTCTCTCATTTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300026.1 True 2155 mRNA 0.44 6 14953561 14958197
XM_034300027.1 False 2008 mRNA 0.43 6 14953561 14958197
XM_034300028.1 False 2012 mRNA 0.43 7 14953561 14958201

Neighbor

gene id symbol gene type direction distance location
cct4 cct4,LOC107700877,LOC107594293 coding downstream 55419 14890222 ~ 14898142 (-)
fam161a fam161a coding downstream 64652 14880246 ~ 14888909 (-)
xpo1a xpo1,LOC108258411,LOC107746076,LOC107729732,LOC107703835,LOC100380723,LOC106585804 coding downstream 74977 14854881 ~ 14878584 (-)
usp34 usp34,LOC107746122,LOC107729952 coding downstream 101608 14787119 ~ 14851953 (-)
commd1 commd1 coding downstream 193523 14751030 ~ 14760038 (-)
spast spast coding upstream 102720 15060921 ~ 15072345 (-)
rln3b rln3 coding upstream 116470 15074671 ~ 15077616 (-)
dcaf15 dcaf15,LOC106592097,LOC106594349 coding upstream 145976 15104177 ~ 15113293 (-)
dla LOC108258338,LOC103023774,LOC108438608,LOC107746130,LOC107703728,LOC107598533,LOC107700799,LOC107594356 coding upstream 178032 15136233 ~ 15142801 (-)
ccsapa LOC108258518 coding upstream 214537 15172738 ~ 15180828 (-)
G376171 NA non-coding downstream 213754 14739369 ~ 14739807 (-)
G376127 taf5l non-coding downstream 292250 14657946 ~ 14661311 (-)
G376093 NA non-coding downstream 420877 14532367 ~ 14532684 (-)
G376055 NA non-coding downstream 487053 14462142 ~ 14466508 (-)
G376050 snrpb2 non-coding downstream 565686 14386338 ~ 14387875 (-)
G376364 NA non-coding upstream 76964 15035165 ~ 15035466 (-)
G376574 NA non-coding upstream 86511 15044712 ~ 15045359 (-)
G376602 NA non-coding upstream 140815 15099016 ~ 15101012 (-)
G376608 LOC108259073 non-coding upstream 173816 15132017 ~ 15132290 (-)
G376613 NA non-coding upstream 189584 15147785 ~ 15147985 (-)
b3gnt2a LOC108259010 other downstream 203827 14740132 ~ 14749734 (-)
ifngr1 NA other downstream 240915 14697239 ~ 14712646 (-)
G376143 NA other downstream 269233 14682387 ~ 14684328 (-)
meis1a meis1 other downstream 429045 14460283 ~ 14524516 (-)
dand5 LOC108258523 other downstream 677024 14274327 ~ 14276537 (-)
triobpa LOC108259073 other upstream 159311 15117512 ~ 15129256 (-)
dpy30 dpy30,LOC107684266 other upstream 454223 15412424 ~ 15458205 (-)
G376956 NA other upstream 959427 15917628 ~ 15920553 (-)
khsrp khsrp other upstream 971552 15929753 ~ 15942730 (-)
vps54 vps54,LOC107709616 other upstream 1005675 15963876 ~ 15984959 (-)

Expression


Co-expression Network